Csa2G008040 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G008040
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionSmall nuclear RNA activating complex (SNAPc), subunit SNAP43 protein; contains IPR019188 (Small nuclear RNA activating complex (SNAPc), subunit SNAP43)
LocationChr2 : 1391794 .. 1396197 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAACCCCTCATGGAAGGATTTTCCATTACTATGCATTGAGGTGGTGTTCTTTTAGTAACTTACATAATACTCAGAAATTTGTGGATGCAATGGATCTCTCTCCATTCAGGCTTGATATTGATGAGTTGATCAATGAATTTGCTGAGGTAGTTCTGAAGTTATCGTGTTTGTTACAACTATATACTAAAAAGATTTGTTAGTTTTTAAAATTTTAACCCATGATGATGTTTGGTGGTTTGCAGTGTGGATTCACATCTTTTGTTGATATGAAGAAAGTATGGATTGGAAGAAAATTCACGTACATATTTGAGGCTGCTCCTTCTACCAACTTGGCCTTCTTTATGCAATCAATCTTTGCCCAATCAATTAGTAGGATCTCTCTCTCTCGCATTCATTTTTGCATTAAATTCTTGGCAATTTGATATTTCTTATGAATTATGATGAACAAAGCTGGTCGTAGCTTCTTGTTTGTGGAGTTGAGAAAAGTTTCAAAACTTCTGTATGCAATCAATTAGTAAGCTCTCCCATGATAGACTTGGTCATTTTTGCATTAATTTCTTGGCAACTTGATATTTCTTCTGAATTATGATGAACAAAGCTGGTGCGATCTTCTTTTTTGTGGAATTAAGAAGAAGCTTAATACTTCTTTACGCAATCAATTCATTCTCAATCAATTAATAAGCTCTCCCACGATAAACTTGGTCGTTTTTTGCATTAATCTCTTGGCAACTTCAAATTTTTTCTGAATTATGATGAACAAAGCTGGTGCTGGCTTCTTGTTTGTGGAACTAAGAAGAATTTTAATACCTTGTGGAATCAATCTTTGCCCACTCATTTAGTAGTCTCTCCATAAACTTAGTCATTTTTTTTTTAATTCTTGTCAACTTGATGTTTTTTCTGAATTATGATGAAGAAAGTTGGTGCTAGCTTCTTGTTTGTGGAAGTAAGAAGAATTTTATTACTTCTTTTTACAGGTCACATGCTCAGTACTGCTTCTTTGCCACACAGATTAGGTGGCCTTTACTGCCTTTACTGCCTTTATGAGACACAACCCTTTAGGCCCCCTTACAAAATCTACCTGTCTATTGGTATGATTCTTCAATGTTTTTAATATAAAAGCATTCTATTTCTTTAATAATTATCTGATAGATATGCAAGTTTCCCGCAGTCTGCTTGGTGGACATCTCTTGATATCATCTATACTTGTTCTTATTTGGTTATTTTACGATGTTTCCACTTTTATAGGAGAGTTGAAGAAACTGAAAGAACTCGTTGTTGATGCAAAAGAAAATAATGTAAAAGTGGTATCTTTTGTGGTGAAAAGAATGTTAGAAAAGAACATGTTTCTCTTTGGATCTGTGGACATGAATGAGAGTGCTGCTTTGGAAACGGTGAATCAGCTAACAGAATTGCAAAATGCTCGTGTTCAAGTAGCCTATAAAAAGTATGTTCGAGAAACAGACAGTTATTTTTATTCCAGATATATGTTTGTCATGATATCTTTAGTACTTTCTTAATTGTTATCTTTGATGATTAGGTTGTTTAATGATACGCCGATTGGAAATTATATCCATATGGACTTGGTAAGTAAAAAGTACAAAAAACATATATTTTAGTACCTTTTTAACTTGCATTATGAACTCTTGGAACTTTGTACATGAAAAGAGTTCCATGTTATGATCAACTGTTTATCTAGCCATTCCTTGAATTCTTCTTCACTCTTGAAAATGTAGGGGATGGAAGTTGGTTCAAATATATTAACAAAGATGTCAACAGATTATTCAGAGGCCAAGAAACTTGCATTATATGGTAACTTTGTTCTTTCCAACCTGCTTGTCTTCGTGACATTTGTGTTAATCATATTTTTCTATTACTGTTTATCTGACTACTTTTACCCACTTGTTTCTGTCTTTTGTGTTTTGGCACTTCATTTATTTCTAAAGAAGCAAGTAAGATAGTGGATGTTCAGGACATAAAGCACATAGCAGAAGATGAGAAATTGATTGGAGATACAGTTGAAAAGATTGCTGAGGATTGGAATGTTCAGAGAGGAGTTTTTTATGAACAAACTGGACTCGACCAACAGTCTGTTCCAGTCGAGGCAGATCAGCAGTTACTTGAAGATCATGCCGATGTAAATTTTGATAAGGAACTCGAAAGAATGCTAACTGATGTTTAAACAAGGTACAGAGTCCTCCTAATCCTTTAACTATCGCAAATGGGCTTTTGAACTGCCAAATTGTCTTGTTATGACACTTAGCTAGCTGAAGTCACATGACATTGAAAAGAGAGATGAAACCCTCAATCACACATCCTTATTTCGCAATTCAGAGCTGTTTTCAATGAGGAAGGCCAAAGTTAAGCCTTCTAAGCCACAGTGAATGAAGCAGCATGTGAATTACATCAAATGGCTTTGCAGGCCTATTTATCTTGAAATGCCTCTTTACTTTGATCACTCCTTTGTACAGCTTCAAATACTTCTCTTCTGAGATAGCTTTCAAGATTGTTTTTATTTCTGGTATTCTTTGAACAGGTATCTGCACTGAAAATCGACTCCAATCTAGAACATCGCTGAATGGTAACGAATAGTTATCAGAAATGATCACTGGAACACAACCGCCATAGATGGCTTCTACCACCCTCGGGCTTGCCACTTCATAGCCACTAGGGCAGAGACAAAACTTGCTTTCTCCAATCAATTTGGTGTAATTTTGGGTCTTAGGAAGGTATTCATGAACCTGAACTTCATTGTCCTTTTCCTTCCAATGCTTGATCAAAATCTTCCTGATGTATCCATGAGCTCCTCCAGCGAAGAAAGCTAGAATTGGGCGGCGTTCTGGTGGCTGGCCTAAGTCCGGTGGCCCTAATGTTCCAGGGTGGATGTTGATTTCTGGGAGTGGAATATCTATGTTGGGGCGAAAGCCTTCTGTGATGTTTGCATTGCACACTACCCTGATGAAGTTCTTGAACAGTTGGGGGTTGGCATCTGAGATTTCTGGTGCCTTGAAAATCGCCATTAGAAGTTAGGAGGAAGCATTATAAAAAGAAGAAACAAAAACTTGATAACAAGTAGAATCTTAATTCTTACCCAATCATGGCATGAAACCACAAAATGATCAGCGCCATTGCTCCGGTTCCAATATGGATACCTGTTGGCAACAACTCGAATGTAATCAGTTGTCACACGGTGCATCCGATCACGGTTGTAGTCAGCTGGAGAAGTGATTGGCCTATAAATGAAATGAATGATGTTGGTGATACTCAAAGGAAGAAGAAATACATGAGCTTCATCAGGATGACTGGCTCTAAAAGGACTCTTGCTGCAATCTAACTCATCTATAAATTGGCCTTCAATGGCATATATGCTATTCAATGGACCATCATGGAACAGAGGCTGTTCTCCTTCTCTATAACTCCAAACCTTGAACCTCTTCACCATTTCTATGTGGCTTCTGCATAACATTTTGGATATACTGTAAGCATATTGGTGGAAATGATTTTTGTTTTGGGTTATTGTTTCATTGCATTAGATAGTACTTTCAGGATTATAATTATAATTAAGTGTATAAAAACATTTTTAAAGAATTGCAACTATAGCAAAATCTATCGATAGAAGCCTCCCATTACCAACAGACTCAGAGAACTAGATGTAAATTTTGCTATATTTGCATTTCTTTTTCAGTCTGATATCTCTTAAAATACTTTGAGTTCGATTGCTATATTTGCAATTGTCCCTATTTATTAATAGTAACTCAAATGTTATATAATACTTTTAGTGTTTGTTCCTTTTTCAGTAGGTAAAGGAAAACTCAACTGATGAAAAGCATAAGGATTTCTGTAAATGGGGCCTCTGGGAATGTAAGTTTCTTTCTTCTCTGATGTGAAGTTTTTCCACAAAACTGCCTTTCGAATGGACGCTCGTGCTTCAGCCAAACTTGCTTCAATCATCTTCAAACTCGTCTTCTTCTTCTTCTGCTCCATAAACCTCAAAATGAAAACTGAAAAAAGAAAATTTGACAACAGCAAAAACAATAAAGAGAAAGAAGGGAGAGCCCTTTTTTTTTTTGTCTATTCTTACTTTGATGAATATAGCCTTCATGGGTTTGTTGCCTTCTCTCATGGAGTTTATGGGAAAGAAAGAAGAAGCTAATGGAAAAGCTTCAGTTGCTTGTGACAGGTCCAACAATGGTGGAACAGAGAAAAACTGAAGGAAAACAAGAAGAAGAAGACTTGCTGGTAGTAGCAAGCAATAGAGACGGCAGCTGAAGCTTGCCATGGCCAAACTCTTCTTTTCAAGCTCTTTCTCTTAGCTTTTTTTCTTTTTAAGTGCTCAATAAAAGAGAAACTGTAGAGATTGCCAGTAGAAAAAGGTTTGAATTTCGTCATTGTTCCTCCAAAATCGA

mRNA sequence

ATGGATCTCTCTCCATTCAGGCTTGATATTGATGAGTTGATCAATGAATTTGCTGAGTGTGGATTCACATCTTTTGTTGATATGAAGAAAGTATGGATTGGAAGAAAATTCACGTACATATTTGAGGCTGCTCCTTCTACCAACTTGGCCTTCTTTATGCAATCAATCTTTGCCCAATCAATTAGTCACATGCTCAGTACTGCTTCTTTGCCACACAGATTAGGTGGCCTTTACTGCCTTTACTGCCTTTATGAGACACAACCCTTTAGGCCCCCTTACAAAATCTACCTGTCTATTGGAGAGTTGAAGAAACTGAAAGAACTCGTTGTTGATGCAAAAGAAAATAATGTAAAAGTGGTATCTTTTGTGGTGAAAAGAATGTTAGAAAAGAACATGTTTCTCTTTGGATCTGTGGACATGAATGAGAGTGCTGCTTTGGAAACGGTGAATCAGCTAACAGAATTGCAAAATGCTCGTGTTCAAGTAGCCTATAAAAAGTTGTTTAATGATACGCCGATTGGAAATTATATCCATATGGACTTGGGGATGGAAGTTGGTTCAAATATATTAACAAAGATGTCAACAGATTATTCAGAGGCCAAGAAACTTGCATTATATGAAGCAAGTAAGATAGTGGATGTTCAGGACATAAAGCACATAGCAGAAGATGAGAAATTGATTGGAGATACAGTTGAAAAGATTGCTGAGGATTGGAATGTTCAGAGAGGAGTTTTTTATGAACAAACTGGACTCGACCAACAGTCTGTTCCAGTCGAGGCAGATCAGCAGTTACTTGAAGATCATGCCGATGTAAATTTTGATAAGGAACTCGAAAGAATGCTAACTGATGTTTAA

Coding sequence (CDS)

ATGGATCTCTCTCCATTCAGGCTTGATATTGATGAGTTGATCAATGAATTTGCTGAGTGTGGATTCACATCTTTTGTTGATATGAAGAAAGTATGGATTGGAAGAAAATTCACGTACATATTTGAGGCTGCTCCTTCTACCAACTTGGCCTTCTTTATGCAATCAATCTTTGCCCAATCAATTAGTCACATGCTCAGTACTGCTTCTTTGCCACACAGATTAGGTGGCCTTTACTGCCTTTACTGCCTTTATGAGACACAACCCTTTAGGCCCCCTTACAAAATCTACCTGTCTATTGGAGAGTTGAAGAAACTGAAAGAACTCGTTGTTGATGCAAAAGAAAATAATGTAAAAGTGGTATCTTTTGTGGTGAAAAGAATGTTAGAAAAGAACATGTTTCTCTTTGGATCTGTGGACATGAATGAGAGTGCTGCTTTGGAAACGGTGAATCAGCTAACAGAATTGCAAAATGCTCGTGTTCAAGTAGCCTATAAAAAGTTGTTTAATGATACGCCGATTGGAAATTATATCCATATGGACTTGGGGATGGAAGTTGGTTCAAATATATTAACAAAGATGTCAACAGATTATTCAGAGGCCAAGAAACTTGCATTATATGAAGCAAGTAAGATAGTGGATGTTCAGGACATAAAGCACATAGCAGAAGATGAGAAATTGATTGGAGATACAGTTGAAAAGATTGCTGAGGATTGGAATGTTCAGAGAGGAGTTTTTTATGAACAAACTGGACTCGACCAACAGTCTGTTCCAGTCGAGGCAGATCAGCAGTTACTTGAAGATCATGCCGATGTAAATTTTGATAAGGAACTCGAAAGAATGCTAACTGATGTTTAA

Protein sequence

MDLSPFRLDIDELINEFAECGFTSFVDMKKVWIGRKFTYIFEAAPSTNLAFFMQSIFAQSISHMLSTASLPHRLGGLYCLYCLYETQPFRPPYKIYLSIGELKKLKELVVDAKENNVKVVSFVVKRMLEKNMFLFGSVDMNESAALETVNQLTELQNARVQVAYKKLFNDTPIGNYIHMDLGMEVGSNILTKMSTDYSEAKKLALYEASKIVDVQDIKHIAEDEKLIGDTVEKIAEDWNVQRGVFYEQTGLDQQSVPVEADQQLLEDHADVNFDKELERMLTDV*
Homology
[Close]
BLAST of Csa2G008040 vs. TrEMBL
Match: A0A0A0LL25_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G008040 PE=4 SV=1)

HSP 1 Score: 564.7 bits (1454), Expect = 6.4e-158
Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 1 

Query: 1   MDLSPFRLDIDELINEFAECGFTSFVDMKKVWIGRKFTYIFEAAPSTNLAFFMQSIFAQS 60
           MDLSPFRLDIDELINEFAECGFTSFVDMKKVWIGRKFTYIFEAAPSTNLAFFMQSIFAQS
Sbjct: 1   MDLSPFRLDIDELINEFAECGFTSFVDMKKVWIGRKFTYIFEAAPSTNLAFFMQSIFAQS 60

Query: 61  ISHMLSTASLPHRLGGLYCLYCLYETQPFRPPYKIYLSIGELKKLKELVVDAKENNVKVV 120
           ISHMLSTASLPHRLGGLYCLYCLYETQPFRPPYKIYLSIGELKKLKELVVDAKENNVKVV
Sbjct: 61  ISHMLSTASLPHRLGGLYCLYCLYETQPFRPPYKIYLSIGELKKLKELVVDAKENNVKVV 120

Query: 121 SFVVKRMLEKNMFLFGSVDMNESAALETVNQLTELQNARVQVAYKKLFNDTPIGNYIHMD 180
           SFVVKRMLEKNMFLFGSVDMNESAALETVNQLTELQNARVQVAYKKLFNDTPIGNYIHMD
Sbjct: 121 SFVVKRMLEKNMFLFGSVDMNESAALETVNQLTELQNARVQVAYKKLFNDTPIGNYIHMD 180

Query: 181 LGMEVGSNILTKMSTDYSEAKKLALYEASKIVDVQDIKHIAEDEKLIGDTVEKIAEDWNV 240
           LGMEVGSNILTKMSTDYSEAKKLALYEASKIVDVQDIKHIAEDEKLIGDTVEKIAEDWNV
Sbjct: 181 LGMEVGSNILTKMSTDYSEAKKLALYEASKIVDVQDIKHIAEDEKLIGDTVEKIAEDWNV 240

Query: 241 QRGVFYEQTGLDQQSVPVEADQQLLEDHADVNFDKELERMLTDV 285
           QRGVFYEQTGLDQQSVPVEADQQLLEDHADVNFDKELERMLTDV
Sbjct: 241 QRGVFYEQTGLDQQSVPVEADQQLLEDHADVNFDKELERMLTDV 284

[Close]
BLAST of Csa2G008040 vs. TrEMBL
Match: M5XGB0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009480mg PE=4 SV=1)

HSP 1 Score: 372.9 bits (956), Expect = 3.6e-100
Identity = 182/290 (62.76%), Postives = 238/290 (82.07%), Query Frame = 1 

Query: 1   MDLSPFRLDIDELINEFAECGFTSFVDMKKVWIGRKFTYIFEAAPSTNLAFFMQSIFAQS 60
           MDL+PF+ DIDELI+ FAE   TS  DMK++W+ +KF+YI+EA PSTNLAFFMQS++A S
Sbjct: 1   MDLTPFKRDIDELIDAFAEGESTSLADMKRIWLSKKFSYIYEARPSTNLAFFMQSLYAHS 60

Query: 61  ISHMLSTASLPHRLGGLYCLYCLYETQPFRPPYKIYLSIGELKKLKELVVDAKENNVKVV 120
           I +++ TA+L HRLGGLYCL+CLYETQPF+PP+KIYLS+ ELKKL++LV++AKE++++VV
Sbjct: 61  IGYIIGTATLSHRLGGLYCLFCLYETQPFKPPFKIYLSLEELKKLRKLVINAKEHDIRVV 120

Query: 121 SFVVKRMLEKNMFLFGSVDMNESAALETVNQLTELQNARVQVAYKKLFNDTPIGNYIHMD 180
           S +VKRMLEKN+FLFGSVD NE +  ETV+QLT+LQNARVQVAYK+LF +T I +++HMD
Sbjct: 121 SALVKRMLEKNVFLFGSVDTNEGSFTETVDQLTQLQNARVQVAYKELFANTKIEDFLHMD 180

Query: 181 LGMEVGSNILTKMSTDYSEAKKLALYEASKIVDVQDIKHIAEDEKLIGDTVEKIAEDWNV 240
           LGMEV  N+L KMSTDY+EAKK+A+ EASK+VDVQDIKHI+ED++L+GD VEK+   W+ 
Sbjct: 181 LGMEVDLNMLKKMSTDYAEAKKIAINEASKVVDVQDIKHISEDKELVGDAVEKMVGQWDA 240

Query: 241 QRGVFYEQTGL-------DQQSVPVEADQQLLEDHADVNFDKELERMLTD 284
           QR VFY+QTG        +QQ  P +   QL     D NFD+ELE++L++
Sbjct: 241 QREVFYQQTGANQKLPEGEQQLEPQQLQLQLQLLSDDENFDQELEQLLSE 290

[Close]
BLAST of Csa2G008040 vs. TrEMBL
Match: U5G664_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s06470g PE=4 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 1.4e-99
Identity = 178/263 (67.68%), Postives = 220/263 (83.65%), Query Frame = 1 

Query: 1   MDLSPFRLDIDELINEFAECGFTSFVDMKKVWIGRKFTYIFEAAPSTNLAFFMQSIFAQS 60
           MDLSPF+LDIDELINEF E  FT+  DMK+VW+ RKFTYIFEA+P T LAFFMQS++A +
Sbjct: 1   MDLSPFKLDIDELINEFVEGEFTTLADMKRVWLSRKFTYIFEASPPTKLAFFMQSLYAHT 60

Query: 61  ISHMLSTASLPHRLGGLYCLYCLYETQPFRPPYKIYLSIGELKKLKELVVDAKENNVKVV 120
           I HM+ST+SL  RLGGLYCLYCLYETQPF+PP+KIY S+GELKKLK LV++AKE+ +KVV
Sbjct: 61  IGHMISTSSLSQRLGGLYCLYCLYETQPFKPPFKIYFSLGELKKLKNLVINAKEHGIKVV 120

Query: 121 SFVVKRMLEKNMFLFGSVDMNESAALETVNQLTELQNARVQVAYKKLFNDTPIGNYIHMD 180
             +VKRMLEKNMFLFG VD++E +  ETVNQLTELQ+ARVQVAYKKLF+DT I  ++HMD
Sbjct: 121 PALVKRMLEKNMFLFGFVDLHEGSVSETVNQLTELQDARVQVAYKKLFDDTRIEQFLHMD 180

Query: 181 LGMEVGSNILTKMSTDYSEAKKLALYEASKIVDVQDIKHIAEDEKLIGDTVEKIAEDWNV 240
           +GME    +L KMST+Y+EAKK A+ EA+K VDVQ+I+HI++D + IGD VE+I E+WNV
Sbjct: 181 MGMEFDLEMLKKMSTEYAEAKKHAIREANKAVDVQNIQHISDDREFIGDEVERITENWNV 240

Query: 241 QRGVFYEQTGLDQQSVPVEADQQ 264
           QR VFY+QTGL+Q+    +  QQ
Sbjct: 241 QRQVFYQQTGLNQRHAQKDEQQQ 263

[Close]
BLAST of Csa2G008040 vs. TrEMBL
Match: V4TH10_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032301mg PE=4 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 3.4e-98
Identity = 182/286 (63.64%), Postives = 230/286 (80.42%), Query Frame = 1 

Query: 1   MDLSPFRLDIDELINEFAECGFTSFVDMKKVWIGRKFTYIFEAAPSTNLAFFMQSIFAQS 60
           MDLSPF+ DIDELI+EFA+    +  DMK+VW+ RKFTYI+EA+PSTNL+FFMQS++A +
Sbjct: 1   MDLSPFKQDIDELIDEFAQDELRTLADMKRVWLSRKFTYIYEASPSTNLSFFMQSLYAHT 60

Query: 61  ISHMLSTASLPHRLGGLYCLYCLYETQPFRPPYKIYLSIGELKKLKELVVDAKENNVKVV 120
             HM+S  SL  RLGGLYCLYCLYETQPF+PP+ IY+S+GELKKLKELVV+AK  +++VV
Sbjct: 61  TRHMVSNDSLSRRLGGLYCLYCLYETQPFKPPFHIYISLGELKKLKELVVEAKNKDIRVV 120

Query: 121 SFVVKRMLEKNMFLFGSVDMNESAALETVNQLTELQNARVQVAYKKLFNDTPIGNYIHMD 180
             +VKRMLEK  FLFG VD+NES+  ETVNQLT LQNARVQVAY+KLF  T I ++IHMD
Sbjct: 121 PALVKRMLEKKNFLFGFVDLNESSITETVNQLTGLQNARVQVAYEKLFASTRIEHFIHMD 180

Query: 181 LGMEVGSNILTKMSTDYSEAKKLALYEASKIVDVQDIKHIAEDEKLIGDTVEKIAEDWNV 240
           LGMEV  N+L KMST+Y+EAKK A+ EAS++VDVQ++KHI +D++L+GD VEKI E+WNV
Sbjct: 181 LGMEVDLNVLQKMSTEYAEAKKQAIQEASEVVDVQNVKHIVDDQELMGDVVEKITENWNV 240

Query: 241 QRGVFYEQTGLDQQSVPVEADQQLL-----EDHADVNFDKELERML 282
           QR +FY+QT +DQQ  P  A+Q+ L     E   D  F +ELE++L
Sbjct: 241 QRELFYQQTRMDQQ--PPAAEQRQLQVKDDEQGGDEEFGQELEQLL 284

[Close]
BLAST of Csa2G008040 vs. TrEMBL
Match: V4T0Z2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002076mg PE=4 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 2.4e-96
Identity = 176/284 (61.97%), Postives = 226/284 (79.58%), Query Frame = 1 

Query: 1   MDLSPFRLDIDELINEFAECGFTSFVDMKKVWIGRKFTYIFEAAPSTNLAFFMQSIFAQS 60
           MD SPF+ DIDELI+EFA+   T+  DMK+VW+ RKF YI+EA PSTNL+FFMQS++A +
Sbjct: 1   MDFSPFKQDIDELIDEFAQDELTTLADMKRVWLSRKFAYIYEACPSTNLSFFMQSLYAHT 60

Query: 61  ISHMLSTASLPHRLGGLYCLYCLYETQPFRPPYKIYLSIGELKKLKELVVDAKENNVKVV 120
           I HM+S  SL  RLGGLYCLYCLYETQPF+PP+ IY+S+GELKKLK+LVV+AK  +++VV
Sbjct: 61  ICHMVSNDSLSRRLGGLYCLYCLYETQPFKPPFHIYISLGELKKLKKLVVEAKNKDIRVV 120

Query: 121 SFVVKRMLEKNMFLFGSVDMNESAALETVNQLTELQNARVQVAYKKLFNDTPIGNYIHMD 180
             +VKRMLE  +FLFGSVD+NES+  ETV QLT+LQNARVQVAYKKLF  T I ++IHMD
Sbjct: 121 PALVKRMLENKIFLFGSVDLNESSIPETVKQLTDLQNARVQVAYKKLFASTRIEHFIHMD 180

Query: 181 LGMEVGSNILTKMSTDYSEAKKLALYEASKIVDVQDIKHIAEDEKLIGDTVEKIAEDWNV 240
           LG EV  N+L KMST+Y+EAK  A+ EAS++VDVQ++KHI +D++L+GD V KIAE+WNV
Sbjct: 181 LGAEVDLNVLKKMSTEYAEAKGQAIQEASEVVDVQNVKHIQDDQELMGDVVGKIAENWNV 240

Query: 241 QRGVFYEQTGLDQQSVPVEADQQLLEDH---ADVNFDKELERML 282
           Q+ +FY+QT +DQQ    E  Q  + D     D +F +ELE++L
Sbjct: 241 QKELFYQQTRMDQQPAAAEQTQLQVNDDEQGGDEDFGQELEQLL 284

[Close]
BLAST of Csa2G008040 vs. TAIR10
Match: AT3G53270.1 (AT3G53270.1 Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein)

HSP 1 Score: 299.3 bits (765), Expect = 2.5e-81
Identity = 150/288 (52.08%), Postives = 213/288 (73.96%), Query Frame = 1 

Query: 1   MDLSPFRLDIDELINEFAECGFTSFVDMKKVWIGRKFTYIFEAAPSTNLAFFMQSIFAQS 60
           M+LSPF+ DIDELI+EF E   T+F DMK VW+ RKF++I+EA+P++NLAFFMQS++  +
Sbjct: 1   MNLSPFKRDIDELIDEFVEDDLTTFADMKSVWLSRKFSHIYEASPNSNLAFFMQSLYVHT 60

Query: 61  ISHMLSTASLPHRLGGLYCLYCLYETQPFRPPYKIYLSIGELKKLKELVVDAKENNVKVV 120
           I HM+S  S   RLGGLYCLYCL+E QPF+P ++IY+S+ EL K ++LVV+AK+  V++ 
Sbjct: 61  IGHMVSIDSFSRRLGGLYCLYCLHEIQPFKPKFRIYISLQELGKFRDLVVEAKDKGVEIA 120

Query: 121 SFVVKRMLEKNMFLFGSVDMNESAALETVNQLTELQNARVQVAYKKLFNDTPIGNYIHMD 180
           + V K+ML++NM +FG+VD  E++A +T++QLTELQNARV+ AY+KL  DT I  +IH+D
Sbjct: 121 AAVAKKMLDENMLIFGAVD--ETSATKTIHQLTELQNARVRFAYEKLICDTSINQFIHLD 180

Query: 181 LGMEVGSNILTKMSTDYSEAKKLALYEASKIVDVQDIKHIAEDEKLIGDTVEKIAEDWNV 240
           +G EV  N L KMS +Y+EAKK A+  A +I+++ DIKHI+E+++L+G+ +EK+ E+W+ 
Sbjct: 181 MGKEVDLNSLDKMSIEYAEAKKRAVEGAGEIMEIDDIKHISEEKELMGERMEKLKEEWDS 240

Query: 241 QRGVFYEQTGLD------QQSVPVEADQQLLEDHADVNFDKELERMLT 283
           QR  FYEQT LD      +Q   VE D+       D  FD EL+R+L+
Sbjct: 241 QRLYFYEQTKLDGFTTTPKQLTNVEHDE-------DDGFD-ELDRLLS 278

[Close]
BLAST of Csa2G008040 vs. NCBI nr
Match: gi|778666211|ref|XP_011648706.1| (PREDICTED: uncharacterized protein LOC101216308 isoform X1 [Cucumis sativus])

HSP 1 Score: 564.7 bits (1454), Expect = 9.2e-158
Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 1 

Query: 1   MDLSPFRLDIDELINEFAECGFTSFVDMKKVWIGRKFTYIFEAAPSTNLAFFMQSIFAQS 60
           MDLSPFRLDIDELINEFAECGFTSFVDMKKVWIGRKFTYIFEAAPSTNLAFFMQSIFAQS
Sbjct: 1   MDLSPFRLDIDELINEFAECGFTSFVDMKKVWIGRKFTYIFEAAPSTNLAFFMQSIFAQS 60

Query: 61  ISHMLSTASLPHRLGGLYCLYCLYETQPFRPPYKIYLSIGELKKLKELVVDAKENNVKVV 120
           ISHMLSTASLPHRLGGLYCLYCLYETQPFRPPYKIYLSIGELKKLKELVVDAKENNVKVV
Sbjct: 61  ISHMLSTASLPHRLGGLYCLYCLYETQPFRPPYKIYLSIGELKKLKELVVDAKENNVKVV 120

Query: 121 SFVVKRMLEKNMFLFGSVDMNESAALETVNQLTELQNARVQVAYKKLFNDTPIGNYIHMD 180
           SFVVKRMLEKNMFLFGSVDMNESAALETVNQLTELQNARVQVAYKKLFNDTPIGNYIHMD
Sbjct: 121 SFVVKRMLEKNMFLFGSVDMNESAALETVNQLTELQNARVQVAYKKLFNDTPIGNYIHMD 180

Query: 181 LGMEVGSNILTKMSTDYSEAKKLALYEASKIVDVQDIKHIAEDEKLIGDTVEKIAEDWNV 240
           LGMEVGSNILTKMSTDYSEAKKLALYEASKIVDVQDIKHIAEDEKLIGDTVEKIAEDWNV
Sbjct: 181 LGMEVGSNILTKMSTDYSEAKKLALYEASKIVDVQDIKHIAEDEKLIGDTVEKIAEDWNV 240

Query: 241 QRGVFYEQTGLDQQSVPVEADQQLLEDHADVNFDKELERMLTDV 285
           QRGVFYEQTGLDQQSVPVEADQQLLEDHADVNFDKELERMLTDV
Sbjct: 241 QRGVFYEQTGLDQQSVPVEADQQLLEDHADVNFDKELERMLTDV 284

[Close]
BLAST of Csa2G008040 vs. NCBI nr
Match: gi|778666225|ref|XP_011648709.1| (PREDICTED: uncharacterized protein LOC101216308 isoform X2 [Cucumis sativus])

HSP 1 Score: 558.1 bits (1437), Expect = 8.6e-156
Identity = 283/284 (99.65%), Postives = 283/284 (99.65%), Query Frame = 1 

Query: 1   MDLSPFRLDIDELINEFAECGFTSFVDMKKVWIGRKFTYIFEAAPSTNLAFFMQSIFAQS 60
           MDLSPFRLDIDELINEFAECGFTSFVDMKKVWIGRKFTYIFEAAPSTNLAFFMQSIFAQS
Sbjct: 1   MDLSPFRLDIDELINEFAECGFTSFVDMKKVWIGRKFTYIFEAAPSTNLAFFMQSIFAQS 60

Query: 61  ISHMLSTASLPHRLGGLYCLYCLYETQPFRPPYKIYLSIGELKKLKELVVDAKENNVKVV 120
           ISHMLSTASLPHRLGGLYCLYCLYETQPFRPPYKIYLSIGELKKLKELVVDAKENNVKVV
Sbjct: 61  ISHMLSTASLPHRLGGLYCLYCLYETQPFRPPYKIYLSIGELKKLKELVVDAKENNVKVV 120

Query: 121 SFVVKRMLEKNMFLFGSVDMNESAALETVNQLTELQNARVQVAYKKLFNDTPIGNYIHMD 180
           SFVVKRMLEKNMFLFGSVDMNESAALETVNQLTELQNARVQVAYKKLFNDTPIGNYIHMD
Sbjct: 121 SFVVKRMLEKNMFLFGSVDMNESAALETVNQLTELQNARVQVAYKKLFNDTPIGNYIHMD 180

Query: 181 LGMEVGSNILTKMSTDYSEAKKLALYEASKIVDVQDIKHIAEDEKLIGDTVEKIAEDWNV 240
           LGMEVGSNILTKMSTDYSEAKKLALY ASKIVDVQDIKHIAEDEKLIGDTVEKIAEDWNV
Sbjct: 181 LGMEVGSNILTKMSTDYSEAKKLALY-ASKIVDVQDIKHIAEDEKLIGDTVEKIAEDWNV 240

Query: 241 QRGVFYEQTGLDQQSVPVEADQQLLEDHADVNFDKELERMLTDV 285
           QRGVFYEQTGLDQQSVPVEADQQLLEDHADVNFDKELERMLTDV
Sbjct: 241 QRGVFYEQTGLDQQSVPVEADQQLLEDHADVNFDKELERMLTDV 283

[Close]
BLAST of Csa2G008040 vs. NCBI nr
Match: gi|659070894|ref|XP_008457139.1| (PREDICTED: uncharacterized protein LOC103496883 isoform X1 [Cucumis melo])

HSP 1 Score: 545.4 bits (1404), Expect = 5.8e-152
Identity = 273/284 (96.13%), Postives = 277/284 (97.54%), Query Frame = 1 

Query: 1   MDLSPFRLDIDELINEFAECGFTSFVDMKKVWIGRKFTYIFEAAPSTNLAFFMQSIFAQS 60
           MDLSPFRLDIDELINEFAECGFTSF DMKKVWIGRKFTYIFEAAPSTNLAFFMQSIFAQS
Sbjct: 1   MDLSPFRLDIDELINEFAECGFTSFGDMKKVWIGRKFTYIFEAAPSTNLAFFMQSIFAQS 60

Query: 61  ISHMLSTASLPHRLGGLYCLYCLYETQPFRPPYKIYLSIGELKKLKELVVDAKENNVKVV 120
           ISHM S ASLPHRLGGLYCLYCLYETQPFRPPYKIYLSIGELKKLKELV+DAKENNVKVV
Sbjct: 61  ISHMRSAASLPHRLGGLYCLYCLYETQPFRPPYKIYLSIGELKKLKELVIDAKENNVKVV 120

Query: 121 SFVVKRMLEKNMFLFGSVDMNESAALETVNQLTELQNARVQVAYKKLFNDTPIGNYIHMD 180
           SFVVKRMLEKNMFLFGSVDMNESAALETVNQLTELQNARVQVAY KLFNDTPI NYIHMD
Sbjct: 121 SFVVKRMLEKNMFLFGSVDMNESAALETVNQLTELQNARVQVAYNKLFNDTPIENYIHMD 180

Query: 181 LGMEVGSNILTKMSTDYSEAKKLALYEASKIVDVQDIKHIAEDEKLIGDTVEKIAEDWNV 240
           LGMEVGSN+LTKMSTDYSEAKKLALYEASKIVDVQDIKHIAEDEKLIGDTVEKIAEDWNV
Sbjct: 181 LGMEVGSNLLTKMSTDYSEAKKLALYEASKIVDVQDIKHIAEDEKLIGDTVEKIAEDWNV 240

Query: 241 QRGVFYEQTGLDQQSVPVEADQQLLEDHADVNFDKELERMLTDV 285
           QRGVFYEQTGLDQQ +PVEADQQLLEDH DV+FDKELERMLTDV
Sbjct: 241 QRGVFYEQTGLDQQLIPVEADQQLLEDHTDVDFDKELERMLTDV 284

[Close]
BLAST of Csa2G008040 vs. NCBI nr
Match: gi|659070898|ref|XP_008457155.1| (PREDICTED: uncharacterized protein LOC103496883 isoform X2 [Cucumis melo])

HSP 1 Score: 538.9 bits (1387), Expect = 5.4e-150
Identity = 272/284 (95.77%), Postives = 276/284 (97.18%), Query Frame = 1 

Query: 1   MDLSPFRLDIDELINEFAECGFTSFVDMKKVWIGRKFTYIFEAAPSTNLAFFMQSIFAQS 60
           MDLSPFRLDIDELINEFAECGFTSF DMKKVWIGRKFTYIFEAAPSTNLAFFMQSIFAQS
Sbjct: 1   MDLSPFRLDIDELINEFAECGFTSFGDMKKVWIGRKFTYIFEAAPSTNLAFFMQSIFAQS 60

Query: 61  ISHMLSTASLPHRLGGLYCLYCLYETQPFRPPYKIYLSIGELKKLKELVVDAKENNVKVV 120
           ISHM S ASLPHRLGGLYCLYCLYETQPFRPPYKIYLSIGELKKLKELV+DAKENNVKVV
Sbjct: 61  ISHMRSAASLPHRLGGLYCLYCLYETQPFRPPYKIYLSIGELKKLKELVIDAKENNVKVV 120

Query: 121 SFVVKRMLEKNMFLFGSVDMNESAALETVNQLTELQNARVQVAYKKLFNDTPIGNYIHMD 180
           SFVVKRMLEKNMFLFGSVDMNESAALETVNQLTELQNARVQVAY KLFNDTPI NYIHMD
Sbjct: 121 SFVVKRMLEKNMFLFGSVDMNESAALETVNQLTELQNARVQVAYNKLFNDTPIENYIHMD 180

Query: 181 LGMEVGSNILTKMSTDYSEAKKLALYEASKIVDVQDIKHIAEDEKLIGDTVEKIAEDWNV 240
           LGMEVGSN+LTKMSTDYSEAKKLALY ASKIVDVQDIKHIAEDEKLIGDTVEKIAEDWNV
Sbjct: 181 LGMEVGSNLLTKMSTDYSEAKKLALY-ASKIVDVQDIKHIAEDEKLIGDTVEKIAEDWNV 240

Query: 241 QRGVFYEQTGLDQQSVPVEADQQLLEDHADVNFDKELERMLTDV 285
           QRGVFYEQTGLDQQ +PVEADQQLLEDH DV+FDKELERMLTDV
Sbjct: 241 QRGVFYEQTGLDQQLIPVEADQQLLEDHTDVDFDKELERMLTDV 283

[Close]
BLAST of Csa2G008040 vs. NCBI nr
Match: gi|645225517|ref|XP_008219615.1| (PREDICTED: uncharacterized protein LOC103319800 [Prunus mume])

HSP 1 Score: 375.9 bits (964), Expect = 6.1e-101
Identity = 184/290 (63.45%), Postives = 240/290 (82.76%), Query Frame = 1 

Query: 1   MDLSPFRLDIDELINEFAECGFTSFVDMKKVWIGRKFTYIFEAAPSTNLAFFMQSIFAQS 60
           MDL+PF+ DIDELI+ FAE   TS  DMK++W+ +KF+YI+EA PSTNLAFFMQS++A S
Sbjct: 1   MDLTPFKRDIDELIDAFAEGESTSLADMKRIWLSKKFSYIYEARPSTNLAFFMQSLYAHS 60

Query: 61  ISHMLSTASLPHRLGGLYCLYCLYETQPFRPPYKIYLSIGELKKLKELVVDAKENNVKVV 120
           I +++ TA+L HRLGGLYCL+CLYETQPF+PP+KIYLS+ ELKKL++LV+DAKE++++VV
Sbjct: 61  IGYIIGTATLSHRLGGLYCLFCLYETQPFKPPFKIYLSLEELKKLRKLVIDAKEHDLRVV 120

Query: 121 SFVVKRMLEKNMFLFGSVDMNESAALETVNQLTELQNARVQVAYKKLFNDTPIGNYIHMD 180
           S +VKRMLEKN+FLFGSVD NE +  ETV+QLT+LQNARVQVAYK+LF +T I +++HMD
Sbjct: 121 SALVKRMLEKNVFLFGSVDTNEGSFTETVDQLTQLQNARVQVAYKELFANTKIEDFLHMD 180

Query: 181 LGMEVGSNILTKMSTDYSEAKKLALYEASKIVDVQDIKHIAEDEKLIGDTVEKIAEDWNV 240
           LGMEV  N+L KMSTDY+EAKK+A+ EASK+VDVQDIKHI+ED++L+GD VEK+   W+ 
Sbjct: 181 LGMEVDLNMLKKMSTDYAEAKKIAINEASKVVDVQDIKHISEDKELVGDAVEKMVGQWDA 240

Query: 241 QRGVFYEQTGL-------DQQSVPVEADQQLLEDHADVNFDKELERMLTD 284
           QR VFY+QTG        +QQ  P +   QLL D  + NFD+ELE++L++
Sbjct: 241 QREVFYQQTGANQKLPEGEQQLEPQQLQLQLLSD--EENFDQELEQLLSE 288

The following BLAST results are available for this feature:
BLAST of Csa2G008040 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LL25_CUCSA6.4e-158100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G008040 PE=4 SV=1[more]
M5XGB0_PRUPE3.6e-10062.76Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009480mg PE=4 SV=1[more]
U5G664_POPTR1.4e-9967.68Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s06470g PE=4 SV=1[more]
V4TH10_9ROSI3.4e-9863.64Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032301mg PE=4 SV=1[more]
V4T0Z2_9ROSI2.4e-9661.97Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002076mg PE=4 SV=1[more]
BLAST of Csa2G008040 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G53270.12.5e-8152.08 Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein[more]
BLAST of Csa2G008040 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778666211|ref|XP_011648706.1|9.2e-158100.00PREDICTED: uncharacterized protein LOC101216308 isoform X1 [Cucumis sativus][more]
gi|778666225|ref|XP_011648709.1|8.6e-15699.65PREDICTED: uncharacterized protein LOC101216308 isoform X2 [Cucumis sativus][more]
gi|659070894|ref|XP_008457139.1|5.8e-15296.13PREDICTED: uncharacterized protein LOC103496883 isoform X1 [Cucumis melo][more]
gi|659070898|ref|XP_008457155.1|5.4e-15095.77PREDICTED: uncharacterized protein LOC103496883 isoform X2 [Cucumis melo][more]
gi|645225517|ref|XP_008219615.1|6.1e-10163.45PREDICTED: uncharacterized protein LOC103319800 [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019188SNAPc_SNAP43
IPR019188SNAPc_SNAP43
IPR019188SNAPc_SNAP43
IPR019188SNAPc_SNAP43
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0042796 snRNA transcription from RNA polymerase III promoter
biological_process GO:0042795 snRNA transcription from RNA polymerase II promoter
cellular_component GO:0005575 cellular_component
cellular_component GO:0019185 snRNA-activating protein complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0043565 sequence-specific DNA binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU172246cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G008040.1Csa2G008040.1mRNA
Csa2G008040.2Csa2G008040.2mRNA
Csa2G008040.3Csa2G008040.3mRNA
Csa2G008040.4Csa2G008040.4mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU172246CU172246transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019188Small nuclear RNA activating complex (SNAPc), subunit SNAP43PANTHERPTHR15131SMALL NUCLEAR RNA ACTIVATING COMPLEX, POLYPEPTIDE 1coord: 1..261
score: 7.9
IPR019188Small nuclear RNA activating complex (SNAPc), subunit SNAP43PFAMPF09808SNAPc_SNAP43coord: 6..201
score: 1.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa2G008040Cla016681Watermelon (97103) v1cuwmB162
Csa2G008040MELO3C004466Melon (DHL92) v3.5.1cumeB136
Csa2G008040ClCG11G003340Watermelon (Charleston Gray)cuwcgB096
Csa2G008040Lsi11G003470Bottle gourd (USVL1VR-Ls)culsiB098
Csa2G008040MELO3C004466.2Melon (DHL92) v3.6.1cumedB128
Csa2G008040Cla97C11G209830Watermelon (97103) v2cuwmbB103
Csa2G008040Bhi06G001610Wax gourdcuwgoB138
Csa2G008040CSPI02G02010Wild cucumber (PI 183967)cpicuB065
Csa2G008040Cucsa.132410Cucumber (Gy14) v1cgycuB184
Csa2G008040Cp4.1LG07g11290Cucurbita pepo (Zucchini)cpecuB812
Csa2G008040CsGy2G002100Cucumber (Gy14) v2cgybcuB056
Csa2G008040Carg17486Silver-seed gourdcarcuB0282
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G008040Watermelon (97103) v2cuwmbB137
Csa2G008040Watermelon (97103) v2cuwmbB157
Csa2G008040Wax gourdcuwgoB204
Csa2G008040Cucumber (Chinese Long) v2cucuB058
Csa2G008040Cucumber (Gy14) v1cgycuB448
Csa2G008040Cucurbita maxima (Rimu)cmacuB173
Csa2G008040Cucurbita maxima (Rimu)cmacuB791
Csa2G008040Cucurbita moschata (Rifu)cmocuB157
Csa2G008040Cucurbita moschata (Rifu)cmocuB428
Csa2G008040Cucurbita moschata (Rifu)cmocuB783
Csa2G008040Melon (DHL92) v3.5.1cumeB126
Csa2G008040Watermelon (Charleston Gray)cuwcgB142
Csa2G008040Watermelon (Charleston Gray)cuwcgB164
Csa2G008040Watermelon (97103) v1cuwmB128
Csa2G008040Cucurbita pepo (Zucchini)cpecuB103
Csa2G008040Cucurbita pepo (Zucchini)cpecuB544
Csa2G008040Bottle gourd (USVL1VR-Ls)culsiB138
Csa2G008040Bottle gourd (USVL1VR-Ls)culsiB124
Csa2G008040Cucumber (Gy14) v2cgybcuB106
Csa2G008040Melon (DHL92) v3.6.1cumedB121
Csa2G008040Melon (DHL92) v3.6.1cumedB132
Csa2G008040Silver-seed gourdcarcuB0598