Cla001645 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla001645
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr11 : 5743030 .. 5743947 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCGGAGGACGAGCTCGACATGCACGATGCCCATGACGACGACGGCTCTGTTGACAATGAGGAGGACTTCTACAGTGGCGGCGACGACGATGGTGCCGCCATCGACAGCGACGATGCTGATGTCGGTGATTACGAGTTTGTTGATAATGATTCCGACGATTCCGACGACATGGTCTCCTATCGCCACCAGGTCATATTGTACCACTTTCCATCTTTTTGTGTTTCTCCATGGGCATTCATAATTTGTAGTTTTGTGAATGCTAGTGTTTCTCGATTGCTCTATTCTACTCTTTACCAATCTGAATTTCCAGTACCTTTTTTATTTCTTTGTTTTTCTTCCCCTATTTGCGTATTAGATTGGGATTCTTTTTGCTTCTTTCTACAAATGCATAGCTAGAGAACTTTTAATATTCTTTTCATACGAGTCTGTTTCGTTTTGATGGTTTAATTGGGTACTCAAGTGCAATTAGACTCTTGAAGTTTGTTAATTTTAGTTATATATTTATATCTTGAAATGTGATACTTTTCGGGAAGAATTAGAGTGTTCCATGACTCCTTGATGTTGAGTTAGAAGCATAATGGCTGGTTCGTTGTAGAGCGCAGTAGCTGAGCCTGCTCGCAGTGGACTTATCAACTTTTAAAAAATTGTATTAATAACAAGAGAGAACCAAGAGCATATATTTTTTTCTGCCAAGTAATGATTCCTTTGTGGTTTAAGCTTTTGGAAGCTTTCCTTCTGTACAGGACTTGTTCTAGATTAGATTGGCTGGTAATCTGGTGGTTTAGGCGATTGTAGGGCCAAGATTCAGGAACTGTTGGAGGGTTTTGTGGACTAATGCTTGTGGTGCTCTCCTCTAGAACATTGGCTAGTAGGAAAGAGAGAGAAGAAAAAGAAATGAGGGTGGGTGAGTAG

mRNA sequence

ATGGAATCGGAGGACGAGCTCGACATGCACGATGCCCATGACGACGACGGCTCTGTTGACAATGAGGAGGACTTCTACAGTGGCGGCGACGACGATGGTGCCGCCATCGACAGCGACGATGCTGATGTCGGTGATTACGAGTTTGTTGATAATGATTCCGACGATTCCGACGACATGGTCTCCTATCGCCACCAGGGCCAAGATTCAGGAACTGTTGGAGGGTTTTGTGGACTAATGCTTGTGGTGCTCTCCTCTAGAACATTGGCTAGTAGGAAAGAGAGAGAAGAAAAAGAAATGAGGGTGGGTGAGTAG

Coding sequence (CDS)

ATGGAATCGGAGGACGAGCTCGACATGCACGATGCCCATGACGACGACGGCTCTGTTGACAATGAGGAGGACTTCTACAGTGGCGGCGACGACGATGGTGCCGCCATCGACAGCGACGATGCTGATGTCGGTGATTACGAGTTTGTTGATAATGATTCCGACGATTCCGACGACATGGTCTCCTATCGCCACCAGGGCCAAGATTCAGGAACTGTTGGAGGGTTTTGTGGACTAATGCTTGTGGTGCTCTCCTCTAGAACATTGGCTAGTAGGAAAGAGAGAGAAGAAAAAGAAATGAGGGTGGGTGAGTAG

Protein sequence

MESEDELDMHDAHDDDGSVDNEEDFYSGGDDDGAAIDSDDADVGDYEFVDNDSDDSDDMVSYRHQGQDSGTVGGFCGLMLVVLSSRTLASRKEREEKEMRVGE

Homology

[Close]

BLAST of Cla001645 vs. TrEMBL
Match: A0A0A0LMY6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G091800 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.4e-41
Identity = 87/98 (88.78%), Postives = 89/98 (90.82%), Query Frame = 1


Query: 1  MESEDELDMHDAHDDDG-SVDNEEDFYSGGDDDGAAIDSDDADVGDYEFVDNDSDDSDDM 60
          MESEDELDMHDAHDDD  SVDNEEDFYSGGDDD A IDSDDADVGDYEFVDNDSDDSDDM
Sbjct: 1  MESEDELDMHDAHDDDDDSVDNEEDFYSGGDDDAAGIDSDDADVGDYEFVDNDSDDSDDM 60

Query: 61 VSYRHQGQDSGTVGGFCGLMLVVLSSRTLASRKEREEK 98
          VSYRHQG+DSGTVG FCG MLVVLSS+T AS KERE K
Sbjct: 61 VSYRHQGKDSGTVGEFCGPMLVVLSSKTFASSKERENK 98

[Close]

BLAST of Cla001645 vs. TrEMBL
Match: W9RV82_9ROSA (Putative E3 ubiquitin-protein ligase ARI8 OS=Morus notabilis GN=L484_003557 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.5e-19
Identity = 48/67 (71.64%), Postives = 58/67 (86.57%), Query Frame = 1


Query: 1  MESEDELDMHDAHDDDGSVDNEEDFYSGGDDDGAA--IDSDDADVGDYEFVDNDSDDSDD 60
          M+SEDE DMHDA+DD+   DN++ FYSGGDDD AA  +DSDDAD+ DYEF+DNDSDDSDD
Sbjct: 1  MDSEDEFDMHDANDDED--DNDDHFYSGGDDDAAAAGLDSDDADIADYEFIDNDSDDSDD 60

Query: 61 MVSYRHQ 66
          +VS+RHQ
Sbjct: 61 VVSHRHQ 65

[Close]

BLAST of Cla001645 vs. TrEMBL
Match: M5WKX8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003187mg PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 5.2e-17
Identity = 46/66 (69.70%), Postives = 56/66 (84.85%), Query Frame = 1


Query: 1  MESEDELDMHDAHDDDGSVDNEEDFYSGGDDDGAA-IDSDDADVGDYEFVDNDSDDSDDM 60
          MES+DE DM DA+DDD   DN+EDFYSGGDDD AA +DSD+A V DYEF+DNDSDDS+D+
Sbjct: 1  MESDDEFDMLDANDDD---DNDEDFYSGGDDDAAAAMDSDEAGVADYEFIDNDSDDSNDV 60

Query: 61 VSYRHQ 66
           S+R+Q
Sbjct: 61 ASHRYQ 63

[Close]

BLAST of Cla001645 vs. TrEMBL
Match: A0A061EYH9_THECC (IBR domain-containing protein isoform 2 OS=Theobroma cacao GN=TCM_025075 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 8.9e-17
Identity = 45/68 (66.18%), Postives = 55/68 (80.88%), Query Frame = 1


Query: 1  MESEDELDMHDAHDDDGSVDNEEDFYSGGDDDG---AAIDSDDADVGDYEFVDNDSDDSD 60
          MESED++DMHDA+++ G    E+DFYSGGDDD    AA D  DADV DYEF+DNDSDDSD
Sbjct: 1  MESEDDIDMHDANNESG----EDDFYSGGDDDAGAMAAYDDSDADVADYEFIDNDSDDSD 60

Query: 61 DMVSYRHQ 66
          D+VS+R+Q
Sbjct: 61 DLVSHRYQ 64

[Close]

BLAST of Cla001645 vs. TrEMBL
Match: A0A061EZ86_THECC (IBR domain-containing protein isoform 1 OS=Theobroma cacao GN=TCM_025075 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 8.9e-17
Identity = 45/68 (66.18%), Postives = 55/68 (80.88%), Query Frame = 1


Query: 1  MESEDELDMHDAHDDDGSVDNEEDFYSGGDDDG---AAIDSDDADVGDYEFVDNDSDDSD 60
          MESED++DMHDA+++ G    E+DFYSGGDDD    AA D  DADV DYEF+DNDSDDSD
Sbjct: 1  MESEDDIDMHDANNESG----EDDFYSGGDDDAGAMAAYDDSDADVADYEFIDNDSDDSD 60

Query: 61 DMVSYRHQ 66
          D+VS+R+Q
Sbjct: 61 DLVSHRYQ 64

[Close]

BLAST of Cla001645 vs. NCBI nr
Match: gi|700206217|gb|KGN61336.1| (hypothetical protein Csa_2G091800 [Cucumis sativus])

HSP 1 Score: 176.8 bits (447), Expect = 2.0e-41
Identity = 87/98 (88.78%), Postives = 89/98 (90.82%), Query Frame = 1


Query: 1  MESEDELDMHDAHDDDG-SVDNEEDFYSGGDDDGAAIDSDDADVGDYEFVDNDSDDSDDM 60
          MESEDELDMHDAHDDD  SVDNEEDFYSGGDDD A IDSDDADVGDYEFVDNDSDDSDDM
Sbjct: 1  MESEDELDMHDAHDDDDDSVDNEEDFYSGGDDDAAGIDSDDADVGDYEFVDNDSDDSDDM 60

Query: 61 VSYRHQGQDSGTVGGFCGLMLVVLSSRTLASRKEREEK 98
          VSYRHQG+DSGTVG FCG MLVVLSS+T AS KERE K
Sbjct: 61 VSYRHQGKDSGTVGEFCGPMLVVLSSKTFASSKERENK 98

[Close]

BLAST of Cla001645 vs. NCBI nr
Match: gi|449442245|ref|XP_004138892.1| (PREDICTED: probable E3 ubiquitin-protein ligase ARI8 isoform X1 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 2.7e-27
Identity = 62/66 (93.94%), Postives = 62/66 (93.94%), Query Frame = 1


Query: 1  MESEDELDMHDAHDDDG-SVDNEEDFYSGGDDDGAAIDSDDADVGDYEFVDNDSDDSDDM 60
          MESEDELDMHDAHDDD  SVDNEEDFYSGGDDD A IDSDDADVGDYEFVDNDSDDSDDM
Sbjct: 1  MESEDELDMHDAHDDDDDSVDNEEDFYSGGDDDAAGIDSDDADVGDYEFVDNDSDDSDDM 60

Query: 61 VSYRHQ 66
          VSYRHQ
Sbjct: 61 VSYRHQ 66

[Close]

BLAST of Cla001645 vs. NCBI nr
Match: gi|778668058|ref|XP_011649031.1| (PREDICTED: probable E3 ubiquitin-protein ligase ARI8 isoform X2 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 2.7e-27
Identity = 62/66 (93.94%), Postives = 62/66 (93.94%), Query Frame = 1


Query: 1  MESEDELDMHDAHDDDG-SVDNEEDFYSGGDDDGAAIDSDDADVGDYEFVDNDSDDSDDM 60
          MESEDELDMHDAHDDD  SVDNEEDFYSGGDDD A IDSDDADVGDYEFVDNDSDDSDDM
Sbjct: 1  MESEDELDMHDAHDDDDDSVDNEEDFYSGGDDDAAGIDSDDADVGDYEFVDNDSDDSDDM 60

Query: 61 VSYRHQ 66
          VSYRHQ
Sbjct: 61 VSYRHQ 66

[Close]

BLAST of Cla001645 vs. NCBI nr
Match: gi|659082302|ref|XP_008441770.1| (PREDICTED: probable E3 ubiquitin-protein ligase ARI8 isoform X2 [Cucumis melo])

HSP 1 Score: 129.8 bits (325), Expect = 2.7e-27
Identity = 62/66 (93.94%), Postives = 62/66 (93.94%), Query Frame = 1


Query: 1  MESEDELDMHDAHDDDG-SVDNEEDFYSGGDDDGAAIDSDDADVGDYEFVDNDSDDSDDM 60
          MESEDELDMHDAHDDD  SVDNEEDFYSGGDDD A IDSDDADVGDYEFVDNDSDDSDDM
Sbjct: 1  MESEDELDMHDAHDDDDDSVDNEEDFYSGGDDDAAGIDSDDADVGDYEFVDNDSDDSDDM 60

Query: 61 VSYRHQ 66
          VSYRHQ
Sbjct: 61 VSYRHQ 66

[Close]

BLAST of Cla001645 vs. NCBI nr
Match: gi|659082300|ref|XP_008441769.1| (PREDICTED: probable E3 ubiquitin-protein ligase ARI8 isoform X1 [Cucumis melo])

HSP 1 Score: 129.8 bits (325), Expect = 2.7e-27
Identity = 62/66 (93.94%), Postives = 62/66 (93.94%), Query Frame = 1


Query: 1  MESEDELDMHDAHDDDG-SVDNEEDFYSGGDDDGAAIDSDDADVGDYEFVDNDSDDSDDM 60
          MESEDELDMHDAHDDD  SVDNEEDFYSGGDDD A IDSDDADVGDYEFVDNDSDDSDDM
Sbjct: 1  MESEDELDMHDAHDDDDDSVDNEEDFYSGGDDDAAGIDSDDADVGDYEFVDNDSDDSDDM 60

Query: 61 VSYRHQ 66
          VSYRHQ
Sbjct: 61 VSYRHQ 66

The following BLAST results are available for this feature:

BLAST of Cla001645 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMY6_CUCSA	1.4e-41	88.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G091800 PE=4 SV=1	[more]
W9RV82_9ROSA	1.5e-19	71.64	Putative E3 ubiquitin-protein ligase ARI8 OS=Morus notabilis GN=L484_003557 PE=4...	[more]
M5WKX8_PRUPE	5.2e-17	69.70	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003187mg PE=4 SV=1	[more]
A0A061EYH9_THECC	8.9e-17	66.18	IBR domain-containing protein isoform 2 OS=Theobroma cacao GN=TCM_025075 PE=4 SV...	[more]
A0A061EZ86_THECC	8.9e-17	66.18	IBR domain-containing protein isoform 1 OS=Theobroma cacao GN=TCM_025075 PE=4 SV...	[more]

BLAST of Cla001645 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206217\|gb\|KGN61336.1\|	2.0e-41	88.78	hypothetical protein Csa_2G091800 [Cucumis sativus]	[more]
gi\|449442245\|ref\|XP_004138892.1\|	2.7e-27	93.94	PREDICTED: probable E3 ubiquitin-protein ligase ARI8 isoform X1 [Cucumis sativus...	[more]
gi\|778668058\|ref\|XP_011649031.1\|	2.7e-27	93.94	PREDICTED: probable E3 ubiquitin-protein ligase ARI8 isoform X2 [Cucumis sativus...	[more]
gi\|659082302\|ref\|XP_008441770.1\|	2.7e-27	93.94	PREDICTED: probable E3 ubiquitin-protein ligase ARI8 isoform X2 [Cucumis melo]	[more]
gi\|659082300\|ref\|XP_008441769.1\|	2.7e-27	93.94	PREDICTED: probable E3 ubiquitin-protein ligase ARI8 isoform X1 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0004842	ubiquitin-protein transferase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU15214	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla001645	Cla001645.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU15214	WMU15214	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla001645	Csa2G091800	Cucumber (Chinese Long) v2	cuwmB158

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla001645	Wild cucumber (PI 183967)	cpiwmB160
Cla001645	Wild cucumber (PI 183967)	cpiwmB168
Cla001645	Bottle gourd (USVL1VR-Ls)	lsiwmB113
Cla001645	Bottle gourd (USVL1VR-Ls)	lsiwmB119
Cla001645	Cucumber (Gy14) v2	cgybwmB150
Cla001645	Cucumber (Chinese Long) v3	cucwmB169
Cla001645	Cucumber (Chinese Long) v3	cucwmB177