Csa2G000060 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G000060
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 59677 .. 60002 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGGTTGCCTGCTCCTAAGTTTTAACTGCTGCCAGCTTTCGATTCCTTTTTGTAAAGGAAGCACATTGGAATGGCAAGGTTTCAAAAAAGAGGAAAACGGAAGTGAAAAGTGAGGAAGAAGGAAGGACCGAACGAGAAAGAAAGGAAGAAACCCACGGAGCTTACCAATGGCAACGATGTGAGGGCGGCGTCGGTGCGGCTGCGGACGTGAGCGCCCCAGTAAGAAGACAGTGGCGAGGGCAGATGGAGCGGGCGCGGCAGGAAGTGGACGGTGGGAGAAGGCGAGACAGAAAAATGAAAAAGAGGGAAAATTACACGAAATAA

mRNA sequence

ATGCGCTTTCGATTCCTTTTTGTAAAGGAAGCACATTGGAATGGCAAGGTTTCAAAAAAGAGGAAAACGGAAGTGAAAAGTGAGGAAGAAGGAAGGACCGAACGAGAAAGAAAGGAAGAAACCCACGGAGCTTACCAATGGCAACGATGTGAGGGCGGCGTCGGTGCGGCTGCGGACGTGAGCGCCCCAGTAAGAAGACAGTGGCGAGGGCAGATGGAGCGGGCGCGGCAGGAAGTGGACGGTGGGAGAAGGCGAGACAGAAAAATGAAAAAGAGGGAAAATTACACGAAATAA

Coding sequence (CDS)

ATGCGCTTTCGATTCCTTTTTGTAAAGGAAGCACATTGGAATGGCAAGGTTTCAAAAAAGAGGAAAACGGAAGTGAAAAGTGAGGAAGAAGGAAGGACCGAACGAGAAAGAAAGGAAGAAACCCACGGAGCTTACCAATGGCAACGATGTGAGGGCGGCGTCGGTGCGGCTGCGGACGTGAGCGCCCCAGTAAGAAGACAGTGGCGAGGGCAGATGGAGCGGGCGCGGCAGGAAGTGGACGGTGGGAGAAGGCGAGACAGAAAAATGAAAAAGAGGGAAAATTACACGAAATAA

Protein sequence

MRFRFLFVKEAHWNGKVSKKRKTEVKSEEEGRTERERKEETHGAYQWQRCEGGVGAAADVSAPVRRQWRGQMERARQEVDGGRRRDRKMKKRENYTK*
Homology
[Close]
BLAST of Csa2G000060 vs. TrEMBL
Match: A0A0A0LIK4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000060 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 7.6e-50
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 

Query: 1  MRFRFLFVKEAHWNGKVSKKRKTEVKSEEEGRTERERKEETHGAYQWQRCEGGVGAAADV 60
          MRFRFLFVKEAHWNGKVSKKRKTEVKSEEEGRTERERKEETHGAYQWQRCEGGVGAAADV
Sbjct: 1  MRFRFLFVKEAHWNGKVSKKRKTEVKSEEEGRTERERKEETHGAYQWQRCEGGVGAAADV 60

Query: 61 SAPVRRQWRGQMERARQEVDGGRRRDRKMKKRENYTK 98
          SAPVRRQWRGQMERARQEVDGGRRRDRKMKKRENYTK
Sbjct: 61 SAPVRRQWRGQMERARQEVDGGRRRDRKMKKRENYTK 97

[Close]
BLAST of Csa2G000060 vs. NCBI nr
Match: gi|700205378|gb|KGN60497.1| (hypothetical protein Csa_2G000060 [Cucumis sativus])

HSP 1 Score: 204.1 bits (518), Expect = 1.1e-49
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 

Query: 1  MRFRFLFVKEAHWNGKVSKKRKTEVKSEEEGRTERERKEETHGAYQWQRCEGGVGAAADV 60
          MRFRFLFVKEAHWNGKVSKKRKTEVKSEEEGRTERERKEETHGAYQWQRCEGGVGAAADV
Sbjct: 1  MRFRFLFVKEAHWNGKVSKKRKTEVKSEEEGRTERERKEETHGAYQWQRCEGGVGAAADV 60

Query: 61 SAPVRRQWRGQMERARQEVDGGRRRDRKMKKRENYTK 98
          SAPVRRQWRGQMERARQEVDGGRRRDRKMKKRENYTK
Sbjct: 61 SAPVRRQWRGQMERARQEVDGGRRRDRKMKKRENYTK 97

The following BLAST results are available for this feature:
BLAST of Csa2G000060 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LIK4_CUCSA7.6e-50100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000060 PE=4 SV=1[more]
BLAST of Csa2G000060 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205378|gb|KGN60497.1|1.1e-49100.00hypothetical protein Csa_2G000060 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G000060.1Csa2G000060.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa2G000060CsGy2G000050Cucumber (Gy14) v2cgybcuB056
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G000060Melon (DHL92) v3.5.1cumeB140
Csa2G000060Watermelon (Charleston Gray)cuwcgB096
Csa2G000060Watermelon (97103) v1cuwmB162
Csa2G000060Cucurbita pepo (Zucchini)cpecuB103
Csa2G000060Cucurbita pepo (Zucchini)cpecuB130
Csa2G000060Cucurbita pepo (Zucchini)cpecuB543
Csa2G000060Bottle gourd (USVL1VR-Ls)culsiB098
Csa2G000060Melon (DHL92) v3.6.1cumedB133
Csa2G000060Silver-seed gourdcarcuB0598
Csa2G000060Watermelon (97103) v2cuwmbB103
Csa2G000060Wax gourdcuwgoB129
Csa2G000060Cucumber (Gy14) v1cgycuB150
Csa2G000060Cucurbita maxima (Rimu)cmacuB791
Csa2G000060Cucurbita moschata (Rifu)cmocuB783