Csa2G055570 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa2G055570
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Metallocarboxypeptidase inhibitor
Location	Chr2 : 4240255 .. 4240595 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAACGGCTCATCTCGCCGTGACCTTCTCTTGAATTCTCAAAACTTCTGTCGCTCCATCCCCGCAGGGGCAGAGAACCCATCGCTGTCTCGGCTGTGCTATCGGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGGGGTGGGCTTACTATTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGTGTTTACCGTGGGCACGATAACTGGTATTATTATATTTACCTCATTATATTATATAATTAGTTCATGGTGGATATGGAAGAAACTCATAATCTCAAATTTACAGGTTGAAGATTGCAATAGAAAATGTCTCATGA

mRNA sequence

ATGACAAACGGCTCATCTCGCCGTGACCTTCTCTTGAATTCTCAAAACTTCTGTCGCTCCATCCCCGCAGGGGCAGAGAACCCATCGCTGTCTCGGCTGTGCTATCGGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGGGGTGGGCTTACTATTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGTGTTTACCGTGGGCACGATAACTGGTTGAAGATTGCAATAGAAAATGTCTCATGA

Coding sequence (CDS)

ATGACAAACGGCTCATCTCGCCGTGACCTTCTCTTGAATTCTCAAAACTTCTGTCGCTCCATCCCCGCAGGGGCAGAGAACCCATCGCTGTCTCGGCTGTGCTATCGGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGGGGTGGGCTTACTATTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGTGTTTACCGTGGGCACGATAACTGGTTGAAGATTGCAATAGAAAATGTCTCATGA

Protein sequence

MTNGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWLKIAIENVS*

Homology

[Close]

BLAST of Csa2G055570 vs. TrEMBL
Match: A0A0A0LGR1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G055570 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 9.4e-44
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MTNGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 60
          MTNGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS
Sbjct: 1  MTNGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 60

Query: 61 YPLRTWLPSVYRGHDNWLKIAIENVS 87
          YPLRTWLPSVYRGHDNWLKIAIENVS
Sbjct: 61 YPLRTWLPSVYRGHDNWLKIAIENVS 86

[Close]

BLAST of Csa2G055570 vs. TrEMBL
Match: A0A165WVC1_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_014935 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 1.7e-37
Identity = 75/77 (97.40%), Postives = 75/77 (97.40%), Query Frame = 1


Query: 1  MTNGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 60
          M NGSSRRDLLLNSQNFCRSIPAGAENPSLS LCYRRLWGSRNRRALILGWAYYLDAFSS
Sbjct: 1  MINGSSRRDLLLNSQNFCRSIPAGAENPSLSWLCYRRLWGSRNRRALILGWAYYLDAFSS 60

Query: 61 YPLRTWLPSVYRGHDNW 78
          YPLRTWLPSVYRGHDNW
Sbjct: 61 YPLRTWLPSVYRGHDNW 77

[Close]

BLAST of Csa2G055570 vs. TrEMBL
Match: A0A078G2W2_BRANA (BnaC09g16480D protein OS=Brassica napus GN=BnaC09g29120D PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 3.8e-37
Identity = 74/77 (96.10%), Postives = 74/77 (96.10%), Query Frame = 1


Query: 1   MTNGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 60
           M NGSSRRDLLLNSQNFC SIPAGAENP LSRLCYRRLWGSRNRRALILGWAYYLDAFSS
Sbjct: 43  MINGSSRRDLLLNSQNFCHSIPAGAENPLLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 102

Query: 61  YPLRTWLPSVYRGHDNW 78
           YPLRTWLPSVYRGHDNW
Sbjct: 103 YPLRTWLPSVYRGHDNW 119

[Close]

BLAST of Csa2G055570 vs. TrEMBL
Match: A0A0D2ZTA1_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 3.8e-37
Identity = 74/77 (96.10%), Postives = 74/77 (96.10%), Query Frame = 1


Query: 1   MTNGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 60
           M NGSSRRDLLLNSQNFC SIPAGAENP LSRLCYRRLWGSRNRRALILGWAYYLDAFSS
Sbjct: 43  MINGSSRRDLLLNSQNFCHSIPAGAENPLLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 102

Query: 61  YPLRTWLPSVYRGHDNW 78
           YPLRTWLPSVYRGHDNW
Sbjct: 103 YPLRTWLPSVYRGHDNW 119

[Close]

BLAST of Csa2G055570 vs. TrEMBL
Match: M1D939_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400034831 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.1e-36
Identity = 75/78 (96.15%), Postives = 76/78 (97.44%), Query Frame = 1


Query: 1   MTNGSSRRDLLLNSQ-NFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFS 60
           M NGSSRRDLLLNSQ NFCRSIPAGAENPSLSRLCYR+LWGSRNRRALILGWAYYLDAFS
Sbjct: 43  MINGSSRRDLLLNSQKNFCRSIPAGAENPSLSRLCYRKLWGSRNRRALILGWAYYLDAFS 102

Query: 61  SYPLRTWLPSVYRGHDNW 78
           SYPLRTWLPSVYRGHDNW
Sbjct: 103 SYPLRTWLPSVYRGHDNW 120

[Close]

BLAST of Csa2G055570 vs. NCBI nr
Match: gi|700206001|gb|KGN61120.1| (hypothetical protein Csa_2G055570 [Cucumis sativus])

HSP 1 Score: 183.7 bits (465), Expect = 1.4e-43
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MTNGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 60
          MTNGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS
Sbjct: 1  MTNGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 60

Query: 61 YPLRTWLPSVYRGHDNWLKIAIENVS 87
          YPLRTWLPSVYRGHDNWLKIAIENVS
Sbjct: 61 YPLRTWLPSVYRGHDNWLKIAIENVS 86

[Close]

BLAST of Csa2G055570 vs. NCBI nr
Match: gi|1021039922|gb|KZM97703.1| (hypothetical protein DCAR_014935 [Daucus carota subsp. sativus])

HSP 1 Score: 162.9 bits (411), Expect = 2.5e-37
Identity = 75/77 (97.40%), Postives = 75/77 (97.40%), Query Frame = 1


Query: 1  MTNGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 60
          M NGSSRRDLLLNSQNFCRSIPAGAENPSLS LCYRRLWGSRNRRALILGWAYYLDAFSS
Sbjct: 1  MINGSSRRDLLLNSQNFCRSIPAGAENPSLSWLCYRRLWGSRNRRALILGWAYYLDAFSS 60

Query: 61 YPLRTWLPSVYRGHDNW 78
          YPLRTWLPSVYRGHDNW
Sbjct: 61 YPLRTWLPSVYRGHDNW 77

[Close]

BLAST of Csa2G055570 vs. NCBI nr
Match: gi|674871092|emb|CDY63594.1| (BnaUnng00820D [Brassica napus])

HSP 1 Score: 161.8 bits (408), Expect = 5.5e-37
Identity = 74/77 (96.10%), Postives = 74/77 (96.10%), Query Frame = 1


Query: 1   MTNGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 60
           M NGSSRRDLLLNSQNFC SIPAGAENP LSRLCYRRLWGSRNRRALILGWAYYLDAFSS
Sbjct: 43  MINGSSRRDLLLNSQNFCHSIPAGAENPLLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 102

Query: 61  YPLRTWLPSVYRGHDNW 78
           YPLRTWLPSVYRGHDNW
Sbjct: 103 YPLRTWLPSVYRGHDNW 119

[Close]

BLAST of Csa2G055570 vs. NCBI nr
Match: gi|675895250|ref|YP_009049724.1| (hypothetical protein (mitochondrion) [Capsicum annuum])

HSP 1 Score: 160.2 bits (404), Expect = 1.6e-36
Identity = 75/78 (96.15%), Postives = 76/78 (97.44%), Query Frame = 1


Query: 1   MTNGSSRRDLLLNSQ-NFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFS 60
           M NGSSRRDLLLNSQ NFCRSIPAGAENPSLSRLCYR+LWGSRNRRALILGWAYYLDAFS
Sbjct: 43  MINGSSRRDLLLNSQKNFCRSIPAGAENPSLSRLCYRKLWGSRNRRALILGWAYYLDAFS 102

Query: 61  SYPLRTWLPSVYRGHDNW 78
           SYPLRTWLPSVYRGHDNW
Sbjct: 103 SYPLRTWLPSVYRGHDNW 120

[Close]

BLAST of Csa2G055570 vs. NCBI nr
Match: gi|703131006|ref|XP_010104774.1| (hypothetical protein L484_018827 [Morus notabilis])

HSP 1 Score: 159.1 bits (401), Expect = 3.6e-36
Identity = 73/77 (94.81%), Postives = 73/77 (94.81%), Query Frame = 1


Query: 1  MTNGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 60
          M NGSSRRDLLLNSQNFC S PAGAENPSLS LCYRRLWGSRNRRALILGWAYYLDAFSS
Sbjct: 1  MINGSSRRDLLLNSQNFCHSTPAGAENPSLSWLCYRRLWGSRNRRALILGWAYYLDAFSS 60

Query: 61 YPLRTWLPSVYRGHDNW 78
          YPLRTWLPSVYRGHDNW
Sbjct: 61 YPLRTWLPSVYRGHDNW 77

The following BLAST results are available for this feature:

BLAST of Csa2G055570 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGR1_CUCSA	9.4e-44	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G055570 PE=4 SV=1	[more]
A0A165WVC1_DAUCA	1.7e-37	97.40	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_014935 PE=4 SV=1	[more]
A0A078G2W2_BRANA	3.8e-37	96.10	BnaC09g16480D protein OS=Brassica napus GN=BnaC09g29120D PE=4 SV=1	[more]
A0A0D2ZTA1_BRAOL	3.8e-37	96.10	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]
M1D939_SOLTU	1.1e-36	96.15	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400034831 PE=4 SV=1	[more]

BLAST of Csa2G055570 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206001\|gb\|KGN61120.1\|	1.4e-43	100.00	hypothetical protein Csa_2G055570 [Cucumis sativus]	[more]
gi\|1021039922\|gb\|KZM97703.1\|	2.5e-37	97.40	hypothetical protein DCAR_014935 [Daucus carota subsp. sativus]	[more]
gi\|674871092\|emb\|CDY63594.1\|	5.5e-37	96.10	BnaUnng00820D [Brassica napus]	[more]
gi\|675895250\|ref\|YP_009049724.1\|	1.6e-36	96.15	hypothetical protein (mitochondrion) [Capsicum annuum]	[more]
gi\|703131006\|ref\|XP_010104774.1\|	3.6e-36	94.81	hypothetical protein L484_018827 [Morus notabilis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa2G055570.1	Csa2G055570.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa2G055570	CSPI02G05860	Wild cucumber (PI 183967)	cpicuB065
Csa2G055570	CsGy2G005990	Cucumber (Gy14) v2	cgybcuB056

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa2G055570	Melon (DHL92) v3.6.1	cumedB111
Csa2G055570	Melon (DHL92) v3.6.1	cumedB132
Csa2G055570	Silver-seed gourd	carcuB0060
Csa2G055570	Silver-seed gourd	carcuB0805
Csa2G055570	Watermelon (97103) v2	cuwmbB109
Csa2G055570	Watermelon (97103) v2	cuwmbB150
Csa2G055570	Wax gourd	cuwgoB136
Csa2G055570	Wax gourd	cuwgoB212
Csa2G055570	Cucumber (Chinese Long) v2	cucuB012
Csa2G055570	Cucumber (Gy14) v1	cgycuB096
Csa2G055570	Cucumber (Gy14) v1	cgycuB098
Csa2G055570	Cucurbita maxima (Rimu)	cmacuB072
Csa2G055570	Cucurbita maxima (Rimu)	cmacuB076
Csa2G055570	Cucurbita maxima (Rimu)	cmacuB117
Csa2G055570	Cucurbita maxima (Rimu)	cmacuB786
Csa2G055570	Cucurbita moschata (Rifu)	cmocuB064
Csa2G055570	Cucurbita moschata (Rifu)	cmocuB779
Csa2G055570	Melon (DHL92) v3.5.1	cumeB114
Csa2G055570	Melon (DHL92) v3.5.1	cumeB139
Csa2G055570	Watermelon (Charleston Gray)	cuwcgB103
Csa2G055570	Watermelon (97103) v1	cuwmB163
Csa2G055570	Watermelon (97103) v1	cuwmB176
Csa2G055570	Cucurbita pepo (Zucchini)	cpecuB098
Csa2G055570	Cucurbita pepo (Zucchini)	cpecuB374
Csa2G055570	Bottle gourd (USVL1VR-Ls)	culsiB098
Csa2G055570	Bottle gourd (USVL1VR-Ls)	culsiB135