Bhi06G001729 (gene) Wax gourd

NameBhi06G001729
Typegene
OrganismBenincasa hispida (Wax gourd)
DescriptionArabinogalactan protein 22, putative
Locationchr6 : 55779162 .. 55780502 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACTCTTCAAGTCGATTCAAAAAATATGAGTTCGTTGAAGCTTACTGCCGTTCCGATGGTCGGATTCATCTTCTTGATTCTTCTTCAATTGGCTCACGCCCACTCTCACGATATTTCTCCGACGCCGGCGGGTCCTTCTAACGACGGTGAGTTACCGGCGGTATTACAAATTTGATCACATGGTTTGGTTTCGTTACTGAGATTTTGAAATTATTACCACTTATTTTCAATTTAGTTCTTCAATCTAATTTCTGAAATGTGAATTTAGTTTTAATCGGGTATGTTAGATCTGAAATTTTGTTCGTTTGGTTTTATAACTTAGTTCAATTTTATAAATTTTCTTTATGTTTTAACATTTGATATTACAAATTTAAAAGACTGTTTCTAATAGGAAAATGGTTTTAAATGTTAAAATTATTTTTAAATATAGCAACATCTGTCTATCACCCTTTCTCACTAATTAACCGTAATATGTTGTTATATTTATAAATATTTTGATTACGTTTTTTATTTAAAAACAAATTTTTTATAAGACAAAAATGGTTTTAATTCTTTCAAAAATATTTATAGATGTAATAAAGTTTTGTTATTGTTATATTTTTAAAAAGGATTGTTGTATGATATGATAAAAATTATTGTCCTATAAAAATCATGAGTTAAAATCATTCTTATCATATTTAACTAGTTAAAAGTTTTTTTAAAAAAAAATGTTAAAATTATCCTTATCAAGTTTAAAACCACTTATCAACCTTTAATCACTAAAAATCAATTTAATATTATATTTTTAAATGTATTTTCGGACTAATAAAACTATTTTAAATTATTAAAAACATTTTTCAACCATCTAAAAATAAAAATATAAAAAGCGATTTTAACTATTTTAAATTATACTTGAATTACTCCTAAACTTAATTAATTGATTGATTAAATTAAATTGTATTAGTATTATTAGGATAATCGCTTTAAATGACAAATATAGTAAAATGACACTGAATTATTAGTAATAAATACTTATAGACATCTATTAGCATTGATAAGAATATTTTTAAATATAACAAAATTAATTTATTTATTTATAGAGGTATCTTTTTAAATATAAAAAAAAAATCTAAATTTTATAGGAAAAAGTTTCAAAATACAAACACTTTTGAAACTTTTGGCTATAAAATAGAATTTTTTTTTTTCTATTTATAAGAATTTCTCATTTATTTAAATATAAAAAAAAAATGTGACCATGTAATATTTGCGGTATTATTATCGTTGCAGGAGCTGCAATTGACCAAGGGATTGCGTATGTTCTTCTTCTAGTTGCTCTTGTTGTTACTTACATCATCCATTAA

mRNA sequence

AAACTCTTCAAGTCGATTCAAAAAATATGAGTTCGTTGAAGCTTACTGCCGTTCCGATGGTCGGATTCATCTTCTTGATTCTTCTTCAATTGGCTCACGCCCACTCTCACGATATTTCTCCGACGCCGGCGGGTCCTTCTAACGACGGAGCTGCAATTGACCAAGGGATTGCGTATGTTCTTCTTCTAGTTGCTCTTGTTGTTACTTACATCATCCATTAA

Coding sequence (CDS)

AAACTCTTCAAGTCGATTCAAAAAATATGAGTTCGTTGAAGCTTACTGCCGTTCCGATGGTCGGATTCATCTTCTTGATTCTTCTTCAATTGGCTCACGCCCACTCTCACGATATTTCTCCGACGCCGGCGGGTCCTTCTAACGACGGAGCTGCAATTGACCAAGGGATTGCGTATGTTCTTCTTCTAGTTGCTCTTGTTGTTACTTACATCATCCATTAA

Protein sequence

TLQVDSKNMSSLKLTAVPMVGFIFLILLQLAHAHSHDISPTPAGPSNDGAAIDQGIAYVLLLVALVVTYIIH
BLAST of Bhi06G001729 vs. Swiss-Prot
Match: sp|Q8L9T8|AGP41_ARATH (Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 3.6e-05
Identity = 24/34 (70.59%), Postives = 30/34 (88.24%), Query Frame = 0

Query: 39 SPTPAGPSNDGAAIDQGIAYVLLLVALVVTYIIH 73
          +P PA P++DG  IDQGIAYVL+LVALV+TY+IH
Sbjct: 31 APAPA-PTSDGTTIDQGIAYVLMLVALVLTYLIH 63

BLAST of Bhi06G001729 vs. Swiss-Prot
Match: sp|O82337|AGP16_ARATH (Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.4e-04
Identity = 22/34 (64.71%), Postives = 31/34 (91.18%), Query Frame = 0

Query: 39 SPTPAGPSNDGAAIDQGIAYVLLLVALVVTYIIH 73
          +P PA P++DG +IDQGIAY+L++VALV+TY+IH
Sbjct: 30 APAPA-PTSDGTSIDQGIAYLLMVVALVLTYLIH 62

BLAST of Bhi06G001729 vs. Swiss-Prot
Match: sp|Q9M373|AGP20_ARATH (Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.0e-04
Identity = 21/34 (61.76%), Postives = 31/34 (91.18%), Query Frame = 0

Query: 39 SPTPAGPSNDGAAIDQGIAYVLLLVALVVTYIIH 73
          +P P+ P++DG +IDQGIAY+L++VALV+TY+IH
Sbjct: 30 APAPS-PTSDGTSIDQGIAYLLMVVALVLTYLIH 62

BLAST of Bhi06G001729 vs. TAIR10
Match: AT5G24105.1 (arabinogalactan protein 41)

HSP 1 Score: 48.5 bits (114), Expect = 2.0e-06
Identity = 24/34 (70.59%), Postives = 30/34 (88.24%), Query Frame = 0

Query: 39 SPTPAGPSNDGAAIDQGIAYVLLLVALVVTYIIH 73
          +P PA P++DG  IDQGIAYVL+LVALV+TY+IH
Sbjct: 31 APAPA-PTSDGTTIDQGIAYVLMLVALVLTYLIH 63

BLAST of Bhi06G001729 vs. TAIR10
Match: AT2G46330.1 (arabinogalactan protein 16)

HSP 1 Score: 46.6 bits (109), Expect = 7.5e-06
Identity = 22/34 (64.71%), Postives = 31/34 (91.18%), Query Frame = 0

Query: 39 SPTPAGPSNDGAAIDQGIAYVLLLVALVVTYIIH 73
          +P PA P++DG +IDQGIAY+L++VALV+TY+IH
Sbjct: 30 APAPA-PTSDGTSIDQGIAYLLMVVALVLTYLIH 62

BLAST of Bhi06G001729 vs. TAIR10
Match: AT3G61640.1 (arabinogalactan protein 20)

HSP 1 Score: 45.4 bits (106), Expect = 1.7e-05
Identity = 21/34 (61.76%), Postives = 31/34 (91.18%), Query Frame = 0

Query: 39 SPTPAGPSNDGAAIDQGIAYVLLLVALVVTYIIH 73
          +P P+ P++DG +IDQGIAY+L++VALV+TY+IH
Sbjct: 30 APAPS-PTSDGTSIDQGIAYLLMVVALVLTYLIH 62

BLAST of Bhi06G001729 vs. TAIR10
Match: AT5G53250.1 (arabinogalactan protein 22)

HSP 1 Score: 40.0 bits (92), Expect = 7.0e-04
Identity = 18/26 (69.23%), Postives = 23/26 (88.46%), Query Frame = 0

Query: 47 NDGAAIDQGIAYVLLLVALVVTYIIH 73
          +DG +IDQGIAYVL++VAL +TY IH
Sbjct: 38 SDGTSIDQGIAYVLMMVALALTYFIH 63

BLAST of Bhi06G001729 vs. TrEMBL
Match: tr|A0A0A0LIU0|A0A0A0LIU0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004710 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.6e-10
Identity = 42/64 (65.62%), Postives = 46/64 (71.88%), Query Frame = 0

Query: 9  MSSLKLTAVPMVGFIXXXXXXXXXXXXXXXSPTPAGPSNDGAAIDQGIAYVLLLVALVVT 68
          MSSLKLTAVP+VGF+               SP  AGPSNDGAAIDQGIAYVLLL+AL VT
Sbjct: 1  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPA-AGPSNDGAAIDQGIAYVLLLLALAVT 60

Query: 69 YIIH 73
          YI+H
Sbjct: 61 YIVH 63

BLAST of Bhi06G001729 vs. TrEMBL
Match: tr|W9QNZ1|W9QNZ1_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_020814 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.7e-07
Identity = 30/63 (47.62%), Postives = 41/63 (65.08%), Query Frame = 0

Query: 10 SSLKLTAVPMVGFIXXXXXXXXXXXXXXXSPTPAGPSNDGAAIDQGIAYVLLLVALVVTY 69
          +++K  A+P++GFI               SP P GP NDG A+DQG+AYVLLLVAL +TY
Sbjct: 3  TAMKSFALPIIGFILLALMNLSHGQDLAPSPAPQGPVNDGTALDQGVAYVLLLVALAITY 62

Query: 70 IIH 73
          ++H
Sbjct: 63 LVH 65

BLAST of Bhi06G001729 vs. TrEMBL
Match: tr|A0A2P2N249|A0A2P2N249_RHIMU (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.7e-07
Identity = 33/64 (51.56%), Postives = 40/64 (62.50%), Query Frame = 0

Query: 9  MSSLKLTAVPMVGFIXXXXXXXXXXXXXXXSPTPAGPSNDGAAIDQGIAYVLLLVALVVT 68
          M S KL A+P++ FI               SP P GPSNDG  IDQGIAYVL+L+AL VT
Sbjct: 1  MGSAKLVALPIICFIFLAISQLGYGQVMAPSPAPEGPSNDGYTIDQGIAYVLMLLALAVT 60

Query: 69 YIIH 73
          Y++H
Sbjct: 61 YLLH 64

BLAST of Bhi06G001729 vs. TrEMBL
Match: tr|A0A2C9W3S5|A0A2C9W3S5_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G019400 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.7e-07
Identity = 31/64 (48.44%), Postives = 41/64 (64.06%), Query Frame = 0

Query: 9  MSSLKLTAVPMVGFIXXXXXXXXXXXXXXXSPTPAGPSNDGAAIDQGIAYVLLLVALVVT 68
          MS +KL  +P++G +               SP P GPS+DG AIDQGIA++L+LVAL VT
Sbjct: 1  MSPMKLFGLPIIGLVFLALMQLSYGQGVAPSPAPEGPSSDGNAIDQGIAFILMLVALAVT 60

Query: 69 YIIH 73
          Y+IH
Sbjct: 61 YLIH 64

BLAST of Bhi06G001729 vs. TrEMBL
Match: tr|A0A251UME4|A0A251UME4_HELAN (Putative arabinogalactan peptide, AGP OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr05g0138071 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.8e-07
Identity = 31/64 (48.44%), Postives = 44/64 (68.75%), Query Frame = 0

Query: 9  MSSLKLTAVPMVGFIXXXXXXXXXXXXXXXSPTPAGPSNDGAAIDQGIAYVLLLVALVVT 68
          M S++L+ +P++GF+               SPTP  PSNDGAAIDQGIAY+LL++AL +T
Sbjct: 1  MDSMRLSVLPILGFMLVVILQVSKAQTFAPSPTPV-PSNDGAAIDQGIAYLLLVLALAIT 60

Query: 69 YIIH 73
          Y++H
Sbjct: 61 YLVH 63

BLAST of Bhi06G001729 vs. NCBI nr
Match: KGN60622.1 (hypothetical protein Csa_2G004710 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 2.4e-10
Identity = 42/64 (65.62%), Postives = 46/64 (71.88%), Query Frame = 0

Query: 9  MSSLKLTAVPMVGFIXXXXXXXXXXXXXXXSPTPAGPSNDGAAIDQGIAYVLLLVALVVT 68
          MSSLKLTAVP+VGF+               SP  AGPSNDGAAIDQGIAYVLLL+AL VT
Sbjct: 1  MSSLKLTAVPIVGFLFLIVLQLAHGHSHDISPA-AGPSNDGAAIDQGIAYVLLLLALAVT 60

Query: 69 YIIH 73
          YI+H
Sbjct: 61 YIVH 63

BLAST of Bhi06G001729 vs. NCBI nr
Match: EXB37028.1 (hypothetical protein L484_020814 [Morus notabilis])

HSP 1 Score: 63.9 bits (154), Expect = 2.5e-07
Identity = 30/63 (47.62%), Postives = 41/63 (65.08%), Query Frame = 0

Query: 10 SSLKLTAVPMVGFIXXXXXXXXXXXXXXXSPTPAGPSNDGAAIDQGIAYVLLLVALVVTY 69
          +++K  A+P++GFI               SP P GP NDG A+DQG+AYVLLLVAL +TY
Sbjct: 3  TAMKSFALPIIGFILLALMNLSHGQDLAPSPAPQGPVNDGTALDQGVAYVLLLVALAITY 62

Query: 70 IIH 73
          ++H
Sbjct: 63 LVH 65

BLAST of Bhi06G001729 vs. NCBI nr
Match: OAY53733.1 (hypothetical protein MANES_03G019400 [Manihot esculenta])

HSP 1 Score: 62.8 bits (151), Expect = 5.6e-07
Identity = 31/64 (48.44%), Postives = 41/64 (64.06%), Query Frame = 0

Query: 9  MSSLKLTAVPMVGFIXXXXXXXXXXXXXXXSPTPAGPSNDGAAIDQGIAYVLLLVALVVT 68
          MS +KL  +P++G +               SP P GPS+DG AIDQGIA++L+LVAL VT
Sbjct: 1  MSPMKLFGLPIIGLVFLALMQLSYGQGVAPSPAPEGPSSDGNAIDQGIAFILMLVALAVT 60

Query: 69 YIIH 73
          Y+IH
Sbjct: 61 YLIH 64

BLAST of Bhi06G001729 vs. NCBI nr
Match: OTG24560.1 (putative arabinogalactan peptide, AGP [Helianthus annuus])

HSP 1 Score: 62.4 bits (150), Expect = 7.3e-07
Identity = 31/64 (48.44%), Postives = 44/64 (68.75%), Query Frame = 0

Query: 9  MSSLKLTAVPMVGFIXXXXXXXXXXXXXXXSPTPAGPSNDGAAIDQGIAYVLLLVALVVT 68
          M S++L+ +P++GF+               SPTP  PSNDGAAIDQGIAY+LL++AL +T
Sbjct: 1  MDSMRLSVLPILGFMLVVILQVSKAQTFAPSPTPV-PSNDGAAIDQGIAYLLLVLALAIT 60

Query: 69 YIIH 73
          Y++H
Sbjct: 61 YLVH 63

BLAST of Bhi06G001729 vs. NCBI nr
Match: KDP33656.1 (hypothetical protein JCGZ_07227 [Jatropha curcas])

HSP 1 Score: 59.7 bits (143), Expect = 4.7e-06
Identity = 31/64 (48.44%), Postives = 39/64 (60.94%), Query Frame = 0

Query: 9  MSSLKLTAVPMVGFIXXXXXXXXXXXXXXXSPTPAGPSNDGAAIDQGIAYVLLLVALVVT 68
          MS + L A+P++GF+               SP   GPS+DG  IDQGIAYVL+LVAL VT
Sbjct: 1  MSPMNLYALPIIGFMFLALLQLGHGQAIAPSPAAEGPSSDGNTIDQGIAYVLMLVALAVT 60

Query: 69 YIIH 73
          Y+ H
Sbjct: 61 YLFH 64

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
sp|Q8L9T8|AGP41_ARATH3.6e-0570.59Arabinogalactan protein 41 OS=Arabidopsis thaliana OX=3702 GN=AGP41 PE=1 SV=1[more]
sp|O82337|AGP16_ARATH1.4e-0464.71Arabinogalactan protein 16 OS=Arabidopsis thaliana OX=3702 GN=AGP16 PE=1 SV=1[more]
sp|Q9M373|AGP20_ARATH3.0e-0461.76Arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=AGP20 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
AT5G24105.12.0e-0670.59arabinogalactan protein 41[more]
AT2G46330.17.5e-0664.71arabinogalactan protein 16[more]
AT3G61640.11.7e-0561.76arabinogalactan protein 20[more]
AT5G53250.17.0e-0469.23arabinogalactan protein 22[more]
Match NameE-valueIdentityDescription
tr|A0A0A0LIU0|A0A0A0LIU0_CUCSA1.6e-1065.63Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004710 PE=4 SV=1[more]
tr|W9QNZ1|W9QNZ1_9ROSA1.7e-0747.62Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_020814 PE=4 SV=1[more]
tr|A0A2P2N249|A0A2P2N249_RHIMU1.7e-0751.56Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
tr|A0A2C9W3S5|A0A2C9W3S5_MANES3.7e-0748.44Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_03G019400 PE=4 SV=... [more]
tr|A0A251UME4|A0A251UME4_HELAN4.8e-0748.44Putative arabinogalactan peptide, AGP OS=Helianthus annuus OX=4232 GN=HannXRQ_Ch... [more]
Match NameE-valueIdentityDescription
KGN60622.12.4e-1065.63hypothetical protein Csa_2G004710 [Cucumis sativus][more]
EXB37028.12.5e-0747.62hypothetical protein L484_020814 [Morus notabilis][more]
OAY53733.15.6e-0748.44hypothetical protein MANES_03G019400 [Manihot esculenta][more]
OTG24560.17.3e-0748.44putative arabinogalactan peptide, AGP [Helianthus annuus][more]
KDP33656.14.7e-0648.44hypothetical protein JCGZ_07227 [Jatropha curcas][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009424AGP16/20/22/41
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0044699 single-organism process
cellular_component GO:0016020 membrane
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Bhi06M001729Bhi06M001729mRNA


Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009424Arabinogalactan protein 16/20/22/41PFAMPF06376AGPcoord: 40..72
e-value: 3.6E-17
score: 61.8
IPR009424Arabinogalactan protein 16/20/22/41PANTHERPTHR33374FAMILY NOT NAMEDcoord: 9..72

The following gene(s) are paralogous to this gene:

None