Csa2G004710 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G004710
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionArabinogalactan peptide 22; contains IPR009424 (Arabinogalactan peptide, AGP)
LocationChr2 : 771250 .. 771901 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGATTCACCCCATTTCCTTTCCCCATATAAATACCCTAACCTTCAAATCCCCAATTCCAAAATTCACCTTCTAAATTTTCGTCAATTTTTGCAGTCGATTCACAAAACATGAGTTCGTTGAAGCTCACAGCCGTTCCGATCGTCGGATTCTTGTTCTTGATTGTTCTTCAATTGGCTCACGGCCATTCCCACGATATTTCACCTGCGGCGGGTCCTTCTAACGACGGTGAGTTCCTGGCTCTGTATTACGATTTTGTACATGTGGTTTGATCTAATCTCTGTGATTTGAATCTAACTTTTCAATCTAAATTCTGTAAATTGAAGTGTTTGTTTGAGAACATAAGTTTGAGAATCACTTGATTTGTTCTCATTTGAAATTTTTTAGTTTAGTTTTGTATTTTAGTTCATTTATCTCAATAATTTCGTCTTCTATATGTTCTTAACATTCAAAATTACAATTTTCAAAGACGATTTCATATTTATTAAAAGGCCTAATGTTTGTTAATTGTTGTTGCAGGAGCTGCAATTGACCAAGGGATTGCGTACGTTCTTCTTCTGCTTGCTCTGGCCGTTACTTACATCGTCCATTGACAACGTTTGTACTAATAAAATGATTTTGGGTTCCATATGTAATATTTTTTGTAGTTTTTT

mRNA sequence

ATGAGTTCGTTGAAGCTCACAGCCGTTCCGATCGTCGGATTCTTGTTCTTGATTGTTCTTCAATTGGCTCACGGCCATTCCCACGATATTTCACCTGCGGCGGGTCCTTCTAACGACGGAGCTGCAATTGACCAAGGGATTGCGTACGTTCTTCTTCTGCTTGCTCTGGCCGTTACTTACATCGTCCATTGA

Coding sequence (CDS)

ATGAGTTCGTTGAAGCTCACAGCCGTTCCGATCGTCGGATTCTTGTTCTTGATTGTTCTTCAATTGGCTCACGGCCATTCCCACGATATTTCACCTGCGGCGGGTCCTTCTAACGACGGAGCTGCAATTGACCAAGGGATTGCGTACGTTCTTCTTCTGCTTGCTCTGGCCGTTACTTACATCGTCCATTGA

Protein sequence

MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH*
Homology
[Close]
BLAST of Csa2G004710 vs. Swiss-Prot
Match: AGP22_ARATH (Arabinogalactan peptide 22 OS=Arabidopsis thaliana GN=AGP22 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 9.4e-10
Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 1 

Query: 1  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTY 60
          M+SLK     +  F+ + V+ L    SH  SPA  P++DG +IDQGIAYVL+++ALA+TY
Sbjct: 1  MASLKFPLEILAVFVIISVILLPIAQSHSSSPAPAPTSDGTSIDQGIAYVLMMVALALTY 60

Query: 61 IVH 64
           +H
Sbjct: 61 FIH 63

[Close]
BLAST of Csa2G004710 vs. Swiss-Prot
Match: AGP16_ARATH (Arabinogalactan peptide 16 OS=Arabidopsis thaliana GN=AGP16 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.1e-08
Identity = 25/58 (43.10%), Postives = 41/58 (70.69%), Query Frame = 1 

Query: 6  LTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH 64
          +T   +  F+F ++L LA   S  ++PA  P++DG +IDQGIAY+L+++AL +TY++H
Sbjct: 7  VTGFALFSFVFAVILSLAGAQS--LAPAPAPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

[Close]
BLAST of Csa2G004710 vs. Swiss-Prot
Match: AGP20_ARATH (Arabinogalactan peptide 20 OS=Arabidopsis thaliana GN=AGP20 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.3e-06
Identity = 22/58 (37.93%), Postives = 39/58 (67.24%), Query Frame = 1 

Query: 6  LTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH 64
          +  + +  F+F ++   A   S  ++PA  P++DG +IDQGIAY+L+++AL +TY++H
Sbjct: 7  VAVIALFAFVFAVISPFAGAQS--LAPAPSPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

[Close]
BLAST of Csa2G004710 vs. TrEMBL
Match: A0A0A0LIU0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G004710 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 5.0e-26
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 1  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTY 60
          MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTY
Sbjct: 1  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTY 60

Query: 61 IVH 64
          IVH
Sbjct: 61 IVH 63

[Close]
BLAST of Csa2G004710 vs. TrEMBL
Match: B9ILL2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s05900g PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.8e-13
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 1 

Query: 1  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTY 60
          MSS++L A+PI+GF+FL +L+   G     SPA GP+NDG  IDQGIAYVLL+LALA+TY
Sbjct: 1  MSSMRLHALPIIGFMFLALLEFGFGQGTAPSPAEGPTNDGKTIDQGIAYVLLMLALAITY 60

Query: 61 IVH 64
          + H
Sbjct: 61 LFH 63

[Close]
BLAST of Csa2G004710 vs. TrEMBL
Match: A0A067E6Q0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g036245mg PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 4.8e-13
Identity = 35/63 (55.56%), Postives = 52/63 (82.54%), Query Frame = 1 

Query: 1  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTY 60
          M+S++L A+P++GF+F+ +LQL +  +   SPA  PS+DG AIDQGIAY+L++LALA+TY
Sbjct: 2  MNSMRLYALPVIGFMFMAILQLGNAQNMAPSPAPAPSSDGTAIDQGIAYILMVLALAITY 61

Query: 61 IVH 64
          +VH
Sbjct: 62 LVH 64

[Close]
BLAST of Csa2G004710 vs. TrEMBL
Match: V4WD40_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010340mg PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 4.8e-13
Identity = 35/63 (55.56%), Postives = 52/63 (82.54%), Query Frame = 1 

Query: 1  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTY 60
          M+S++L A+P++GF+F+ +LQL +  +   SPA  PS+DG AIDQGIAY+L++LALA+TY
Sbjct: 2  MNSMRLYALPVIGFMFMAILQLGNAQNMAPSPAPAPSSDGTAIDQGIAYILMVLALAITY 61

Query: 61 IVH 64
          +VH
Sbjct: 62 LVH 64

[Close]
BLAST of Csa2G004710 vs. TrEMBL
Match: A0A067KBQ4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07227 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 6.3e-13
Identity = 41/64 (64.06%), Postives = 51/64 (79.69%), Query Frame = 1 

Query: 1  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAA-GPSNDGAAIDQGIAYVLLLLALAVT 60
          MS + L A+PI+GF+FL +LQL HG +   SPAA GPS+DG  IDQGIAYVL+L+ALAVT
Sbjct: 1  MSPMNLYALPIIGFMFLALLQLGHGQAIAPSPAAEGPSSDGNTIDQGIAYVLMLVALAVT 60

Query: 61 YIVH 64
          Y+ H
Sbjct: 61 YLFH 64

[Close]
BLAST of Csa2G004710 vs. TAIR10
Match: AT5G53250.1 (AT5G53250.1 arabinogalactan protein 22)

HSP 1 Score: 63.5 bits (153), Expect = 5.3e-11
Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 1 

Query: 1  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTY 60
          M+SLK     +  F+ + V+ L    SH  SPA  P++DG +IDQGIAYVL+++ALA+TY
Sbjct: 1  MASLKFPLEILAVFVIISVILLPIAQSHSSSPAPAPTSDGTSIDQGIAYVLMMVALALTY 60

Query: 61 IVH 64
           +H
Sbjct: 61 FIH 63

[Close]
BLAST of Csa2G004710 vs. TAIR10
Match: AT5G24105.1 (AT5G24105.1 arabinogalactan protein 41)

HSP 1 Score: 60.1 bits (144), Expect = 5.8e-10
Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 1 

Query: 11 IVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH 64
          IV  +F I+L +AH  S   +PA  P++DG  IDQGIAYVL+L+AL +TY++H
Sbjct: 13 IVSIIFAILLPMAHAQS--AAPAPAPTSDGTTIDQGIAYVLMLVALVLTYLIH 63

[Close]
BLAST of Csa2G004710 vs. TAIR10
Match: AT2G46330.1 (AT2G46330.1 arabinogalactan protein 16)

HSP 1 Score: 57.8 bits (138), Expect = 2.9e-09
Identity = 25/58 (43.10%), Postives = 41/58 (70.69%), Query Frame = 1 

Query: 6  LTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH 64
          +T   +  F+F ++L LA   S  ++PA  P++DG +IDQGIAY+L+++AL +TY++H
Sbjct: 7  VTGFALFSFVFAVILSLAGAQS--LAPAPAPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

[Close]
BLAST of Csa2G004710 vs. TAIR10
Match: AT3G61640.1 (AT3G61640.1 arabinogalactan protein 20)

HSP 1 Score: 53.1 bits (126), Expect = 7.1e-08
Identity = 22/58 (37.93%), Postives = 39/58 (67.24%), Query Frame = 1 

Query: 6  LTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTYIVH 64
          +  + +  F+F ++   A   S  ++PA  P++DG +IDQGIAY+L+++AL +TY++H
Sbjct: 7  VAVIALFAFVFAVISPFAGAQS--LAPAPSPTSDGTSIDQGIAYLLMVVALVLTYLIH 62

[Close]
BLAST of Csa2G004710 vs. NCBI nr
Match: gi|700205503|gb|KGN60622.1| (hypothetical protein Csa_2G004710 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 7.2e-26
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 1  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTY 60
          MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTY
Sbjct: 1  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTY 60

Query: 61 IVH 64
          IVH
Sbjct: 61 IVH 63

[Close]
BLAST of Csa2G004710 vs. NCBI nr
Match: gi|659071133|ref|XP_008458289.1| (PREDICTED: arabinogalactan peptide 22-like [Cucumis melo])

HSP 1 Score: 119.8 bits (299), Expect = 1.8e-24
Identity = 58/63 (92.06%), Postives = 61/63 (96.83%), Query Frame = 1 

Query: 1  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTY 60
          MSSLKLTAVP VGFLFLI+LQLAHGHSHDISPA GPSNDGAAIDQGIAYVLLLLALA+TY
Sbjct: 1  MSSLKLTAVPFVGFLFLIILQLAHGHSHDISPAEGPSNDGAAIDQGIAYVLLLLALAITY 60

Query: 61 IVH 64
          I+H
Sbjct: 61 IIH 63

[Close]
BLAST of Csa2G004710 vs. NCBI nr
Match: gi|224143520|ref|XP_002324983.1| (hypothetical protein POPTR_0018s05900g [Populus trichocarpa])

HSP 1 Score: 82.0 bits (201), Expect = 4.1e-13
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 1 

Query: 1  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTY 60
          MSS++L A+PI+GF+FL +L+   G     SPA GP+NDG  IDQGIAYVLL+LALA+TY
Sbjct: 1  MSSMRLHALPIIGFMFLALLEFGFGQGTAPSPAEGPTNDGKTIDQGIAYVLLMLALAITY 60

Query: 61 IVH 64
          + H
Sbjct: 61 LFH 63

[Close]
BLAST of Csa2G004710 vs. NCBI nr
Match: gi|567918266|ref|XP_006451139.1| (hypothetical protein CICLE_v10010340mg [Citrus clementina])

HSP 1 Score: 81.3 bits (199), Expect = 6.9e-13
Identity = 35/63 (55.56%), Postives = 52/63 (82.54%), Query Frame = 1 

Query: 1  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAAGPSNDGAAIDQGIAYVLLLLALAVTY 60
          M+S++L A+P++GF+F+ +LQL +  +   SPA  PS+DG AIDQGIAY+L++LALA+TY
Sbjct: 2  MNSMRLYALPVIGFMFMAILQLGNAQNMAPSPAPAPSSDGTAIDQGIAYILMVLALAITY 61

Query: 61 IVH 64
          +VH
Sbjct: 62 LVH 64

[Close]
BLAST of Csa2G004710 vs. NCBI nr
Match: gi|643724455|gb|KDP33656.1| (hypothetical protein JCGZ_07227 [Jatropha curcas])

HSP 1 Score: 80.9 bits (198), Expect = 9.1e-13
Identity = 41/64 (64.06%), Postives = 51/64 (79.69%), Query Frame = 1 

Query: 1  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPAA-GPSNDGAAIDQGIAYVLLLLALAVT 60
          MS + L A+PI+GF+FL +LQL HG +   SPAA GPS+DG  IDQGIAYVL+L+ALAVT
Sbjct: 1  MSPMNLYALPIIGFMFLALLQLGHGQAIAPSPAAEGPSSDGNTIDQGIAYVLMLVALAVT 60

Query: 61 YIVH 64
          Y+ H
Sbjct: 61 YLFH 64

The following BLAST results are available for this feature:
BLAST of Csa2G004710 vs. Swiss-Prot
Match NameE-valueIdentityDescription
AGP22_ARATH9.4e-1047.62Arabinogalactan peptide 22 OS=Arabidopsis thaliana GN=AGP22 PE=3 SV=1[more]
AGP16_ARATH5.1e-0843.10Arabinogalactan peptide 16 OS=Arabidopsis thaliana GN=AGP16 PE=1 SV=1[more]
AGP20_ARATH1.3e-0637.93Arabinogalactan peptide 20 OS=Arabidopsis thaliana GN=AGP20 PE=3 SV=1[more]
BLAST of Csa2G004710 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LIU0_CUCSA5.0e-26100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G004710 PE=4 SV=1[more]
B9ILL2_POPTR2.8e-1360.32Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s05900g PE=4 SV=1[more]
A0A067E6Q0_CITSI4.8e-1355.56Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g036245mg PE=4 SV=1[more]
V4WD40_9ROSI4.8e-1355.56Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010340mg PE=4 SV=1[more]
A0A067KBQ4_JATCU6.3e-1364.06Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07227 PE=4 SV=1[more]
BLAST of Csa2G004710 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G53250.15.3e-1147.62 arabinogalactan protein 22[more]
AT5G24105.15.8e-1052.83 arabinogalactan protein 41[more]
AT2G46330.12.9e-0943.10 arabinogalactan protein 16[more]
AT3G61640.17.1e-0837.93 arabinogalactan protein 20[more]
BLAST of Csa2G004710 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205503|gb|KGN60622.1|7.2e-26100.00hypothetical protein Csa_2G004710 [Cucumis sativus][more]
gi|659071133|ref|XP_008458289.1|1.8e-2492.06PREDICTED: arabinogalactan peptide 22-like [Cucumis melo][more]
gi|224143520|ref|XP_002324983.1|4.1e-1360.32hypothetical protein POPTR_0018s05900g [Populus trichocarpa][more]
gi|567918266|ref|XP_006451139.1|6.9e-1355.56hypothetical protein CICLE_v10010340mg [Citrus clementina][more]
gi|643724455|gb|KDP33656.1|9.1e-1364.06hypothetical protein JCGZ_07227 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009424AGP16/20/22/41
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU132625cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G004710.1Csa2G004710.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU132625CU132625transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009424Arabinogalactan peptide, AGPPFAMPF06376DUF1070coord: 32..63
score: 8.4
NoneNo IPR availablePANTHERPTHR33374FAMILY NOT NAMEDcoord: 1..63
score: 2.7
NoneNo IPR availablePANTHERPTHR33374:SF7SUBFAMILY NOT NAMEDcoord: 1..63
score: 2.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa2G004710Cla016762Watermelon (97103) v1cuwmB162
Csa2G004710MELO3C004554Melon (DHL92) v3.5.1cumeB140
Csa2G004710ClCG11G002500Watermelon (Charleston Gray)cuwcgB096
Csa2G004710Lsi11G002650Bottle gourd (USVL1VR-Ls)culsiB098
Csa2G004710MELO3C004554.2Melon (DHL92) v3.6.1cumedB133
Csa2G004710Cla97C11G208920Watermelon (97103) v2cuwmbB103
Csa2G004710Bhi06G001729Wax gourdcuwgoB131
Csa2G004710CSPI02G01210Wild cucumber (PI 183967)cpicuB065
Csa2G004710CmaCh12G012450Cucurbita maxima (Rimu)cmacuB173
Csa2G004710CmoCh12G012760Cucurbita moschata (Rifu)cmocuB157
Csa2G004710Cp4.1LG07g10210Cucurbita pepo (Zucchini)cpecuB821
Csa2G004710CsGy2G001210Cucumber (Gy14) v2cgybcuB056
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G004710Wax gourdcuwgoB214
Csa2G004710Cucumber (Gy14) v1cgycuB150
Csa2G004710Cucurbita maxima (Rimu)cmacuB075
Csa2G004710Cucurbita maxima (Rimu)cmacuB119
Csa2G004710Cucurbita maxima (Rimu)cmacuB791
Csa2G004710Cucurbita moschata (Rifu)cmocuB065
Csa2G004710Cucurbita moschata (Rifu)cmocuB105
Csa2G004710Cucurbita moschata (Rifu)cmocuB783
Csa2G004710Melon (DHL92) v3.5.1cumeB090
Csa2G004710Cucurbita pepo (Zucchini)cpecuB103
Csa2G004710Cucurbita pepo (Zucchini)cpecuB370
Csa2G004710Cucurbita pepo (Zucchini)cpecuB662
Csa2G004710Bottle gourd (USVL1VR-Ls)culsiB131
Csa2G004710Melon (DHL92) v3.6.1cumedB109
Csa2G004710Silver-seed gourdcarcuB0042
Csa2G004710Silver-seed gourdcarcuB0139
Csa2G004710Silver-seed gourdcarcuB0304
Csa2G004710Silver-seed gourdcarcuB0598