Cp4.1LG07g11290 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG07g11290
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionSmall nuclear RNA activating complex (SNAPc), subunit SNAP43 protein
LocationCp4.1LG07 : 9842560 .. 9846117 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GATATATAACAAAAACGGAGTGCAAATGGCGCGGAGAACTTTGCTTTCCGAATCTCACCCACCGGCCTCCACCGCTTCTCTCTCTGGAAACCACTCTCTGTTTCTCTTCAGGCATCAGGCGGTGACGGACAGTTCACAGTAGACCTGCGATTGTCTCGCCGCCTTTTCGTTCGGTATTGTATCACTTCTTTTACCTTTCTTTTAATTTCAATGTCTTTGTCTTGTGGTATATTTATTGTTGGGAAAATAGCTGAATGTTCCAGTAATTTGTTTTTGTATTTTGAAATGGGAGAATCCGACGCTGTTCATTGCCCATCGAACGTTCTGCCATTGCATTTTTCATCTGTATTTGCAAATAAGCAAAAGGGTTTAGAGGGAAAAGTTTTGAACTATGGATACCCATCTGACGAAGATTTGAAAATTATTGAAAATCAAAAGTTGTGAAATTAGTGAAATCAGAAGAGTTCGATACTTATTTGTGAAATTAGTTTATGTGTGCTCGGAGCTGACCTGAACAATCACCGATGGTGTAATTTGCAAACTAGTCATTGTTGAGGATGGTTGGGAGGGAATCCACATCGGCTAATTAGGGGGATAATCATGGGTTTATAATTATGAGTAAGGAAAACATCTCTTCTATTGGTATGAGGCCTTTTAGAGAAACCAAGAGCAAAACCATGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGGTTCGTGGTTCTTAACATGGTATTAGAGCCATGCCTTTAACTTAGTCATGTCAATAAAATCTTCAAATGTTGAACAAAGAAGTTGTAAGCCTCGAATGTGTAGTAAAAAAATGACTCAAGAGTCGAACAAATGGTGTATTTTGTTTGAGGGCTTTAGAGAAAGGAGTCAAGCTTTGATTAAGCGGAGGCTGTTTGAGGGCTCCATGGGCTTCAGGGGAGACTCTATGATGTACTTTGTTCAAGGGGACGATTGTTGAGAGTTGTTGGGAGGGAGTCTTGGCTAATTAAGGGGATGATCATGGGTTTATAAGTAAGGAATACATCTCCATTAGTATGAGGCCTTTTAAGGAAACCAAAAGCAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTAGAGGTTCGTGGTTCCTAACTGTCATCCCACTTATATCTGGCTTATCCCCATGACACTTATACTTTGTTCACATGGTAGAAAGGATTGTTTCGTGTCAATGTTAATGTTATTTGAAAAATTCTGTTCTTATTTATTATTTTTCCTGAGAACTCATTCCTTGAAATGTGAAGAAAGTCGGAATTTATATTTTTCTGATGACATAGTTTGCCTATGGAAGGATTTTCCATTGCTGTACCCATTTTTTTTCTACTATGCATTCATGTAATGCTTTTTTCTCACTCAGATAATTGTGGATGCAATGGATCTTTCTCCATTCAGGCTTGATATCGATGAGCTGATCAATGAATATGCTGAGGTAGCTCTTAAGTACTTTGAAGTTATGTAGATTTCCTGTTTGTGCTAACTTGCATATTGAAAAGATGTTAGTTTTTTAAATGTATAACCCCTGAGAAGTTTGGTTTACAGGGCGGGTTTACATCTTTTGCGGATATGAAGAAAGTATGGATTGGAAGGAAATTCACTTACATATTTGAGGCTGCTCCTTTGAACTTGGCGTTCTTTATGCAATCAATGTATGCCCAAACAATCGGTAGGCTCTGGCGTAATAAGTTCGGTCATCTATACATTAATTTGTTGGCCATTGACGATTTCTTCTAAATTATGATGAACAAAGCTCTTTACTTCAAAGATTATGGTACTAATACTTCGTTTTGCAGGTCACATGGTCAGTACCGCTTCTTTATCACACAGACTAGGTGGCCTTTATTGCCTTTACAGCCTTTATGAGACACAACCCTTTAAACCCTCTTACAAAATCTACCTGTCTATTGGTATGATTTCTCAAAGTTCTTTGATAATTATCTATAGATATATGTAAGTTTTTCCTAGCTCTTTGTTTGGGTGGACGTCTCTTGATTTCATGTTTACCTTTTCTTCTTTGGTTATTTTACGACGCTTCCACGTTTATAGGAGAGTTAAAGAAACTGAAGGAACTTATTGTCGAGGCAAAAGAAAAGAACGTAAAAGTGGCGTCTGCTGTGGTGAAAAGAATGTTAGAAAAGAACATGTTCCTCTTTGGATCTGTAGACATGAATGAGAGCTCTGCCTTGGAAACAGTGAATCAACTAACAGAATTACAAAATGCCCGCATTCAAGTTGCCTATGATAAGTACGTTCGAGACACAGACGATTATCCTTTTTGTTCTAGATTTATACTGTTCATGCCATGATATCTTTACAGCAACCTTGATTTTTACTTTTGGATGTCTAGGCTGTTTGCTGATACCCCAATAGAAGATCATATCCATATGAACTTGGTAAGTGAAAAATACCAAAACTTACCCGATTCGCCTTGTTTCTGATCCATTATACTCCAATACCTGTTTAACTAGCATTATGAACTCTTCCATGTTATTATCAACTATTTATCAGGGGATGGAAGCTGGTTTGAATATATTGAAAAAGATGTCATCAGATTATTCAGAGGCAAAGAAAGTTGCATTATATGGTAACTTCTTTCATCCCAATCATATTTGATCTCTCTATTCTCTCATGATTTTTGTTTCTTACTAAACTTTATGCCCATGTTTCTCTATGTTCGTCTTGGTACCAAAAGAAGCGAGCGAGATCGTGGATGTCCAGGACATAAAGCACATATCAGAGGATGAGGGATTGATTGGAGATACAGTTGAAAAGATTGCGGAGGACTGGAACGTTCAACGAGGAGCCTTTTACGAACAAGTTGGACATGACCAACAGCTTGCTCTAGTCGAGGCACACGAAGAGCAAGAACATCACGCCGATGAAAATTTTGATATGGAACTTGAAAGAATGCTCACTGATGTTCAACAAGGTACAGAGTCCTCTCTAATTCTAACTCTGAAAGATGGGGGTTCTTGAATTGCCATATCATTCCATTGCCTGATCTTCTATAAACAGCTTTATGACGTTTAACTAGCTGAAAGAGAGATCCTTAAACCTGATTCATACCCAAAATCCAACCCCATGTAGTGTAAATAGCAACGTTCTAAACCCTTTATGTTCAATATGATCAATAGCTTTCCTTAGAAAATGTTGTCACTTGCTCGGGCAAGCTTTCCTTATTGATGGCTCCTATAACATCTTCGGGACGAGGGTTGAAAAGGTCTCATGTTTATTATTAGAGATGTTCATTCTACTTGTGGAAACCTACCTCGAACAAGGTAGGAAATCTCTGTTTAAGTAGAAAATGTGGAGAATGAGATGAAAGGTTTCTCTCGACAATTAGAGTTGAAAATGTTTCATGTTTATTATTAGAGATGTTCATTTTACCTATGGATACCTGCCTCGAATGAGGTAGGAAATCACTGGTTAAATGCAAAATGTGAAAGGATGTGATGCTAGATAAGTAGGACGGAGATTATATTTCTTGACCTTGCTTCGACCTCAT

mRNA sequence

GATATATAACAAAAACGGAGTGCAAATGGCGCGGAGAACTTTGCTTTCCGAATCTCACCCACCGGCCTCCACCGCTTCTCTCTCTGGAAACCACTCTCTGTTTCTCTTCAGGCATCAGGCGGTGACGGACAGTTCACAGTAGACCTGCGATTGTCTCGCCGCCTTTTCGTTCGATAATTGTGGATGCAATGGATCTTTCTCCATTCAGGCTTGATATCGATGAGCTGATCAATGAATATGCTGAGGGCGGGTTTACATCTTTTGCGGATATGAAGAAAGTATGGATTGGAAGGAAATTCACTTACATATTTGAGGCTGCTCCTTTGAACTTGGCGTTCTTTATGCAATCAATGTATGCCCAAACAATCGGTCACATGGTCAGTACCGCTTCTTTATCACACAGACTAGGTGGCCTTTATTGCCTTTACAGCCTTTATGAGACACAACCCTTTAAACCCTCTTACAAAATCTACCTGTCTATTGGAGAGTTAAAGAAACTGAAGGAACTTATTGTCGAGGCAAAAGAAAAGAACGTAAAAGTGGCGTCTGCTGTGGTGAAAAGAATGTTAGAAAAGAACATGTTCCTCTTTGGATCTGTAGACATGAATGAGAGCTCTGCCTTGGAAACAGTGAATCAACTAACAGAATTACAAAATGCCCGCATTCAAGTTGCCTATGATAACAACCTTGATTTTTACTTTTGGATGTCTAGGCTGTTTGCTGATACCCCAATAGAAGATCATATCCATATGAACTTGGGGATGGAAGCTGGTTTGAATATATTGAAAAAGATGTCATCAGATTATTCAGAGGCAAAGAAAGTTGCATTATATGAAGCGAGCGAGATCGTGGATGTCCAGGACATAAAGCACATATCAGAGGATGAGGGATTGATTGGAGATACAGTTGAAAAGATTGCGGAGGACTGGAACGTTCAACGAGGAGCCTTTTACGAACAAGTTGGACATGACCAACAGCTTGCTCTAGTCGAGGCACACGAAGAGCAAGAACATCACGCCGATGAAAATTTTGATATGGAACTTGAAAGAATGCTCACTGATGTTCAACAAGGTACAGAGTCCTCTCTAATTCTAACTCTGAAAGATGGGGGTTCTTGAATTGCCATATCATTCCATTGCCTGATCTTCTATAAACAGCTTTATGACGTTTAACTAGCTGAAAGAGAGATCCTTAAACCTGATTCATACCCAAAATCCAACCCCATGTAGTGTAAATAGCAACGTTCTAAACCCTTTATGTTCAATATGATCAATAGCTTTCCTTAGAAAATGTTGTCACTTGCTCGGGCAAGCTTTCCTTATTGATGGCTCCTATAACATCTTCGGGACGAGGGTTGAAAAGGTCTCATGTTTATTATTAGAGATGTTCATTCTACTTGTGGAAACCTACCTCGAACAAGGTAGGAAATCTCTGTTTAAGTAGAAAATGTGGAGAATGAGATGAAAGGTTTCTCTCGACAATTAGAGTTGAAAATGTTTCATGTTTATTATTAGAGATGTTCATTTTACCTATGGATACCTGCCTCGAATGAGGTAGGAAATCACTGGTTAAATGCAAAATGTGAAAGGATGTGATGCTAGATAAGTAGGACGGAGATTATATTTCTTGACCTTGCTTCGACCTCAT

Coding sequence (CDS)

ATGGATCTTTCTCCATTCAGGCTTGATATCGATGAGCTGATCAATGAATATGCTGAGGGCGGGTTTACATCTTTTGCGGATATGAAGAAAGTATGGATTGGAAGGAAATTCACTTACATATTTGAGGCTGCTCCTTTGAACTTGGCGTTCTTTATGCAATCAATGTATGCCCAAACAATCGGTCACATGGTCAGTACCGCTTCTTTATCACACAGACTAGGTGGCCTTTATTGCCTTTACAGCCTTTATGAGACACAACCCTTTAAACCCTCTTACAAAATCTACCTGTCTATTGGAGAGTTAAAGAAACTGAAGGAACTTATTGTCGAGGCAAAAGAAAAGAACGTAAAAGTGGCGTCTGCTGTGGTGAAAAGAATGTTAGAAAAGAACATGTTCCTCTTTGGATCTGTAGACATGAATGAGAGCTCTGCCTTGGAAACAGTGAATCAACTAACAGAATTACAAAATGCCCGCATTCAAGTTGCCTATGATAACAACCTTGATTTTTACTTTTGGATGTCTAGGCTGTTTGCTGATACCCCAATAGAAGATCATATCCATATGAACTTGGGGATGGAAGCTGGTTTGAATATATTGAAAAAGATGTCATCAGATTATTCAGAGGCAAAGAAAGTTGCATTATATGAAGCGAGCGAGATCGTGGATGTCCAGGACATAAAGCACATATCAGAGGATGAGGGATTGATTGGAGATACAGTTGAAAAGATTGCGGAGGACTGGAACGTTCAACGAGGAGCCTTTTACGAACAAGTTGGACATGACCAACAGCTTGCTCTAGTCGAGGCACACGAAGAGCAAGAACATCACGCCGATGAAAATTTTGATATGGAACTTGAAAGAATGCTCACTGATGTTCAACAAGGTACAGAGTCCTCTCTAATTCTAACTCTGAAAGATGGGGGTTCTTGA

Protein sequence

MDLSPFRLDIDELINEYAEGGFTSFADMKKVWIGRKFTYIFEAAPLNLAFFMQSMYAQTIGHMVSTASLSHRLGGLYCLYSLYETQPFKPSYKIYLSIGELKKLKELIVEAKEKNVKVASAVVKRMLEKNMFLFGSVDMNESSALETVNQLTELQNARIQVAYDNNLDFYFWMSRLFADTPIEDHIHMNLGMEAGLNILKKMSSDYSEAKKVALYEASEIVDVQDIKHISEDEGLIGDTVEKIAEDWNVQRGAFYEQVGHDQQLALVEAHEEQEHHADENFDMELERMLTDVQQGTESSLILTLKDGGS
Homology
[Close]
BLAST of Cp4.1LG07g11290 vs. TrEMBL
Match: A0A0A0LL25_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G008040 PE=4 SV=1)

HSP 1 Score: 441.4 bits (1134), Expect = 8.9e-121
Identity = 234/294 (79.59%), Postives = 254/294 (86.39%), Query Frame = 1 

Query: 1   MDLSPFRLDIDELINEYAEGGFTSFADMKKVWIGRKFTYIFEAAP-LNLAFFMQSMYAQT 60
           MDLSPFRLDIDELINE+AE GFTSF DMKKVWIGRKFTYIFEAAP  NLAFFMQS++AQ+
Sbjct: 1   MDLSPFRLDIDELINEFAECGFTSFVDMKKVWIGRKFTYIFEAAPSTNLAFFMQSIFAQS 60

Query: 61  IGHMVSTASLSHRLGGLYCLYSLYETQPFKPSYKIYLSIGELKKLKELIVEAKEKNVKVA 120
           I HM+STASL HRLGGLYCLY LYETQPF+P YKIYLSIGELKKLKEL+V+AKE NVKV 
Sbjct: 61  ISHMLSTASLPHRLGGLYCLYCLYETQPFRPPYKIYLSIGELKKLKELVVDAKENNVKVV 120

Query: 121 SAVVKRMLEKNMFLFGSVDMNESSALETVNQLTELQNARIQVAYDNNLDFYFWMSRLFAD 180
           S VVKRMLEKNMFLFGSVDMNES+ALETVNQLTELQNAR+QVAY           +LF D
Sbjct: 121 SFVVKRMLEKNMFLFGSVDMNESAALETVNQLTELQNARVQVAY----------KKLFND 180

Query: 181 TPIEDHIHMNLGMEAGLNILKKMSSDYSEAKKVALYEASEIVDVQDIKHISEDEGLIGDT 240
           TPI ++IHM+LGME G NIL KMS+DYSEAKK+ALYEAS+IVDVQDIKHI+EDE LIGDT
Sbjct: 181 TPIGNYIHMDLGMEVGSNILTKMSTDYSEAKKLALYEASKIVDVQDIKHIAEDEKLIGDT 240

Query: 241 VEKIAEDWNVQRGAFYEQVGHDQQLALVEAHEE-QEHHADENFDMELERMLTDV 293
           VEKIAEDWNVQRG FYEQ G DQQ   VEA ++  E HAD NFD ELERMLTDV
Sbjct: 241 VEKIAEDWNVQRGVFYEQTGLDQQSVPVEADQQLLEDHADVNFDKELERMLTDV 284

[Close]
BLAST of Cp4.1LG07g11290 vs. TrEMBL
Match: M5XGB0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009480mg PE=4 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 1.6e-93
Identity = 180/300 (60.00%), Postives = 233/300 (77.67%), Query Frame = 1 

Query: 1   MDLSPFRLDIDELINEYAEGGFTSFADMKKVWIGRKFTYIFEAAP-LNLAFFMQSMYAQT 60
           MDL+PF+ DIDELI+ +AEG  TS ADMK++W+ +KF+YI+EA P  NLAFFMQS+YA +
Sbjct: 1   MDLTPFKRDIDELIDAFAEGESTSLADMKRIWLSKKFSYIYEARPSTNLAFFMQSLYAHS 60

Query: 61  IGHMVSTASLSHRLGGLYCLYSLYETQPFKPSYKIYLSIGELKKLKELIVEAKEKNVKVA 120
           IG+++ TA+LSHRLGGLYCL+ LYETQPFKP +KIYLS+ ELKKL++L++ AKE +++V 
Sbjct: 61  IGYIIGTATLSHRLGGLYCLFCLYETQPFKPPFKIYLSLEELKKLRKLVINAKEHDIRVV 120

Query: 121 SAVVKRMLEKNMFLFGSVDMNESSALETVNQLTELQNARIQVAYDNNLDFYFWMSRLFAD 180
           SA+VKRMLEKN+FLFGSVD NE S  ETV+QLT+LQNAR+QVAY            LFA+
Sbjct: 121 SALVKRMLEKNVFLFGSVDTNEGSFTETVDQLTQLQNARVQVAY----------KELFAN 180

Query: 181 TPIEDHIHMNLGMEAGLNILKKMSSDYSEAKKVALYEASEIVDVQDIKHISEDEGLIGDT 240
           T IED +HM+LGME  LN+LKKMS+DY+EAKK+A+ EAS++VDVQDIKHISED+ L+GD 
Sbjct: 181 TKIEDFLHMDLGMEVDLNMLKKMSTDYAEAKKIAINEASKVVDVQDIKHISEDKELVGDA 240

Query: 241 VEKIAEDWNVQRGAFYEQVGHDQQLALVEAHEEQEH--------HADENFDMELERMLTD 292
           VEK+   W+ QR  FY+Q G +Q+L   E   E +           DENFD ELE++L++
Sbjct: 241 VEKMVGQWDAQREVFYQQTGANQKLPEGEQQLEPQQLQLQLQLLSDDENFDQELEQLLSE 290

[Close]
BLAST of Cp4.1LG07g11290 vs. TrEMBL
Match: U5G664_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s06470g PE=4 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 6.0e-93
Identity = 183/304 (60.20%), Postives = 226/304 (74.34%), Query Frame = 1 

Query: 1   MDLSPFRLDIDELINEYAEGGFTSFADMKKVWIGRKFTYIFEAAP-LNLAFFMQSMYAQT 60
           MDLSPF+LDIDELINE+ EG FT+ ADMK+VW+ RKFTYIFEA+P   LAFFMQS+YA T
Sbjct: 1   MDLSPFKLDIDELINEFVEGEFTTLADMKRVWLSRKFTYIFEASPPTKLAFFMQSLYAHT 60

Query: 61  IGHMVSTASLSHRLGGLYCLYSLYETQPFKPSYKIYLSIGELKKLKELIVEAKEKNVKVA 120
           IGHM+ST+SLS RLGGLYCLY LYETQPFKP +KIY S+GELKKLK L++ AKE  +KV 
Sbjct: 61  IGHMISTSSLSQRLGGLYCLYCLYETQPFKPPFKIYFSLGELKKLKNLVINAKEHGIKVV 120

Query: 121 SAVVKRMLEKNMFLFGSVDMNESSALETVNQLTELQNARIQVAYDNNLDFYFWMSRLFAD 180
            A+VKRMLEKNMFLFG VD++E S  ETVNQLTELQ+AR+QVAY           +LF D
Sbjct: 121 PALVKRMLEKNMFLFGFVDLHEGSVSETVNQLTELQDARVQVAY----------KKLFDD 180

Query: 181 TPIEDHIHMNLGMEAGLNILKKMSSDYSEAKKVALYEASEIVDVQDIKHISEDEGLIGDT 240
           T IE  +HM++GME  L +LKKMS++Y+EAKK A+ EA++ VDVQ+I+HIS+D   IGD 
Sbjct: 181 TRIEQFLHMDMGMEFDLEMLKKMSTEYAEAKKHAIREANKAVDVQNIQHISDDREFIGDE 240

Query: 241 VEKIAEDWNVQRGAFYEQVG---------HDQQLALVEAHEEQEHHADENFDMELERMLT 295
           VE+I E+WNVQR  FY+Q G           QQ    + HE+Q+    + F  +LE  L 
Sbjct: 241 VERITENWNVQRQVFYQQTGLNQRHAQKDEQQQQPQHKKHEQQDDDFGDEFSHQLELQLI 294

[Close]
BLAST of Cp4.1LG07g11290 vs. TrEMBL
Match: V4TH10_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032301mg PE=4 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 1.1e-91
Identity = 181/294 (61.56%), Postives = 223/294 (75.85%), Query Frame = 1 

Query: 1   MDLSPFRLDIDELINEYAEGGFTSFADMKKVWIGRKFTYIFEAAP-LNLAFFMQSMYAQT 60
           MDLSPF+ DIDELI+E+A+    + ADMK+VW+ RKFTYI+EA+P  NL+FFMQS+YA T
Sbjct: 1   MDLSPFKQDIDELIDEFAQDELRTLADMKRVWLSRKFTYIYEASPSTNLSFFMQSLYAHT 60

Query: 61  IGHMVSTASLSHRLGGLYCLYSLYETQPFKPSYKIYLSIGELKKLKELIVEAKEKNVKVA 120
             HMVS  SLS RLGGLYCLY LYETQPFKP + IY+S+GELKKLKEL+VEAK K+++V 
Sbjct: 61  TRHMVSNDSLSRRLGGLYCLYCLYETQPFKPPFHIYISLGELKKLKELVVEAKNKDIRVV 120

Query: 121 SAVVKRMLEKNMFLFGSVDMNESSALETVNQLTELQNARIQVAYDNNLDFYFWMSRLFAD 180
            A+VKRMLEK  FLFG VD+NESS  ETVNQLT LQNAR+QVAY+          +LFA 
Sbjct: 121 PALVKRMLEKKNFLFGFVDLNESSITETVNQLTGLQNARVQVAYE----------KLFAS 180

Query: 181 TPIEDHIHMNLGMEAGLNILKKMSSDYSEAKKVALYEASEIVDVQDIKHISEDEGLIGDT 240
           T IE  IHM+LGME  LN+L+KMS++Y+EAKK A+ EASE+VDVQ++KHI +D+ L+GD 
Sbjct: 181 TRIEHFIHMDLGMEVDLNVLQKMSTEYAEAKKQAIQEASEVVDVQNVKHIVDDQELMGDV 240

Query: 241 VEKIAEDWNVQRGAFYEQVGHDQQLALVEAHE----EQEHHADENFDMELERML 290
           VEKI E+WNVQR  FY+Q   DQQ    E  +    + E   DE F  ELE++L
Sbjct: 241 VEKITENWNVQRELFYQQTRMDQQPPAAEQRQLQVKDDEQGGDEEFGQELEQLL 284

[Close]
BLAST of Cp4.1LG07g11290 vs. TrEMBL
Match: V4T0Z2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002076mg PE=4 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 6.2e-90
Identity = 178/294 (60.54%), Postives = 222/294 (75.51%), Query Frame = 1 

Query: 1   MDLSPFRLDIDELINEYAEGGFTSFADMKKVWIGRKFTYIFEAAP-LNLAFFMQSMYAQT 60
           MD SPF+ DIDELI+E+A+   T+ ADMK+VW+ RKF YI+EA P  NL+FFMQS+YA T
Sbjct: 1   MDFSPFKQDIDELIDEFAQDELTTLADMKRVWLSRKFAYIYEACPSTNLSFFMQSLYAHT 60

Query: 61  IGHMVSTASLSHRLGGLYCLYSLYETQPFKPSYKIYLSIGELKKLKELIVEAKEKNVKVA 120
           I HMVS  SLS RLGGLYCLY LYETQPFKP + IY+S+GELKKLK+L+VEAK K+++V 
Sbjct: 61  ICHMVSNDSLSRRLGGLYCLYCLYETQPFKPPFHIYISLGELKKLKKLVVEAKNKDIRVV 120

Query: 121 SAVVKRMLEKNMFLFGSVDMNESSALETVNQLTELQNARIQVAYDNNLDFYFWMSRLFAD 180
            A+VKRMLE  +FLFGSVD+NESS  ETV QLT+LQNAR+QVAY           +LFA 
Sbjct: 121 PALVKRMLENKIFLFGSVDLNESSIPETVKQLTDLQNARVQVAY----------KKLFAS 180

Query: 181 TPIEDHIHMNLGMEAGLNILKKMSSDYSEAKKVALYEASEIVDVQDIKHISEDEGLIGDT 240
           T IE  IHM+LG E  LN+LKKMS++Y+EAK  A+ EASE+VDVQ++KHI +D+ L+GD 
Sbjct: 181 TRIEHFIHMDLGAEVDLNVLKKMSTEYAEAKGQAIQEASEVVDVQNVKHIQDDQELMGDV 240

Query: 241 VEKIAEDWNVQRGAFYEQVGHDQQLALVEAHE----EQEHHADENFDMELERML 290
           V KIAE+WNVQ+  FY+Q   DQQ A  E  +    + E   DE+F  ELE++L
Sbjct: 241 VGKIAENWNVQKELFYQQTRMDQQPAAAEQTQLQVNDDEQGGDEDFGQELEQLL 284

[Close]
BLAST of Cp4.1LG07g11290 vs. TAIR10
Match: AT3G53270.1 (AT3G53270.1 Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein)

HSP 1 Score: 292.7 bits (748), Expect = 2.6e-79
Identity = 154/291 (52.92%), Postives = 212/291 (72.85%), Query Frame = 1 

Query: 1   MDLSPFRLDIDELINEYAEGGFTSFADMKKVWIGRKFTYIFEAAP-LNLAFFMQSMYAQT 60
           M+LSPF+ DIDELI+E+ E   T+FADMK VW+ RKF++I+EA+P  NLAFFMQS+Y  T
Sbjct: 1   MNLSPFKRDIDELIDEFVEDDLTTFADMKSVWLSRKFSHIYEASPNSNLAFFMQSLYVHT 60

Query: 61  IGHMVSTASLSHRLGGLYCLYSLYETQPFKPSYKIYLSIGELKKLKELIVEAKEKNVKVA 120
           IGHMVS  S S RLGGLYCLY L+E QPFKP ++IY+S+ EL K ++L+VEAK+K V++A
Sbjct: 61  IGHMVSIDSFSRRLGGLYCLYCLHEIQPFKPKFRIYISLQELGKFRDLVVEAKDKGVEIA 120

Query: 121 SAVVKRMLEKNMFLFGSVDMNESSALETVNQLTELQNARIQVAYDNNLDFYFWMSRLFAD 180
           +AV K+ML++NM +FG+VD  E+SA +T++QLTELQNAR++ AY+          +L  D
Sbjct: 121 AAVAKKMLDENMLIFGAVD--ETSATKTIHQLTELQNARVRFAYE----------KLICD 180

Query: 181 TPIEDHIHMNLGMEAGLNILKKMSSDYSEAKKVALYEASEIVDVQDIKHISEDEGLIGDT 240
           T I   IH+++G E  LN L KMS +Y+EAKK A+  A EI+++ DIKHISE++ L+G+ 
Sbjct: 181 TSINQFIHLDMGKEVDLNSLDKMSIEYAEAKKRAVEGAGEIMEIDDIKHISEEKELMGER 240

Query: 241 VEKIAEDWNVQRGAFYEQVGHDQQLALVEAHEEQEHHADENFDMELERMLT 291
           +EK+ E+W+ QR  FYEQ   D      +     EH  D+ FD EL+R+L+
Sbjct: 241 MEKLKEEWDSQRLYFYEQTKLDGFTTTPKQLTNVEHDEDDGFD-ELDRLLS 278

[Close]
BLAST of Cp4.1LG07g11290 vs. NCBI nr
Match: gi|778666211|ref|XP_011648706.1| (PREDICTED: uncharacterized protein LOC101216308 isoform X1 [Cucumis sativus])

HSP 1 Score: 441.4 bits (1134), Expect = 1.3e-120
Identity = 234/294 (79.59%), Postives = 254/294 (86.39%), Query Frame = 1 

Query: 1   MDLSPFRLDIDELINEYAEGGFTSFADMKKVWIGRKFTYIFEAAP-LNLAFFMQSMYAQT 60
           MDLSPFRLDIDELINE+AE GFTSF DMKKVWIGRKFTYIFEAAP  NLAFFMQS++AQ+
Sbjct: 1   MDLSPFRLDIDELINEFAECGFTSFVDMKKVWIGRKFTYIFEAAPSTNLAFFMQSIFAQS 60

Query: 61  IGHMVSTASLSHRLGGLYCLYSLYETQPFKPSYKIYLSIGELKKLKELIVEAKEKNVKVA 120
           I HM+STASL HRLGGLYCLY LYETQPF+P YKIYLSIGELKKLKEL+V+AKE NVKV 
Sbjct: 61  ISHMLSTASLPHRLGGLYCLYCLYETQPFRPPYKIYLSIGELKKLKELVVDAKENNVKVV 120

Query: 121 SAVVKRMLEKNMFLFGSVDMNESSALETVNQLTELQNARIQVAYDNNLDFYFWMSRLFAD 180
           S VVKRMLEKNMFLFGSVDMNES+ALETVNQLTELQNAR+QVAY           +LF D
Sbjct: 121 SFVVKRMLEKNMFLFGSVDMNESAALETVNQLTELQNARVQVAY----------KKLFND 180

Query: 181 TPIEDHIHMNLGMEAGLNILKKMSSDYSEAKKVALYEASEIVDVQDIKHISEDEGLIGDT 240
           TPI ++IHM+LGME G NIL KMS+DYSEAKK+ALYEAS+IVDVQDIKHI+EDE LIGDT
Sbjct: 181 TPIGNYIHMDLGMEVGSNILTKMSTDYSEAKKLALYEASKIVDVQDIKHIAEDEKLIGDT 240

Query: 241 VEKIAEDWNVQRGAFYEQVGHDQQLALVEAHEE-QEHHADENFDMELERMLTDV 293
           VEKIAEDWNVQRG FYEQ G DQQ   VEA ++  E HAD NFD ELERMLTDV
Sbjct: 241 VEKIAEDWNVQRGVFYEQTGLDQQSVPVEADQQLLEDHADVNFDKELERMLTDV 284

[Close]
BLAST of Cp4.1LG07g11290 vs. NCBI nr
Match: gi|659070894|ref|XP_008457139.1| (PREDICTED: uncharacterized protein LOC103496883 isoform X1 [Cucumis melo])

HSP 1 Score: 438.3 bits (1126), Expect = 1.1e-119
Identity = 231/294 (78.57%), Postives = 254/294 (86.39%), Query Frame = 1 

Query: 1   MDLSPFRLDIDELINEYAEGGFTSFADMKKVWIGRKFTYIFEAAP-LNLAFFMQSMYAQT 60
           MDLSPFRLDIDELINE+AE GFTSF DMKKVWIGRKFTYIFEAAP  NLAFFMQS++AQ+
Sbjct: 1   MDLSPFRLDIDELINEFAECGFTSFGDMKKVWIGRKFTYIFEAAPSTNLAFFMQSIFAQS 60

Query: 61  IGHMVSTASLSHRLGGLYCLYSLYETQPFKPSYKIYLSIGELKKLKELIVEAKEKNVKVA 120
           I HM S ASL HRLGGLYCLY LYETQPF+P YKIYLSIGELKKLKEL+++AKE NVKV 
Sbjct: 61  ISHMRSAASLPHRLGGLYCLYCLYETQPFRPPYKIYLSIGELKKLKELVIDAKENNVKVV 120

Query: 121 SAVVKRMLEKNMFLFGSVDMNESSALETVNQLTELQNARIQVAYDNNLDFYFWMSRLFAD 180
           S VVKRMLEKNMFLFGSVDMNES+ALETVNQLTELQNAR+QVAY          ++LF D
Sbjct: 121 SFVVKRMLEKNMFLFGSVDMNESAALETVNQLTELQNARVQVAY----------NKLFND 180

Query: 181 TPIEDHIHMNLGMEAGLNILKKMSSDYSEAKKVALYEASEIVDVQDIKHISEDEGLIGDT 240
           TPIE++IHM+LGME G N+L KMS+DYSEAKK+ALYEAS+IVDVQDIKHI+EDE LIGDT
Sbjct: 181 TPIENYIHMDLGMEVGSNLLTKMSTDYSEAKKLALYEASKIVDVQDIKHIAEDEKLIGDT 240

Query: 241 VEKIAEDWNVQRGAFYEQVGHDQQLALVEAHEE-QEHHADENFDMELERMLTDV 293
           VEKIAEDWNVQRG FYEQ G DQQL  VEA ++  E H D +FD ELERMLTDV
Sbjct: 241 VEKIAEDWNVQRGVFYEQTGLDQQLIPVEADQQLLEDHTDVDFDKELERMLTDV 284

[Close]
BLAST of Cp4.1LG07g11290 vs. NCBI nr
Match: gi|778666225|ref|XP_011648709.1| (PREDICTED: uncharacterized protein LOC101216308 isoform X2 [Cucumis sativus])

HSP 1 Score: 434.9 bits (1117), Expect = 1.2e-118
Identity = 233/294 (79.25%), Postives = 253/294 (86.05%), Query Frame = 1 

Query: 1   MDLSPFRLDIDELINEYAEGGFTSFADMKKVWIGRKFTYIFEAAP-LNLAFFMQSMYAQT 60
           MDLSPFRLDIDELINE+AE GFTSF DMKKVWIGRKFTYIFEAAP  NLAFFMQS++AQ+
Sbjct: 1   MDLSPFRLDIDELINEFAECGFTSFVDMKKVWIGRKFTYIFEAAPSTNLAFFMQSIFAQS 60

Query: 61  IGHMVSTASLSHRLGGLYCLYSLYETQPFKPSYKIYLSIGELKKLKELIVEAKEKNVKVA 120
           I HM+STASL HRLGGLYCLY LYETQPF+P YKIYLSIGELKKLKEL+V+AKE NVKV 
Sbjct: 61  ISHMLSTASLPHRLGGLYCLYCLYETQPFRPPYKIYLSIGELKKLKELVVDAKENNVKVV 120

Query: 121 SAVVKRMLEKNMFLFGSVDMNESSALETVNQLTELQNARIQVAYDNNLDFYFWMSRLFAD 180
           S VVKRMLEKNMFLFGSVDMNES+ALETVNQLTELQNAR+QVAY           +LF D
Sbjct: 121 SFVVKRMLEKNMFLFGSVDMNESAALETVNQLTELQNARVQVAY----------KKLFND 180

Query: 181 TPIEDHIHMNLGMEAGLNILKKMSSDYSEAKKVALYEASEIVDVQDIKHISEDEGLIGDT 240
           TPI ++IHM+LGME G NIL KMS+DYSEAKK+ALY AS+IVDVQDIKHI+EDE LIGDT
Sbjct: 181 TPIGNYIHMDLGMEVGSNILTKMSTDYSEAKKLALY-ASKIVDVQDIKHIAEDEKLIGDT 240

Query: 241 VEKIAEDWNVQRGAFYEQVGHDQQLALVEAHEE-QEHHADENFDMELERMLTDV 293
           VEKIAEDWNVQRG FYEQ G DQQ   VEA ++  E HAD NFD ELERMLTDV
Sbjct: 241 VEKIAEDWNVQRGVFYEQTGLDQQSVPVEADQQLLEDHADVNFDKELERMLTDV 283

[Close]
BLAST of Cp4.1LG07g11290 vs. NCBI nr
Match: gi|659070898|ref|XP_008457155.1| (PREDICTED: uncharacterized protein LOC103496883 isoform X2 [Cucumis melo])

HSP 1 Score: 431.8 bits (1109), Expect = 1.0e-117
Identity = 230/294 (78.23%), Postives = 253/294 (86.05%), Query Frame = 1 

Query: 1   MDLSPFRLDIDELINEYAEGGFTSFADMKKVWIGRKFTYIFEAAP-LNLAFFMQSMYAQT 60
           MDLSPFRLDIDELINE+AE GFTSF DMKKVWIGRKFTYIFEAAP  NLAFFMQS++AQ+
Sbjct: 1   MDLSPFRLDIDELINEFAECGFTSFGDMKKVWIGRKFTYIFEAAPSTNLAFFMQSIFAQS 60

Query: 61  IGHMVSTASLSHRLGGLYCLYSLYETQPFKPSYKIYLSIGELKKLKELIVEAKEKNVKVA 120
           I HM S ASL HRLGGLYCLY LYETQPF+P YKIYLSIGELKKLKEL+++AKE NVKV 
Sbjct: 61  ISHMRSAASLPHRLGGLYCLYCLYETQPFRPPYKIYLSIGELKKLKELVIDAKENNVKVV 120

Query: 121 SAVVKRMLEKNMFLFGSVDMNESSALETVNQLTELQNARIQVAYDNNLDFYFWMSRLFAD 180
           S VVKRMLEKNMFLFGSVDMNES+ALETVNQLTELQNAR+QVAY          ++LF D
Sbjct: 121 SFVVKRMLEKNMFLFGSVDMNESAALETVNQLTELQNARVQVAY----------NKLFND 180

Query: 181 TPIEDHIHMNLGMEAGLNILKKMSSDYSEAKKVALYEASEIVDVQDIKHISEDEGLIGDT 240
           TPIE++IHM+LGME G N+L KMS+DYSEAKK+ALY AS+IVDVQDIKHI+EDE LIGDT
Sbjct: 181 TPIENYIHMDLGMEVGSNLLTKMSTDYSEAKKLALY-ASKIVDVQDIKHIAEDEKLIGDT 240

Query: 241 VEKIAEDWNVQRGAFYEQVGHDQQLALVEAHEE-QEHHADENFDMELERMLTDV 293
           VEKIAEDWNVQRG FYEQ G DQQL  VEA ++  E H D +FD ELERMLTDV
Sbjct: 241 VEKIAEDWNVQRGVFYEQTGLDQQLIPVEADQQLLEDHTDVDFDKELERMLTDV 283

[Close]
BLAST of Cp4.1LG07g11290 vs. NCBI nr
Match: gi|596182687|ref|XP_007223302.1| (hypothetical protein PRUPE_ppa009480mg [Prunus persica])

HSP 1 Score: 350.9 bits (899), Expect = 2.3e-93
Identity = 180/300 (60.00%), Postives = 233/300 (77.67%), Query Frame = 1 

Query: 1   MDLSPFRLDIDELINEYAEGGFTSFADMKKVWIGRKFTYIFEAAP-LNLAFFMQSMYAQT 60
           MDL+PF+ DIDELI+ +AEG  TS ADMK++W+ +KF+YI+EA P  NLAFFMQS+YA +
Sbjct: 1   MDLTPFKRDIDELIDAFAEGESTSLADMKRIWLSKKFSYIYEARPSTNLAFFMQSLYAHS 60

Query: 61  IGHMVSTASLSHRLGGLYCLYSLYETQPFKPSYKIYLSIGELKKLKELIVEAKEKNVKVA 120
           IG+++ TA+LSHRLGGLYCL+ LYETQPFKP +KIYLS+ ELKKL++L++ AKE +++V 
Sbjct: 61  IGYIIGTATLSHRLGGLYCLFCLYETQPFKPPFKIYLSLEELKKLRKLVINAKEHDIRVV 120

Query: 121 SAVVKRMLEKNMFLFGSVDMNESSALETVNQLTELQNARIQVAYDNNLDFYFWMSRLFAD 180
           SA+VKRMLEKN+FLFGSVD NE S  ETV+QLT+LQNAR+QVAY            LFA+
Sbjct: 121 SALVKRMLEKNVFLFGSVDTNEGSFTETVDQLTQLQNARVQVAY----------KELFAN 180

Query: 181 TPIEDHIHMNLGMEAGLNILKKMSSDYSEAKKVALYEASEIVDVQDIKHISEDEGLIGDT 240
           T IED +HM+LGME  LN+LKKMS+DY+EAKK+A+ EAS++VDVQDIKHISED+ L+GD 
Sbjct: 181 TKIEDFLHMDLGMEVDLNMLKKMSTDYAEAKKIAINEASKVVDVQDIKHISEDKELVGDA 240

Query: 241 VEKIAEDWNVQRGAFYEQVGHDQQLALVEAHEEQEH--------HADENFDMELERMLTD 292
           VEK+   W+ QR  FY+Q G +Q+L   E   E +           DENFD ELE++L++
Sbjct: 241 VEKMVGQWDAQREVFYQQTGANQKLPEGEQQLEPQQLQLQLQLLSDDENFDQELEQLLSE 290

The following BLAST results are available for this feature:
BLAST of Cp4.1LG07g11290 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG07g11290 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LL25_CUCSA8.9e-12179.59Uncharacterized protein OS=Cucumis sativus GN=Csa_2G008040 PE=4 SV=1[more]
M5XGB0_PRUPE1.6e-9360.00Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009480mg PE=4 SV=1[more]
U5G664_POPTR6.0e-9360.20Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s06470g PE=4 SV=1[more]
V4TH10_9ROSI1.1e-9161.56Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032301mg PE=4 SV=1[more]
V4T0Z2_9ROSI6.2e-9060.54Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002076mg PE=4 SV=1[more]
BLAST of Cp4.1LG07g11290 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G53270.12.6e-7952.92 Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein[more]
BLAST of Cp4.1LG07g11290 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778666211|ref|XP_011648706.1|1.3e-12079.59PREDICTED: uncharacterized protein LOC101216308 isoform X1 [Cucumis sativus][more]
gi|659070894|ref|XP_008457139.1|1.1e-11978.57PREDICTED: uncharacterized protein LOC103496883 isoform X1 [Cucumis melo][more]
gi|778666225|ref|XP_011648709.1|1.2e-11879.25PREDICTED: uncharacterized protein LOC101216308 isoform X2 [Cucumis sativus][more]
gi|659070898|ref|XP_008457155.1|1.0e-11778.23PREDICTED: uncharacterized protein LOC103496883 isoform X2 [Cucumis melo][more]
gi|596182687|ref|XP_007223302.1|2.3e-9360.00hypothetical protein PRUPE_ppa009480mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019188SNAPc_SNAP43
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0034314 Arp2/3 complex-mediated actin nucleation
biological_process GO:0009247 glycolipid biosynthetic process
biological_process GO:0030259 lipid glycosylation
biological_process GO:0042796 snRNA transcription from RNA polymerase III promoter
biological_process GO:0042795 snRNA transcription from RNA polymerase II promoter
cellular_component GO:0005575 cellular_component
cellular_component GO:0005885 Arp2/3 protein complex
cellular_component GO:0019185 snRNA-activating protein complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0030246 carbohydrate binding
molecular_function GO:0005525 GTP binding
molecular_function GO:0016817 hydrolase activity, acting on acid anhydrides
molecular_function GO:0016758 transferase activity, transferring hexosyl groups
molecular_function GO:0043565 sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG07g11290.1Cp4.1LG07g11290.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019188Small nuclear RNA activating complex (SNAPc), subunit SNAP43PANTHERPTHR15131SMALL NUCLEAR RNA ACTIVATING COMPLEX, POLYPEPTIDE 1coord: 1..294
score: 2.4
IPR019188Small nuclear RNA activating complex (SNAPc), subunit SNAP43PFAMPF09808SNAPc_SNAP43coord: 6..210
score: 2.1
NoneNo IPR availableunknownCoilCoilcoord: 101..121
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG07g11290Cucsa.132410Cucumber (Gy14) v1cgycpeB0355
Cp4.1LG07g11290CmaCh12G011880Cucurbita maxima (Rimu)cmacpeB206
Cp4.1LG07g11290Cla016681Watermelon (97103) v1cpewmB815
Cp4.1LG07g11290Csa2G008040Cucumber (Chinese Long) v2cpecuB812
Cp4.1LG07g11290MELO3C004466Melon (DHL92) v3.5.1cpemeB774
Cp4.1LG07g11290ClCG11G003340Watermelon (Charleston Gray)cpewcgB718
Cp4.1LG07g11290CSPI02G02010Wild cucumber (PI 183967)cpecpiB813
Cp4.1LG07g11290Lsi11G003470Bottle gourd (USVL1VR-Ls)cpelsiB655
Cp4.1LG07g11290MELO3C004466.2Melon (DHL92) v3.6.1cpemedB910
Cp4.1LG07g11290Bhi06G001610Wax gourdcpewgoB1017
Cp4.1LG07g11290CsGy2G002100Cucumber (Gy14) v2cgybcpeB262
Cp4.1LG07g11290Carg17486Silver-seed gourdcarcpeB0362
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG07g11290Wax gourdcpewgoB1066
Cp4.1LG07g11290Cucurbita pepo (Zucchini)cpecpeB147
Cp4.1LG07g11290Cucumber (Gy14) v1cgycpeB0831
Cp4.1LG07g11290Cucurbita maxima (Rimu)cmacpeB798
Cp4.1LG07g11290Cucurbita moschata (Rifu)cmocpeB178
Cp4.1LG07g11290Cucurbita moschata (Rifu)cmocpeB751
Cp4.1LG07g11290Wild cucumber (PI 183967)cpecpiB831
Cp4.1LG07g11290Cucumber (Chinese Long) v2cpecuB830
Cp4.1LG07g11290Bottle gourd (USVL1VR-Ls)cpelsiB679
Cp4.1LG07g11290Watermelon (Charleston Gray)cpewcgB743
Cp4.1LG07g11290Watermelon (97103) v1cpewmB799
Cp4.1LG07g11290Melon (DHL92) v3.5.1cpemeB768
Cp4.1LG07g11290Melon (DHL92) v3.5.1cpemeB778
Cp4.1LG07g11290Cucumber (Gy14) v2cgybcpeB443
Cp4.1LG07g11290Melon (DHL92) v3.6.1cpemedB905
Cp4.1LG07g11290Melon (DHL92) v3.6.1cpemedB914
Cp4.1LG07g11290Silver-seed gourdcarcpeB0815
Cp4.1LG07g11290Cucumber (Chinese Long) v3cpecucB1006
Cp4.1LG07g11290Cucumber (Chinese Long) v3cpecucB1023