Csa2G000670 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G000670
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 382117 .. 382679 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGAGAGAAGCGTTGACATTGAAAAGAAGTGGTTGGGGATGACCGATGGCTGTTAAAAAGGCTCGAATGGAGGAAAATGACTTAAAAGAATATTGAAGATTTAGTTACTTTAGAGGCAGAGGCTGATTTTCAGGCGACCGAAGTCCATGAATCTCCCTAGTTGGAATGCTCGGGGTTTGGAGAGCCTTCGAGCATTCAGAGCCGTAAGTGATTTGATCCGTTCCAAAAATTCCAGTATTATGTTTTTCTCGACAAAAAGCGGAGAGGAAGTCGCTAATCAGATCAAGATCATGGGTAATTTTCGTGGTTTCTTTAAGTCAAAATGGTTCCATAAAAAGGCACCTTTAAGAAAGGAACAATACGAAACAAAGAGACGACAGATGCAAACGGTTAATGATTCGAGGATCCTTTTATCTTGAAAAGAACTTTTATTGACTATTCTTCTCCCTTCTTCTTGCCCAAGTTGTGATAATACTGGAGCTGTTAATGAGAGTATCTCCCCAAAAGCTGATGCTATAATGGATTCTATGCTCTTTTCTCCCAATGTGAGCAGTGAGCACTGA

mRNA sequence

ATGAATCTCCCTAGTTGGAATGCTCGGGGTTTGGAGAGCCTTCGAGCATTCAGAGCCGTAAGTGATTTGATCCGTTCCAAAAATTCCAGTATTATGTTTTTCTCGACAAAAAGCGGAGAGGAAGTCGCTAATCAGATCAAGATCATGGAACTTTTATTGACTATTCTTCTCCCTTCTTCTTGCCCAAGTTGTGATAATACTGGAGCTGTTAATGAGAGTATCTCCCCAAAAGCTGATGCTATAATGGATTCTATGCTCTTTTCTCCCAATGTGAGCAGTGAGCACTGA

Coding sequence (CDS)

ATGAATCTCCCTAGTTGGAATGCTCGGGGTTTGGAGAGCCTTCGAGCATTCAGAGCCGTAAGTGATTTGATCCGTTCCAAAAATTCCAGTATTATGTTTTTCTCGACAAAAAGCGGAGAGGAAGTCGCTAATCAGATCAAGATCATGGAACTTTTATTGACTATTCTTCTCCCTTCTTCTTGCCCAAGTTGTGATAATACTGGAGCTGTTAATGAGAGTATCTCCCCAAAAGCTGATGCTATAATGGATTCTATGCTCTTTTCTCCCAATGTGAGCAGTGAGCACTGA

Protein sequence

MNLPSWNARGLESLRAFRAVSDLIRSKNSSIMFFSTKSGEEVANQIKIMELLLTILLPSSCPSCDNTGAVNESISPKADAIMDSMLFSPNVSSEH*
Homology
[Close]
BLAST of Csa2G000670 vs. TrEMBL
Match: A0A0A0LFT0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000670 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 7.2e-45
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1 

Query: 1  MNLPSWNARGLESLRAFRAVSDLIRSKNSSIMFFSTKSGEEVANQIKIMELLLTILLPSS 60
          MNLPSWNARGLESLRAFRAVSDLIRSKNSSIMFFSTKSGEEVANQIKIMELLLTILLPSS
Sbjct: 1  MNLPSWNARGLESLRAFRAVSDLIRSKNSSIMFFSTKSGEEVANQIKIMELLLTILLPSS 60

Query: 61 CPSCDNTGAVNESISPKADAIMDSMLFSPNVSSEH 96
          CPSCDNTGAVNESISPKADAIMDSMLFSPNVSSEH
Sbjct: 61 CPSCDNTGAVNESISPKADAIMDSMLFSPNVSSEH 95

[Close]
BLAST of Csa2G000670 vs. NCBI nr
Match: gi|700205439|gb|KGN60558.1| (hypothetical protein Csa_2G000670 [Cucumis sativus])

HSP 1 Score: 187.6 bits (475), Expect = 1.0e-44
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 1 

Query: 1  MNLPSWNARGLESLRAFRAVSDLIRSKNSSIMFFSTKSGEEVANQIKIMELLLTILLPSS 60
          MNLPSWNARGLESLRAFRAVSDLIRSKNSSIMFFSTKSGEEVANQIKIMELLLTILLPSS
Sbjct: 1  MNLPSWNARGLESLRAFRAVSDLIRSKNSSIMFFSTKSGEEVANQIKIMELLLTILLPSS 60

Query: 61 CPSCDNTGAVNESISPKADAIMDSMLFSPNVSSEH 96
          CPSCDNTGAVNESISPKADAIMDSMLFSPNVSSEH
Sbjct: 61 CPSCDNTGAVNESISPKADAIMDSMLFSPNVSSEH 95

The following BLAST results are available for this feature:
BLAST of Csa2G000670 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LFT0_CUCSA7.2e-45100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000670 PE=4 SV=1[more]
BLAST of Csa2G000670 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205439|gb|KGN60558.1|1.0e-44100.00hypothetical protein Csa_2G000670 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU112867cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G000670.1Csa2G000670.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU112867CU112867transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa2G000670CSPI02G00650Wild cucumber (PI 183967)cpicuB065
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G000670Cucurbita pepo (Zucchini)cpecuB103
Csa2G000670Cucurbita pepo (Zucchini)cpecuB109
Csa2G000670Cucurbita pepo (Zucchini)cpecuB370
Csa2G000670Cucurbita pepo (Zucchini)cpecuB543
Csa2G000670Cucurbita pepo (Zucchini)cpecuB662
Csa2G000670Cucurbita pepo (Zucchini)cpecuB817
Csa2G000670Cucurbita pepo (Zucchini)cpecuB821
Csa2G000670Bottle gourd (USVL1VR-Ls)culsiB098
Csa2G000670Bottle gourd (USVL1VR-Ls)culsiB134
Csa2G000670Bottle gourd (USVL1VR-Ls)culsiB139
Csa2G000670Cucumber (Gy14) v2cgybcuB019
Csa2G000670Cucumber (Gy14) v2cgybcuB056
Csa2G000670Melon (DHL92) v3.6.1cumedB106
Csa2G000670Melon (DHL92) v3.6.1cumedB133
Csa2G000670Silver-seed gourdcarcuB0042
Csa2G000670Silver-seed gourdcarcuB0102
Csa2G000670Silver-seed gourdcarcuB0217
Csa2G000670Silver-seed gourdcarcuB0598
Csa2G000670Silver-seed gourdcarcuB0911
Csa2G000670Silver-seed gourdcarcuB0914
Csa2G000670Watermelon (97103) v2cuwmbB103
Csa2G000670Watermelon (97103) v2cuwmbB130
Csa2G000670Watermelon (97103) v2cuwmbB156
Csa2G000670Wax gourdcuwgoB129
Csa2G000670Wax gourdcuwgoB144
Csa2G000670Wax gourdcuwgoB211
Csa2G000670Cucumber (Chinese Long) v2cucuB010
Csa2G000670Cucumber (Gy14) v1cgycuB150
Csa2G000670Cucumber (Gy14) v1cgycuB415
Csa2G000670Cucurbita maxima (Rimu)cmacuB075
Csa2G000670Cucurbita maxima (Rimu)cmacuB119
Csa2G000670Cucurbita maxima (Rimu)cmacuB169
Csa2G000670Cucurbita maxima (Rimu)cmacuB173
Csa2G000670Cucurbita maxima (Rimu)cmacuB791
Csa2G000670Cucurbita moschata (Rifu)cmocuB065
Csa2G000670Cucurbita moschata (Rifu)cmocuB105
Csa2G000670Cucurbita moschata (Rifu)cmocuB155
Csa2G000670Cucurbita moschata (Rifu)cmocuB157
Csa2G000670Cucurbita moschata (Rifu)cmocuB783
Csa2G000670Melon (DHL92) v3.5.1cumeB110
Csa2G000670Melon (DHL92) v3.5.1cumeB129
Csa2G000670Melon (DHL92) v3.5.1cumeB140
Csa2G000670Watermelon (Charleston Gray)cuwcgB096
Csa2G000670Watermelon (Charleston Gray)cuwcgB134
Csa2G000670Watermelon (Charleston Gray)cuwcgB163
Csa2G000670Watermelon (97103) v1cuwmB114
Csa2G000670Watermelon (97103) v1cuwmB119
Csa2G000670Watermelon (97103) v1cuwmB162