Csa2G000060 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G000060
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 59677 .. 60002 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGGTTGCCTGCTCCTAAGTTTTAACTGCTGCCAGCTTTCGATTCCTTTTTGTAAAGGAAGCACATTGGAATGGCAAGGTTTCAAAAAAGAGGAAAACGGAAGTGAAAAGTGAGGAAGAAGGAAGGACCGAACGAGAAAGAAAGGAAGAAACCCACGGAGCTTACCAATGGCAACGATGTGAGGGCGGCGTCGGTGCGGCTGCGGACGTGAGCGCCCCAGTAAGAAGACAGTGGCGAGGGCAGATGGAGCGGGCGCGGCAGGAAGTGGACGGTGGGAGAAGGCGAGACAGAAAAATGAAAAAGAGGGAAAATTACACGAAATAA

mRNA sequence

ATGCGCTTTCGATTCCTTTTTGTAAAGGAAGCACATTGGAATGGCAAGGTTTCAAAAAAGAGGAAAACGGAAGTGAAAAGTGAGGAAGAAGGAAGGACCGAACGAGAAAGAAAGGAAGAAACCCACGGAGCTTACCAATGGCAACGATGTGAGGGCGGCGTCGGTGCGGCTGCGGACGTGAGCGCCCCAGTAAGAAGACAGTGGCGAGGGCAGATGGAGCGGGCGCGGCAGGAAGTGGACGGTGGGAGAAGGCGAGACAGAAAAATGAAAAAGAGGGAAAATTACACGAAATAA

Coding sequence (CDS)

ATGCGCTTTCGATTCCTTTTTGTAAAGGAAGCACATTGGAATGGCAAGGTTTCAAAAAAGAGGAAAACGGAAGTGAAAAGTGAGGAAGAAGGAAGGACCGAACGAGAAAGAAAGGAAGAAACCCACGGAGCTTACCAATGGCAACGATGTGAGGGCGGCGTCGGTGCGGCTGCGGACGTGAGCGCCCCAGTAAGAAGACAGTGGCGAGGGCAGATGGAGCGGGCGCGGCAGGAAGTGGACGGTGGGAGAAGGCGAGACAGAAAAATGAAAAAGAGGGAAAATTACACGAAATAA

Protein sequence

MRFRFLFVKEAHWNGKVSKKRKTEVKSEEEGRTERERKEETHGAYQWQRCEGGVGAAADVSAPVRRQWRGQMERARQEVDGGRRRDRKMKKRENYTK*
Homology
[Close]
BLAST of Csa2G000060 vs. TrEMBL
Match: A0A0A0LIK4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000060 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 7.6e-50
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 

Query: 1  MRFRFLFVKEAHWNGKVSKKRKTEVKSEEEGRTERERKEETHGAYQWQRCEGGVGAAADV 60
          MRFRFLFVKEAHWNGKVSKKRKTEVKSEEEGRTERERKEETHGAYQWQRCEGGVGAAADV
Sbjct: 1  MRFRFLFVKEAHWNGKVSKKRKTEVKSEEEGRTERERKEETHGAYQWQRCEGGVGAAADV 60

Query: 61 SAPVRRQWRGQMERARQEVDGGRRRDRKMKKRENYTK 98
          SAPVRRQWRGQMERARQEVDGGRRRDRKMKKRENYTK
Sbjct: 61 SAPVRRQWRGQMERARQEVDGGRRRDRKMKKRENYTK 97

[Close]
BLAST of Csa2G000060 vs. NCBI nr
Match: gi|700205378|gb|KGN60497.1| (hypothetical protein Csa_2G000060 [Cucumis sativus])

HSP 1 Score: 204.1 bits (518), Expect = 1.1e-49
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 

Query: 1  MRFRFLFVKEAHWNGKVSKKRKTEVKSEEEGRTERERKEETHGAYQWQRCEGGVGAAADV 60
          MRFRFLFVKEAHWNGKVSKKRKTEVKSEEEGRTERERKEETHGAYQWQRCEGGVGAAADV
Sbjct: 1  MRFRFLFVKEAHWNGKVSKKRKTEVKSEEEGRTERERKEETHGAYQWQRCEGGVGAAADV 60

Query: 61 SAPVRRQWRGQMERARQEVDGGRRRDRKMKKRENYTK 98
          SAPVRRQWRGQMERARQEVDGGRRRDRKMKKRENYTK
Sbjct: 61 SAPVRRQWRGQMERARQEVDGGRRRDRKMKKRENYTK 97

The following BLAST results are available for this feature:
BLAST of Csa2G000060 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LIK4_CUCSA7.6e-50100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G000060 PE=4 SV=1[more]
BLAST of Csa2G000060 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700205378|gb|KGN60497.1|1.1e-49100.00hypothetical protein Csa_2G000060 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G000060.1Csa2G000060.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa2G000060CsGy2G000050Cucumber (Gy14) v2cgybcuB056
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G000060Cucumber (Gy14) v1cgycuB150
Csa2G000060Cucurbita maxima (Rimu)cmacuB791
Csa2G000060Cucurbita moschata (Rifu)cmocuB783
Csa2G000060Melon (DHL92) v3.5.1cumeB140
Csa2G000060Watermelon (Charleston Gray)cuwcgB096
Csa2G000060Watermelon (97103) v1cuwmB162
Csa2G000060Cucurbita pepo (Zucchini)cpecuB103
Csa2G000060Cucurbita pepo (Zucchini)cpecuB130
Csa2G000060Cucurbita pepo (Zucchini)cpecuB543
Csa2G000060Bottle gourd (USVL1VR-Ls)culsiB098
Csa2G000060Melon (DHL92) v3.6.1cumedB133
Csa2G000060Silver-seed gourdcarcuB0598
Csa2G000060Watermelon (97103) v2cuwmbB103
Csa2G000060Wax gourdcuwgoB129