CsGy2G000050 (gene) Cucumber (Gy14) v2

Overview
NameCsGy2G000050
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr2 : 76158 .. 77896 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGTAAACGGGAGGATTATTGCCTTGAGAGGTAGCTGAGTGGAATGATTGCCAGTGGCCACCAGACGATACTTGATTACTGACAGTGTGCCTCCCCTGAGGTAGTTGTAAATTAGGGAGAAAGATGAAAACCCATATTGCGTTATTACCTTCCTCTCAAGACCCAATCAATCATAGTATTGAAAAGGTATGGAACTTGCATGTCAGGTTCTTCTAGTTCATTTGGCCCACTCCTATCCTAACGATATATGTACATGGTAACAGGAAATCCTCTTCAGTCGGTGGTTGCACAAGGAATCCAGATTTTTGTAGGCTAATTAGAAGTCCTCACTGAAAAAACTAGAATGAGAAGGTTTTGTTTGACCCCTTTAGGGAGGAGGCACTAGTCTCTTGTTTTCTATACTATAGCTATACATATAAATATGTATGTATATATAAAAATAATTGCAGAGAAATTATATAGATAAATAATGGAAAATTATTATAAATGATAAAATTGTTGAAAATATTCACAAATATGGTAAAATATTATAGTCTATTTGTGTCTAAACAGGGATATATTGCTATATTTGTTAATATTTTGGTCTATTTTTTACATTCGAAAAGATCCCACAAATAATTAGGCAAAGGCAAAATTGAGAGTGAAAAAAAAAATATCATTGATGCTACACACCGAAAGTTCCATCAGCCCGCTGAGTCCTACGAGCGGATTTCTGTAAGTGATGGATGATTGGAACCAAATATGCGACAGTTTTGCCTGTGCCTGTGGCAGCATTAACAAGACTACATATCGAAGTTAAGAAAACTAAATATCAAAAGATAGATGACCCTTCAATGCAATTATATGTGATCAAGATAGAGAATCAATGTCCATGTCCAAATAGCCCCTTTTTGTATATGTTTTTCTATAATAGAATATCAGTTTCTTATCATAAATAATTTGATTGATGAGGCACCAACTTTCATTGAGGGGGCAAAAGCCTCAAAGGATACACATGACGCCTGGATAAAATAGCCGGAATTGCTTGAGCCTGTACAAGCGTAGGAACTTCAAATCCCATTTTATCTGTCCAGATGGAAGAAACGTGACACCAAAAGATGCAGACCAATATGAGAATCAATGCAATTAACCGAATACCCTAAATCTTCAACAGCTCTTGAAGTAAAACTCTAGAACGATTAGCATAGCAGAAGGCAGGTAATAAATAGACATTGGAAAAGGAAGAGAATAAAGGCGGCACACAACACACCTCGGAGTTGGTCGCATAGAGTAGAGTCCAGACCGAGGCTGGCGAAAGTACAAGAAGCAAAAACCTCACCCTCTTTAACCATTTTCTTCGTTGTCGTTTTCACCCCTTCGTTGGTATATTTGATGCTGCTACTCATCCCAGGAGCTCAGCGTAACCTGCTATGCGGTTGCCTGCTCCTAAGTTTTAACTGCTGCCAGCTTTCGATTCCTTTTTGTAAAGGAAGCACATTGGAATGGCAAGGTTTCAAAAAAGAGGAAAACGGAAGTGAAAAGTGAGGAAGAAGGAAGGACCGAACGAGAAAGAAAGGAAGAAACCCACGGAGCTTACCAATGGCAACGATGTGAGGGCGGCGTCGGTGCGGCTGCGGACGTGAGCGCCCCAGTAAGAAGACAGTGGCGAGGGCAGATGGAGCGGGCGCGGCAGGAAGTGGACGGTGGGAGAAGGCGAGACAGAAAAATGAAAAAGAGGGAAAATTACACGAAATAA

mRNA sequence

ATGGAAGTAAACGGGAGGATTATTGCCTTGAGAGCACATTGGAATGGCAAGGTTTCAAAAAAGAGGAAAACGGAAGTGAAAAGTGAGGAAGAAGGAAGGACCGAACGAGAAAGAAAGGAAGAAACCCACGGAGCTTACCAATGGCAACGATGTGAGGGCGGCGTCGGTGCGGCTGCGGACGTGAGCGCCCCAGTAAGAAGACAGTGGCGAGGGCAGATGGAGCGGGCGCGGCAGGAAGTGGACGGTGGGAGAAGGCGAGACAGAAAAATGAAAAAGAGGGAAAATTACACGAAATAA

Coding sequence (CDS)

ATGGAAGTAAACGGGAGGATTATTGCCTTGAGAGCACATTGGAATGGCAAGGTTTCAAAAAAGAGGAAAACGGAAGTGAAAAGTGAGGAAGAAGGAAGGACCGAACGAGAAAGAAAGGAAGAAACCCACGGAGCTTACCAATGGCAACGATGTGAGGGCGGCGTCGGTGCGGCTGCGGACGTGAGCGCCCCAGTAAGAAGACAGTGGCGAGGGCAGATGGAGCGGGCGCGGCAGGAAGTGGACGGTGGGAGAAGGCGAGACAGAAAAATGAAAAAGAGGGAAAATTACACGAAATAA

Protein sequence

MEVNGRIIALRAHWNGKVSKKRKTEVKSEEEGRTERERKEETHGAYQWQRCEGGVGAAADVSAPVRRQWRGQMERARQEVDGGRRRDRKMKKRENYTK
Homology
[Close]
BLAST of CsGy2G000050 vs. NCBI nr
Match: KGN60497.1 (hypothetical protein Csa_2G000060 [Cucumis sativus])

HSP 1 Score: 169.1 bits (427), Expect = 7.5e-39
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 12 AHWNGKVSKKRKTEVKSEEEGRTERERKEETHGAYQWQRCEGGVGAAADVSAPVRRQWRG 71
          AHWNGKVSKKRKTEVKSEEEGRTERERKEETHGAYQWQRCEGGVGAAADVSAPVRRQWRG
Sbjct: 11 AHWNGKVSKKRKTEVKSEEEGRTERERKEETHGAYQWQRCEGGVGAAADVSAPVRRQWRG 70

Query: 72 QMERARQEVDGGRRRDRKMKKRENYTK 99
          QMERARQEVDGGRRRDRKMKKRENYTK
Sbjct: 71 QMERARQEVDGGRRRDRKMKKRENYTK 97

[Close]
BLAST of CsGy2G000050 vs. TrEMBL
Match: tr|A0A0A0LIK4|A0A0A0LIK4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000060 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 5.0e-39
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 12 AHWNGKVSKKRKTEVKSEEEGRTERERKEETHGAYQWQRCEGGVGAAADVSAPVRRQWRG 71
          AHWNGKVSKKRKTEVKSEEEGRTERERKEETHGAYQWQRCEGGVGAAADVSAPVRRQWRG
Sbjct: 11 AHWNGKVSKKRKTEVKSEEEGRTERERKEETHGAYQWQRCEGGVGAAADVSAPVRRQWRG 70

Query: 72 QMERARQEVDGGRRRDRKMKKRENYTK 99
          QMERARQEVDGGRRRDRKMKKRENYTK
Sbjct: 71 QMERARQEVDGGRRRDRKMKKRENYTK 97

The following BLAST results are available for this feature:
BLAST of CsGy2G000050 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN60497.17.5e-39100.00hypothetical protein Csa_2G000060 [Cucumis sativus][more]
BLAST of CsGy2G000050 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy2G000050 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy2G000050 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LIK4|A0A0A0LIK4_CUCSA5.0e-39100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000060 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy2G000050.1CsGy2G000050.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 70..98
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 69..98

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy2G000050Csa2G000060Cucumber (Chinese Long) v2cgybcuB056
CsGy2G000050CsaV3_2G001070Cucumber (Chinese Long) v3cgybcucB064
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy2G000050Cucurbita pepo (Zucchini)cgybcpeB168
CsGy2G000050Cucurbita maxima (Rimu)cgybcmaB185
CsGy2G000050Cucurbita maxima (Rimu)cgybcmaB257
CsGy2G000050Cucurbita moschata (Rifu)cgybcmoB178
CsGy2G000050Cucurbita moschata (Rifu)cgybcmoB243
CsGy2G000050Cucurbita pepo (Zucchini)cgybcpeB225
CsGy2G000050Bottle gourd (USVL1VR-Ls)cgyblsiB089
CsGy2G000050Melon (DHL92) v3.5.1cgybmeB121
CsGy2G000050Melon (DHL92) v3.6.1cgybmedB119
CsGy2G000050Watermelon (Charleston Gray)cgybwcgB094
CsGy2G000050Watermelon (97103) v1cgybwmB154
CsGy2G000050Wild cucumber (PI 183967)cgybcpiB056
CsGy2G000050Silver-seed gourdcarcgybB0573
CsGy2G000050Silver-seed gourdcarcgybB0887
CsGy2G000050Watermelon (97103) v2cgybwmbB098
CsGy2G000050Wax gourdcgybwgoB125