Csa2G071930 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G071930
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionDefensin-like protein 51
LocationChr2 : 5572446 .. 5572924 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GACGCTTTAAATACACTTTCACATTTTGTAGAACACATCCTTCATAATCAATAATCTCATCGAAGCATAAGGATCCAAATCGTCTCAGAGACATGGCAACCCAAAAGCTTGCTACAATATCAATTGTTGTTTTGATGATATTCGCATGTATTGCATCAACAAGTATGCTCTTTAACTCATAAGTACTCTAATTCCATACAACTATTTTTGCTAGAACAATATTTTATACCATGTTATCTTTGTTAATATGGCAGCAAAAGGAGACGTTTTGAATGTGCATTGTGTTCGACCATGCTCTGATACTTATGACGACGAGTCGTGTTATAATGATTGCATTCAAGAGAATCTTGGTGCTGGATTTTGTTACCCGAAACTACCTAGCACCGATAAAGATTGTTGTTGCAATGTTTGACAATAATTGATTGCGTAACATTTTATTGAAACTTATAAATAAAATTTAATATTTTACAATATCTCTT

mRNA sequence

ATGGCAACCCAAAAGCTTGCTACAATATCAATTGTTGTTTTGATGATATTCGCATGTATTGCATCAACAACAAAAGGAGACGTTTTGAATGTGCATTGTGTTCGACCATGCTCTGATACTTATGACGACGAGTCGTGTTATAATGATTGCATTCAAGAGAATCTTGGTGCTGGATTTTGTTACCCGAAACTACCTAGCACCGATAAAGATTGTTGTTGCAATGTTTGA

Coding sequence (CDS)

ATGGCAACCCAAAAGCTTGCTACAATATCAATTGTTGTTTTGATGATATTCGCATGTATTGCATCAACAACAAAAGGAGACGTTTTGAATGTGCATTGTGTTCGACCATGCTCTGATACTTATGACGACGAGTCGTGTTATAATGATTGCATTCAAGAGAATCTTGGTGCTGGATTTTGTTACCCGAAACTACCTAGCACCGATAAAGATTGTTGTTGCAATGTTTGA

Protein sequence

MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFCYPKLPSTDKDCCCNV*
Homology
[Close]
BLAST of Csa2G071930 vs. TrEMBL
Match: A0A0A0LHG9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G071930 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 4.0e-38
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60
          MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC
Sbjct: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60

Query: 61 YPKLPSTDKDCCCNV 76
          YPKLPSTDKDCCCNV
Sbjct: 61 YPKLPSTDKDCCCNV 75

[Close]
BLAST of Csa2G071930 vs. TrEMBL
Match: A0A0A0LJG5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G072430 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 5.3e-35
Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = 1 

Query: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60
          MATQKLATISIVVL+IF CI STTKGDVLNVHCVRPC DTYDDESCYNDCI+ENLGAGFC
Sbjct: 1  MATQKLATISIVVLVIFPCIVSTTKGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFC 60

Query: 61 YPKLPSTDKDCCCN 75
          YPKLPSTDKDCCCN
Sbjct: 61 YPKLPSTDKDCCCN 74

[Close]
BLAST of Csa2G071930 vs. TrEMBL
Match: A0A0A0LKF5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G070930 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 2.9e-25
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 1 

Query: 23 TTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFCYPKLPSTDKDCCCNV 76
          T KGD+LNVHCVRPCSDTYDDESCYNDCI+ENLGAGFCYPKLPSTDKDCCCNV
Sbjct: 2  TAKGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCNV 54

[Close]
BLAST of Csa2G071930 vs. TrEMBL
Match: A0A0A0L1R8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G339000 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 7.0e-11
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 1 

Query: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60
          M TQKL  +S++V + F+C AS+ +GD L  +CV PCS+   D  C   CI+++ GAGFC
Sbjct: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDL-WNCVIPCSNNNGDILCNTACIEQDEGAGFC 60

Query: 61 YPKLP--STDKDCCCN 75
           PKLP  S  K CCCN
Sbjct: 61 VPKLPGISDMKVCCCN 75

[Close]
BLAST of Csa2G071930 vs. NCBI nr
Match: gi|700206109|gb|KGN61228.1| (hypothetical protein Csa_2G071930 [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 5.7e-38
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60
          MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC
Sbjct: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60

Query: 61 YPKLPSTDKDCCCNV 76
          YPKLPSTDKDCCCNV
Sbjct: 61 YPKLPSTDKDCCCNV 75

[Close]
BLAST of Csa2G071930 vs. NCBI nr
Match: gi|700206110|gb|KGN61229.1| (hypothetical protein Csa_2G072430 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 7.7e-35
Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = 1 

Query: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60
          MATQKLATISIVVL+IF CI STTKGDVLNVHCVRPC DTYDDESCYNDCI+ENLGAGFC
Sbjct: 1  MATQKLATISIVVLVIFPCIVSTTKGDVLNVHCVRPCYDTYDDESCYNDCIRENLGAGFC 60

Query: 61 YPKLPSTDKDCCCN 75
          YPKLPSTDKDCCCN
Sbjct: 61 YPKLPSTDKDCCCN 74

[Close]
BLAST of Csa2G071930 vs. NCBI nr
Match: gi|700206108|gb|KGN61227.1| (hypothetical protein Csa_2G070930 [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 4.2e-25
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 1 

Query: 23 TTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFCYPKLPSTDKDCCCNV 76
          T KGD+LNVHCVRPCSDTYDDESCYNDCI+ENLGAGFCYPKLPSTDKDCCCNV
Sbjct: 2  TAKGDILNVHCVRPCSDTYDDESCYNDCIRENLGAGFCYPKLPSTDKDCCCNV 54

[Close]
BLAST of Csa2G071930 vs. NCBI nr
Match: gi|700199339|gb|KGN54497.1| (hypothetical protein Csa_4G339000 [Cucumis sativus])

HSP 1 Score: 74.3 bits (181), Expect = 1.0e-10
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 1 

Query: 1  MATQKLATISIVVLMIFACIASTTKGDVLNVHCVRPCSDTYDDESCYNDCIQENLGAGFC 60
          M TQKL  +S++V + F+C AS+ +GD L  +CV PCS+   D  C   CI+++ GAGFC
Sbjct: 1  MVTQKLFIVSMLVAVTFSCFASSMEGDDL-WNCVIPCSNNNGDILCNTACIEQDEGAGFC 60

Query: 61 YPKLP--STDKDCCCN 75
           PKLP  S  K CCCN
Sbjct: 61 VPKLPGISDMKVCCCN 75

The following BLAST results are available for this feature:
BLAST of Csa2G071930 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LHG9_CUCSA4.0e-38100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G071930 PE=4 SV=1[more]
A0A0A0LJG5_CUCSA5.3e-3593.24Uncharacterized protein OS=Cucumis sativus GN=Csa_2G072430 PE=4 SV=1[more]
A0A0A0LKF5_CUCSA2.9e-2594.34Uncharacterized protein OS=Cucumis sativus GN=Csa_2G070930 PE=4 SV=1[more]
A0A0A0L1R8_CUCSA7.0e-1150.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G339000 PE=4 SV=1[more]
BLAST of Csa2G071930 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206109|gb|KGN61228.1|5.7e-38100.00hypothetical protein Csa_2G071930 [Cucumis sativus][more]
gi|700206110|gb|KGN61229.1|7.7e-3593.24hypothetical protein Csa_2G072430 [Cucumis sativus][more]
gi|700206108|gb|KGN61227.1|4.2e-2594.34hypothetical protein Csa_2G070930 [Cucumis sativus][more]
gi|700199339|gb|KGN54497.1|1.0e-1050.00hypothetical protein Csa_4G339000 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU102126cucumber EST collection version 3.0transcribed_cluster
CU154455cucumber EST collection version 3.0transcribed_cluster
CU163585cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G071930.1Csa2G071930.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU102126CU102126transcribed_cluster
CU154455CU154455transcribed_cluster
CU163585CU163585transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRODOMPD864278coord: 20..73
score: 8.
NoneNo IPR availablePROFILEPS51257PROKAR_LIPOPROTEINcoord: 1..19
score:

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G071930Watermelon (97103) v2cuwmbB109
Csa2G071930Cucumber (Gy14) v1cgycuB274
Csa2G071930Cucurbita maxima (Rimu)cmacuB165
Csa2G071930Cucurbita maxima (Rimu)cmacuB786
Csa2G071930Cucurbita moschata (Rifu)cmocuB150
Csa2G071930Cucurbita moschata (Rifu)cmocuB779
Csa2G071930Melon (DHL92) v3.5.1cumeB133
Csa2G071930Watermelon (Charleston Gray)cuwcgB103
Csa2G071930Watermelon (97103) v1cuwmB163
Csa2G071930Cucurbita pepo (Zucchini)cpecuB098
Csa2G071930Cucurbita pepo (Zucchini)cpecuB811
Csa2G071930Bottle gourd (USVL1VR-Ls)culsiB098
Csa2G071930Cucumber (Gy14) v2cgybcuB056
Csa2G071930Melon (DHL92) v3.6.1cumedB132
Csa2G071930Silver-seed gourdcarcuB0005
Csa2G071930Silver-seed gourdcarcuB0184