Csa2G060440 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G060440
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 4724238 .. 4724429 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTATGTTTGCTTGTGAGAAAGAAGGTTGTTTACCATCAACTTCTCCACTATCGTCGAAACTTGTGAATACTCGGTTTATTCCTATAGTTGATAGTGTCGTAACCTCCTTCTCCATCTTCATGATTCGGACATCCACCACGGACTCTAATGAGGTTGCACAATACCTTTCTTCTATCCATCAGTATTGA

mRNA sequence

ATGGGTATGTTTGCTTGTGAGAAAGAAGGTTGTTTACCATCAACTTCTCCACTATCGTCGAAACTTGTGAATACTCGGTTTATTCCTATAGTTGATAGTGTCGTAACCTCCTTCTCCATCTTCATGATTCGGACATCCACCACGGACTCTAATGAGGTTGCACAATACCTTTCTTCTATCCATCAGTATTGA

Coding sequence (CDS)

ATGGGTATGTTTGCTTGTGAGAAAGAAGGTTGTTTACCATCAACTTCTCCACTATCGTCGAAACTTGTGAATACTCGGTTTATTCCTATAGTTGATAGTGTCGTAACCTCCTTCTCCATCTTCATGATTCGGACATCCACCACGGACTCTAATGAGGTTGCACAATACCTTTCTTCTATCCATCAGTATTGA

Protein sequence

MGMFACEKEGCLPSTSPLSSKLVNTRFIPIVDSVVTSFSIFMIRTSTTDSNEVAQYLSSIHQY*
Homology
[Close]
BLAST of Csa2G060440 vs. TrEMBL
Match: A0A0A0LHB7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G060440 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 5.9e-27
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 1  MGMFACEKEGCLPSTSPLSSKLVNTRFIPIVDSVVTSFSIFMIRTSTTDSNEVAQYLSSI 60
          MGMFACEKEGCLPSTSPLSSKLVNTRFIPIVDSVVTSFSIFMIRTSTTDSNEVAQYLSSI
Sbjct: 1  MGMFACEKEGCLPSTSPLSSKLVNTRFIPIVDSVVTSFSIFMIRTSTTDSNEVAQYLSSI 60

Query: 61 HQY 64
          HQY
Sbjct: 61 HQY 63

[Close]
BLAST of Csa2G060440 vs. NCBI nr
Match: gi|700206044|gb|KGN61163.1| (hypothetical protein Csa_2G060440 [Cucumis sativus])

HSP 1 Score: 127.5 bits (319), Expect = 8.5e-27
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 1  MGMFACEKEGCLPSTSPLSSKLVNTRFIPIVDSVVTSFSIFMIRTSTTDSNEVAQYLSSI 60
          MGMFACEKEGCLPSTSPLSSKLVNTRFIPIVDSVVTSFSIFMIRTSTTDSNEVAQYLSSI
Sbjct: 1  MGMFACEKEGCLPSTSPLSSKLVNTRFIPIVDSVVTSFSIFMIRTSTTDSNEVAQYLSSI 60

Query: 61 HQY 64
          HQY
Sbjct: 61 HQY 63

The following BLAST results are available for this feature:
BLAST of Csa2G060440 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LHB7_CUCSA5.9e-27100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G060440 PE=4 SV=1[more]
BLAST of Csa2G060440 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206044|gb|KGN61163.1|8.5e-27100.00hypothetical protein Csa_2G060440 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU113528cucumber EST collection version 3.0transcribed_cluster
CU114948cucumber EST collection version 3.0transcribed_cluster
CU133675cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G060440.1Csa2G060440.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU114948CU114948transcribed_cluster
CU133675CU133675transcribed_cluster
CU113528CU113528transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G060440Silver-seed gourdcarcuB0625
Csa2G060440Silver-seed gourdcarcuB0643
Csa2G060440Silver-seed gourdcarcuB0806
Csa2G060440Silver-seed gourdcarcuB1009
Csa2G060440Watermelon (97103) v2cuwmbB109
Csa2G060440Watermelon (97103) v2cuwmbB144
Csa2G060440Wax gourdcuwgoB136
Csa2G060440Wax gourdcuwgoB215
Csa2G060440Cucumber (Chinese Long) v2cucuB004
Csa2G060440Cucumber (Gy14) v1cgycuB078
Csa2G060440Cucumber (Gy14) v1cgycuB096
Csa2G060440Cucurbita maxima (Rimu)cmacuB077
Csa2G060440Cucurbita maxima (Rimu)cmacuB122
Csa2G060440Cucurbita maxima (Rimu)cmacuB165
Csa2G060440Cucurbita maxima (Rimu)cmacuB786
Csa2G060440Cucurbita moschata (Rifu)cmocuB067
Csa2G060440Cucurbita moschata (Rifu)cmocuB109
Csa2G060440Cucurbita moschata (Rifu)cmocuB150
Csa2G060440Cucurbita moschata (Rifu)cmocuB779
Csa2G060440Melon (DHL92) v3.5.1cumeB108
Csa2G060440Melon (DHL92) v3.5.1cumeB139
Csa2G060440Watermelon (Charleston Gray)cuwcgB103
Csa2G060440Watermelon (Charleston Gray)cuwcgB150
Csa2G060440Watermelon (97103) v1cuwmB163
Csa2G060440Watermelon (97103) v1cuwmB170
Csa2G060440Cucurbita pepo (Zucchini)cpecuB006
Csa2G060440Cucurbita pepo (Zucchini)cpecuB098
Csa2G060440Cucurbita pepo (Zucchini)cpecuB106
Csa2G060440Cucurbita pepo (Zucchini)cpecuB373
Csa2G060440Cucurbita pepo (Zucchini)cpecuB666
Csa2G060440Cucurbita pepo (Zucchini)cpecuB811
Csa2G060440Bottle gourd (USVL1VR-Ls)culsiB098
Csa2G060440Bottle gourd (USVL1VR-Ls)culsiB132
Csa2G060440Cucumber (Gy14) v2cgybcuB018
Csa2G060440Cucumber (Gy14) v2cgybcuB056
Csa2G060440Melon (DHL92) v3.6.1cumedB104
Csa2G060440Melon (DHL92) v3.6.1cumedB132