Csa2G034700 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa2G034700
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Pectinesterase inhibitor 1; contains IPR006501 (Pectinesterase inhibitor)
Location	Chr2 : 3435827 .. 3436418 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCATACAATCTGTTCTTTTAAGAAACCAACAATGAATTGCTGTCTAAATCTTACCTCTTTCATCCCAGCTCTTCTTTTGGCAGCTTTTTCCCTAACCGTTTTCCCTTCTCATGGAATCCCCCATGAAAATCTGGTCACCATTTGCTCTAAAACCTCCAATCCGTCGCTCTGTGAGAAAATCCTTAATAATGATTCCCGTACCGTCTCGGCCAACCTCCCTAAGCTCTCACTTATATGCAGCAATCTGGCCAAGAAACAAGCAGATCAAAACCTTGATACCTTCTACAAACTAAGTAAGAATGAGAGTGATCCCGAGGAGAAGAAAAGTTTTGAGCATTGTGTGAAGTATTACCATGAAATTCAATCAAATATCCAAAAAGCTTATCAGTTCTCACAGCAGAAGATCTTCAGAGAGAATGGTCCATTGGTGGCATCAAAGAGACTTGTTCTAAAGTGTAGTCAAACCATTAGAATCAATTCATTGTATATTGAAGTCATGAACAAACTTATGATCCTATGTTGTGATATTTCAATAAGCGTAAATCAATGTGCTGCTGCTAATGGTCACCATTCAGTAAATGTTTGATAAAA

mRNA sequence

ATGAATTGCTGTCTAAATCTTACCTCTTTCATCCCAGCTCTTCTTTTGGCAGCTTTTTCCCTAACCGTTTTCCCTTCTCATGGAATCCCCCATGAAAATCTGGTCACCATTTGCTCTAAAACCTCCAATCCGTCGCTCTGTGAGAAAATCCTTAATAATGATTCCCGTACCGTCTCGGCCAACCTCCCTAAGCTCTCACTTATATGCAGCAATCTGGCCAAGAAACAAGCAGATCAAAACCTTGATACCTTCTACAAACTAAGTAAGAATGAGAGTGATCCCGAGGAGAAGAAAAGTTTTGAGCATTGTGTGAAGTATTACCATGAAATTCAATCAAATATCCAAAAAGCTTATCAGTTCTCACAGCAGAAGATCTTCAGAGAGAATGGTCCATTGGTGGCATCAAAGAGACTTGTTCTAAAGTGTAGTCAAACCATTAGAATCAATTCATTGTATATTGAAGTCATGAACAAACTTATGATCCTATGTTGTGATATTTCAATAAGCGTAAATCAATGTGCTGCTGCTAATGGTCACCATTCAGTAAATGTTTGA

Coding sequence (CDS)

ATGAATTGCTGTCTAAATCTTACCTCTTTCATCCCAGCTCTTCTTTTGGCAGCTTTTTCCCTAACCGTTTTCCCTTCTCATGGAATCCCCCATGAAAATCTGGTCACCATTTGCTCTAAAACCTCCAATCCGTCGCTCTGTGAGAAAATCCTTAATAATGATTCCCGTACCGTCTCGGCCAACCTCCCTAAGCTCTCACTTATATGCAGCAATCTGGCCAAGAAACAAGCAGATCAAAACCTTGATACCTTCTACAAACTAAGTAAGAATGAGAGTGATCCCGAGGAGAAGAAAAGTTTTGAGCATTGTGTGAAGTATTACCATGAAATTCAATCAAATATCCAAAAAGCTTATCAGTTCTCACAGCAGAAGATCTTCAGAGAGAATGGTCCATTGGTGGCATCAAAGAGACTTGTTCTAAAGTGTAGTCAAACCATTAGAATCAATTCATTGTATATTGAAGTCATGAACAAACTTATGATCCTATGTTGTGATATTTCAATAAGCGTAAATCAATGTGCTGCTGCTAATGGTCACCATTCAGTAAATGTTTGA

Protein sequence

MNCCLNLTSFIPALLLAAFSLTVFPSHGIPHENLVTICSKTSNPSLCEKILNNDSRTVSANLPKLSLICSNLAKKQADQNLDTFYKLSKNESDPEEKKSFEHCVKYYHEIQSNIQKAYQFSQQKIFRENGPLVASKRLVLKCSQTIRINSLYIEVMNKLMILCCDISISVNQCAAANGHHSVNV*

Homology

[Close]

BLAST of Csa2G034700 vs. TrEMBL
Match: A0A0A0LK13_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G034700 PE=4 SV=1)

HSP 1 Score: 373.2 bits (957), Expect = 1.8e-100
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 1


Query: 1   MNCCLNLTSFIPALLLAAFSLTVFPSHGIPHENLVTICSKTSNPSLCEKILNNDSRTVSA 60
           MNCCLNLTSFIPALLLAAFSLTVFPSHGIPHENLVTICSKTSNPSLCEKILNNDSRTVSA
Sbjct: 1   MNCCLNLTSFIPALLLAAFSLTVFPSHGIPHENLVTICSKTSNPSLCEKILNNDSRTVSA 60

Query: 61  NLPKLSLICSNLAKKQADQNLDTFYKLSKNESDPEEKKSFEHCVKYYHEIQSNIQKAYQF 120
           NLPKLSLICSNLAKKQADQNLDTFYKLSKNESDPEEKKSFEHCVKYYHEIQSNIQKAYQF
Sbjct: 61  NLPKLSLICSNLAKKQADQNLDTFYKLSKNESDPEEKKSFEHCVKYYHEIQSNIQKAYQF 120

Query: 121 SQQKIFRENGPLVASKRLVLKCSQTIRINSLYIEVMNKLMILCCDISISVNQCAAANGHH 180
           SQQKIFRENGPLVASKRLVLKCSQTIRINSLYIEVMNKLMILCCDISISVNQCAAANGHH
Sbjct: 121 SQQKIFRENGPLVASKRLVLKCSQTIRINSLYIEVMNKLMILCCDISISVNQCAAANGHH 180

Query: 181 SVNV 185
           SVNV
Sbjct: 181 SVNV 184

[Close]

BLAST of Csa2G034700 vs. TrEMBL
Match: A0A061F340_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_026801 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.0e-26
Identity = 70/173 (40.46%), Postives = 100/173 (57.80%), Query Frame = 1


Query: 7   LTSFIPALL----LAAFSLTVFPSHGIPHENLVTICSKTSNPSLCEKILNNDSRTVSANL 66
           + S+ P LL    L AFS+ + PS  +P+E LV ICSKT NP LC  IL  D RT SA+L
Sbjct: 1   MASYTPRLLALTLLVAFSV-IHPSSSVPNETLVAICSKTYNPILCASILRGDPRTSSADL 60

Query: 67  PKLSLICSNLAKKQADQNLDTFYKLSKNESDPEEKKSFEHCVKYYHEIQSNIQKAYQFSQ 126
           P+LSL+  NL  +QA  N   F +   N +DP  KK F  CV+ Y  ++ N+ KAY  S+
Sbjct: 61  PELSLVSINLTIEQAANNSQVFVEFHDNTTDPALKKGFNSCVELYQLMEDNLDKAYHRSE 120

Query: 127 QKIFRENGPLVASKRLVLKCSQTIRINSLYIEVMNKLMILCCDISISVNQCAA 176
              +R    LV S    ++C+  + IN + I+ + + ++  C+ S+SVNQ  A
Sbjct: 121 GGDYRNITELVQSSNQAVECASALAINLVTIDALTRAVVSKCETSVSVNQYIA 172

[Close]

BLAST of Csa2G034700 vs. TrEMBL
Match: A0A061F4A7_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_026799 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.5e-17
Identity = 53/146 (36.30%), Postives = 80/146 (54.79%), Query Frame = 1


Query: 26  SHGIPHENLVTICSKTSNPSLCEKILNNDSRTVSANLPKLSLICSNLAKKQADQNLDTFY 85
           S G+  E L+TIC  T N   CE +L +D RT SA+LP LS+I   L +KQA +N  +F 
Sbjct: 22  SSGVEQETLMTICFPTENQEFCENLLMSDPRTSSADLPLLSVISIQLTEKQAKENHLSFM 81

Query: 86  KLSKNESDPEEKKSFEHCVKYYHEIQSNIQKAYQFSQQKIFRENGPLVASKRLVLKCSQT 145
           +L  N +DP  K     CV  Y E+ S +++AYQ S  K +++   L  + +L  +C   
Sbjct: 82  QLHDNATDPSMKDPLNKCVGIYEEMISKVEEAYQLSMAKRYKDISQLAETTKLAYQCENG 141

Query: 146 IRINSLYIEVMNKLMILCCDISISVN 172
           I + +     +++ MIL  + S  VN
Sbjct: 142 IPLKNNASMEISETMILTSETSDYVN 167

[Close]

BLAST of Csa2G034700 vs. TrEMBL
Match: A0A061FB77_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_026800 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.7e-16
Identity = 56/160 (35.00%), Postives = 85/160 (53.12%), Query Frame = 1


Query: 13  ALLLAAFSLTVFPSHGIPHENLVTICSKTSNPSLCEKILNNDSRTVSANLPKLSLICSNL 72
           ALLL   SL +  S+G+  + L TICS T N  +C +IL +D RT SA+LP LS I   L
Sbjct: 11  ALLLLVASLFICHSYGVTEDVLATICSDTQNQEICVEILESDPRTKSADLPLLSAISIEL 70

Query: 73  AKKQADQNLDTFYKLSKNESDPEEKKSFEHCVKYYHEIQSNIQKAYQFSQQKIFRENGPL 132
           A K+A +  DTF K   N +DP  K S+  CV+ Y +++  ++   + S++K F++   +
Sbjct: 71  AMKRASKTFDTFSKFRDNSTDPGLKSSYGKCVEIYQDMKDKLEADQELSRKKQFKKITDV 130

Query: 133 VASKRLVLKCSQTIRINSLYIEVMNKLMILCCDISISVNQ 173
                L   C   +  +S     +   M+L    +I VNQ
Sbjct: 131 GGLTTLAYNCENGLPSDS-PTGAITVDMLLTIQTAIYVNQ 169

[Close]

BLAST of Csa2G034700 vs. NCBI nr
Match: gi|700205898|gb|KGN61017.1| (hypothetical protein Csa_2G034700 [Cucumis sativus])

HSP 1 Score: 373.2 bits (957), Expect = 2.6e-100
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 1


Query: 1   MNCCLNLTSFIPALLLAAFSLTVFPSHGIPHENLVTICSKTSNPSLCEKILNNDSRTVSA 60
           MNCCLNLTSFIPALLLAAFSLTVFPSHGIPHENLVTICSKTSNPSLCEKILNNDSRTVSA
Sbjct: 1   MNCCLNLTSFIPALLLAAFSLTVFPSHGIPHENLVTICSKTSNPSLCEKILNNDSRTVSA 60

Query: 61  NLPKLSLICSNLAKKQADQNLDTFYKLSKNESDPEEKKSFEHCVKYYHEIQSNIQKAYQF 120
           NLPKLSLICSNLAKKQADQNLDTFYKLSKNESDPEEKKSFEHCVKYYHEIQSNIQKAYQF
Sbjct: 61  NLPKLSLICSNLAKKQADQNLDTFYKLSKNESDPEEKKSFEHCVKYYHEIQSNIQKAYQF 120

Query: 121 SQQKIFRENGPLVASKRLVLKCSQTIRINSLYIEVMNKLMILCCDISISVNQCAAANGHH 180
           SQQKIFRENGPLVASKRLVLKCSQTIRINSLYIEVMNKLMILCCDISISVNQCAAANGHH
Sbjct: 121 SQQKIFRENGPLVASKRLVLKCSQTIRINSLYIEVMNKLMILCCDISISVNQCAAANGHH 180

Query: 181 SVNV 185
           SVNV
Sbjct: 181 SVNV 184

[Close]

BLAST of Csa2G034700 vs. NCBI nr
Match: gi|590644911|ref|XP_007031213.1| (Uncharacterized protein TCM_026801 [Theobroma cacao])

HSP 1 Score: 128.3 bits (321), Expect = 1.4e-26
Identity = 70/173 (40.46%), Postives = 100/173 (57.80%), Query Frame = 1


Query: 7   LTSFIPALL----LAAFSLTVFPSHGIPHENLVTICSKTSNPSLCEKILNNDSRTVSANL 66
           + S+ P LL    L AFS+ + PS  +P+E LV ICSKT NP LC  IL  D RT SA+L
Sbjct: 1   MASYTPRLLALTLLVAFSV-IHPSSSVPNETLVAICSKTYNPILCASILRGDPRTSSADL 60

Query: 67  PKLSLICSNLAKKQADQNLDTFYKLSKNESDPEEKKSFEHCVKYYHEIQSNIQKAYQFSQ 126
           P+LSL+  NL  +QA  N   F +   N +DP  KK F  CV+ Y  ++ N+ KAY  S+
Sbjct: 61  PELSLVSINLTIEQAANNSQVFVEFHDNTTDPALKKGFNSCVELYQLMEDNLDKAYHRSE 120

Query: 127 QKIFRENGPLVASKRLVLKCSQTIRINSLYIEVMNKLMILCCDISISVNQCAA 176
              +R    LV S    ++C+  + IN + I+ + + ++  C+ S+SVNQ  A
Sbjct: 121 GGDYRNITELVQSSNQAVECASALAINLVTIDALTRAVVSKCETSVSVNQYIA 172

[Close]

BLAST of Csa2G034700 vs. NCBI nr
Match: gi|731416174|ref|XP_010659809.1| (PREDICTED: uncharacterized protein LOC104881393 [Vitis vinifera])

HSP 1 Score: 112.1 bits (279), Expect = 1.1e-21
Identity = 64/164 (39.02%), Postives = 93/164 (56.71%), Query Frame = 1


Query: 9   SFIPALLLAAFSLTVFPSHGIPHENLVTICSKTSNPSLCEKILNNDSRTVSANLPKLSLI 68
           +F+ A LL  FSL   P+ G+  E L +ICS+T N  +CE IL +   T SA+L  LSLI
Sbjct: 8   TFMFAALLMVFSLFTSPTSGVTQETLASICSQTQNQEICEGILESVPGTTSADLHGLSLI 67

Query: 69  CSNLAKKQADQNLDTFYKLSKNESDPEEKKSFEHCVKYYHEIQSNIQKAYQFSQQKIFRE 128
             NL  KQ   N DTF K   N +D   K+SF +CV  Y+ I   ++ AYQ S++K +  
Sbjct: 68  SINLTMKQGSSNYDTFTKFMDNSTDTALKESFRNCVSLYNSIMEMLKVAYQLSEKKEYES 127

Query: 129 NGPLVASKRLVLKCSQTIRINSLYIEVMNKLMILCCDISISVNQ 173
                 S+ L   C+  + I+S   + +++ MI+ C+ S+SVNQ
Sbjct: 128 ITQPGESQTLAYNCANGLPIDS-PTDGISRDMIITCETSVSVNQ 170

[Close]

BLAST of Csa2G034700 vs. NCBI nr
Match: gi|590644903|ref|XP_007031211.1| (Uncharacterized protein TCM_026799 [Theobroma cacao])

HSP 1 Score: 97.1 bits (240), Expect = 3.5e-17
Identity = 53/146 (36.30%), Postives = 80/146 (54.79%), Query Frame = 1


Query: 26  SHGIPHENLVTICSKTSNPSLCEKILNNDSRTVSANLPKLSLICSNLAKKQADQNLDTFY 85
           S G+  E L+TIC  T N   CE +L +D RT SA+LP LS+I   L +KQA +N  +F 
Sbjct: 22  SSGVEQETLMTICFPTENQEFCENLLMSDPRTSSADLPLLSVISIQLTEKQAKENHLSFM 81

Query: 86  KLSKNESDPEEKKSFEHCVKYYHEIQSNIQKAYQFSQQKIFRENGPLVASKRLVLKCSQT 145
           +L  N +DP  K     CV  Y E+ S +++AYQ S  K +++   L  + +L  +C   
Sbjct: 82  QLHDNATDPSMKDPLNKCVGIYEEMISKVEEAYQLSMAKRYKDISQLAETTKLAYQCENG 141

Query: 146 IRINSLYIEVMNKLMILCCDISISVN 172
           I + +     +++ MIL  + S  VN
Sbjct: 142 IPLKNNASMEISETMILTSETSDYVN 167

[Close]

BLAST of Csa2G034700 vs. NCBI nr
Match: gi|590644907|ref|XP_007031212.1| (Uncharacterized protein TCM_026800 [Theobroma cacao])

HSP 1 Score: 93.6 bits (231), Expect = 3.9e-16
Identity = 56/160 (35.00%), Postives = 85/160 (53.12%), Query Frame = 1


Query: 13  ALLLAAFSLTVFPSHGIPHENLVTICSKTSNPSLCEKILNNDSRTVSANLPKLSLICSNL 72
           ALLL   SL +  S+G+  + L TICS T N  +C +IL +D RT SA+LP LS I   L
Sbjct: 11  ALLLLVASLFICHSYGVTEDVLATICSDTQNQEICVEILESDPRTKSADLPLLSAISIEL 70

Query: 73  AKKQADQNLDTFYKLSKNESDPEEKKSFEHCVKYYHEIQSNIQKAYQFSQQKIFRENGPL 132
           A K+A +  DTF K   N +DP  K S+  CV+ Y +++  ++   + S++K F++   +
Sbjct: 71  AMKRASKTFDTFSKFRDNSTDPGLKSSYGKCVEIYQDMKDKLEADQELSRKKQFKKITDV 130

Query: 133 VASKRLVLKCSQTIRINSLYIEVMNKLMILCCDISISVNQ 173
                L   C   +  +S     +   M+L    +I VNQ
Sbjct: 131 GGLTTLAYNCENGLPSDS-PTGAITVDMLLTIQTAIYVNQ 169

The following BLAST results are available for this feature:

BLAST of Csa2G034700 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LK13_CUCSA	1.8e-100	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G034700 PE=4 SV=1	[more]
A0A061F340_THECC	1.0e-26	40.46	Uncharacterized protein OS=Theobroma cacao GN=TCM_026801 PE=4 SV=1	[more]
A0A061F4A7_THECC	2.5e-17	36.30	Uncharacterized protein OS=Theobroma cacao GN=TCM_026799 PE=4 SV=1	[more]
A0A061FB77_THECC	2.7e-16	35.00	Uncharacterized protein OS=Theobroma cacao GN=TCM_026800 PE=4 SV=1	[more]

BLAST of Csa2G034700 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700205898\|gb\|KGN61017.1\|	2.6e-100	100.00	hypothetical protein Csa_2G034700 [Cucumis sativus]	[more]
gi\|590644911\|ref\|XP_007031213.1\|	1.4e-26	40.46	Uncharacterized protein TCM_026801 [Theobroma cacao]	[more]
gi\|731416174\|ref\|XP_010659809.1\|	1.1e-21	39.02	PREDICTED: uncharacterized protein LOC104881393 [Vitis vinifera]	[more]
gi\|590644903\|ref\|XP_007031211.1\|	3.5e-17	36.30	Uncharacterized protein TCM_026799 [Theobroma cacao]	[more]
gi\|590644907\|ref\|XP_007031212.1\|	3.9e-16	35.00	Uncharacterized protein TCM_026800 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006501	Pectinesterase_inhib_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0004857	enzyme inhibitor activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043086	negative regulation of catalytic activity
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0005985	sucrose metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004857	enzyme inhibitor activity
molecular_function	GO:0030599	pectinesterase activity
molecular_function	GO:0046910	pectinesterase inhibitor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa2G034700.1	Csa2G034700.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006501	Pectinesterase inhibitor domain	GENE3D	G3DSA:1.20.140.40		coord: 35..128 score: 1.5
IPR006501	Pectinesterase inhibitor domain	PFAM	PF04043	PMEI	coord: 35..120 score: 5.
IPR006501	Pectinesterase inhibitor domain	SMART	SM00856	PMEI_2	coord: 30..170 score: 0.
IPR006501	Pectinesterase inhibitor domain	TIGRFAMs	TIGR01614	TIGR01614	coord: 14..124 score: 1.2
IPR006501	Pectinesterase inhibitor domain	unknown	SSF101148	Plant invertase/pectin methylesterase inhibitor	coord: 36..124 score: 2.62

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa2G034700	Lsi11G006520	Bottle gourd (USVL1VR-Ls)	culsiB098
Csa2G034700	MELO3C031526.2	Melon (DHL92) v3.6.1	cumedB132
Csa2G034700	Bhi06G001355	Wax gourd	cuwgoB128
Csa2G034700	CSPI02G04880	Wild cucumber (PI 183967)	cpicuB065
Csa2G034700	Cucsa.090470	Cucumber (Gy14) v1	cgycuB096
Csa2G034700	CmoCh05G010740	Cucurbita moschata (Rifu)	cmocuB784
Csa2G034700	Cp4.1LG11g08620	Cucurbita pepo (Zucchini)	cpecuB104
Csa2G034700	CsGy2G005030	Cucumber (Gy14) v2	cgybcuB056
Csa2G034700	Carg11992	Silver-seed gourd	carcuB0591

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa2G034700	Cucurbita moschata (Rifu)	cmocuB063
Csa2G034700	Cucurbita moschata (Rifu)	cmocuB342
Csa2G034700	Melon (DHL92) v3.5.1	cumeB112
Csa2G034700	Melon (DHL92) v3.5.1	cumeB139
Csa2G034700	Watermelon (Charleston Gray)	cuwcgB122
Csa2G034700	Watermelon (Charleston Gray)	cuwcgB135
Csa2G034700	Watermelon (Charleston Gray)	cuwcgB157
Csa2G034700	Watermelon (97103) v1	cuwmB115
Csa2G034700	Watermelon (97103) v1	cuwmB147
Csa2G034700	Melon (DHL92) v3.6.1	cumedB107
Csa2G034700	Silver-seed gourd	carcuB0950
Csa2G034700	Watermelon (97103) v2	cuwmbB118
Csa2G034700	Watermelon (97103) v2	cuwmbB152
Csa2G034700	Cucurbita maxima (Rimu)	cmacuB074
Csa2G034700	Cucurbita maxima (Rimu)	cmacuB791