Csa1G696480 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G696480
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 27956998 .. 27957321 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGTGTTAACGTTTGGTTGCTTGAGAGTCATATATCTATTGAACAAAGGTTCTGTTAAAAATAGAGGCCAGGAGATGGGTGTTATCTCCTCAGCACACAAAGCTATGATGAACCGACAGTCTTCTATTGTCTCTTCCCCTATCCGAGTGGTTTACTATGGCTATGTCTCGTGGTTTTGTGGCTGTGTCTGTTTTCCTAAAAAGAAAGTCTCACCATTGGTGTATGAATGCCAAAGAGCTTTTACGCAAAGCCCTAGAAGGAAAACAAGTACGCCTGAATCAAAAAGCTGCCCTGCATCCCCATCTTTGATTATTAACTAA

mRNA sequence

ATGTTGGTGTTAACGTTTGGTTGCTTGAGAGTCATATATCTATTGAACAAAGGTTCTGTTAAAAATAGAGGCCAGGAGATGGGTGTTATCTCCTCAGCACACAAAGCTATGATGAACCGACAGTCTTCTATTGTCTCTTCCCCTATCCGAGTGGTTTACTATGGCTATGTCTCGTGGTTTTGTGGCTGTGTCTGTTTTCCTAAAAAGAAAGTCTCACCATTGGTGTATGAATGCCAAAGAGCTTTTACGCAAAGCCCTAGAAGGAAAACAAGTACGCCTGAATCAAAAAGCTGCCCTGCATCCCCATCTTTGATTATTAACTAA

Coding sequence (CDS)

ATGTTGGTGTTAACGTTTGGTTGCTTGAGAGTCATATATCTATTGAACAAAGGTTCTGTTAAAAATAGAGGCCAGGAGATGGGTGTTATCTCCTCAGCACACAAAGCTATGATGAACCGACAGTCTTCTATTGTCTCTTCCCCTATCCGAGTGGTTTACTATGGCTATGTCTCGTGGTTTTGTGGCTGTGTCTGTTTTCCTAAAAAGAAAGTCTCACCATTGGTGTATGAATGCCAAAGAGCTTTTACGCAAAGCCCTAGAAGGAAAACAAGTACGCCTGAATCAAAAAGCTGCCCTGCATCCCCATCTTTGATTATTAACTAA

Protein sequence

MLVLTFGCLRVIYLLNKGSVKNRGQEMGVISSAHKAMMNRQSSIVSSPIRVVYYGYVSWFCGCVCFPKKKVSPLVYECQRAFTQSPRRKTSTPESKSCPASPSLIIN*

Homology

[Close]

BLAST of Csa1G696480 vs. TrEMBL
Match: A0A0A0LY66_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G696480 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 5.1e-55
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1


Query: 1   MLVLTFGCLRVIYLLNKGSVKNRGQEMGVISSAHKAMMNRQSSIVSSPIRVVYYGYVSWF 60
           MLVLTFGCLRVIYLLNKGSVKNRGQEMGVISSAHKAMMNRQSSIVSSPIRVVYYGYVSWF
Sbjct: 1   MLVLTFGCLRVIYLLNKGSVKNRGQEMGVISSAHKAMMNRQSSIVSSPIRVVYYGYVSWF 60

Query: 61  CGCVCFPKKKVSPLVYECQRAFTQSPRRKTSTPESKSCPASPSLIIN 108
           CGCVCFPKKKVSPLVYECQRAFTQSPRRKTSTPESKSCPASPSLIIN
Sbjct: 61  CGCVCFPKKKVSPLVYECQRAFTQSPRRKTSTPESKSCPASPSLIIN 107

[Close]

BLAST of Csa1G696480 vs. NCBI nr
Match: gi|700211719|gb|KGN66815.1| (hypothetical protein Csa_1G696480 [Cucumis sativus])

HSP 1 Score: 221.5 bits (563), Expect = 7.3e-55
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1


Query: 1   MLVLTFGCLRVIYLLNKGSVKNRGQEMGVISSAHKAMMNRQSSIVSSPIRVVYYGYVSWF 60
           MLVLTFGCLRVIYLLNKGSVKNRGQEMGVISSAHKAMMNRQSSIVSSPIRVVYYGYVSWF
Sbjct: 1   MLVLTFGCLRVIYLLNKGSVKNRGQEMGVISSAHKAMMNRQSSIVSSPIRVVYYGYVSWF 60

Query: 61  CGCVCFPKKKVSPLVYECQRAFTQSPRRKTSTPESKSCPASPSLIIN 108
           CGCVCFPKKKVSPLVYECQRAFTQSPRRKTSTPESKSCPASPSLIIN
Sbjct: 61  CGCVCFPKKKVSPLVYECQRAFTQSPRRKTSTPESKSCPASPSLIIN 107

The following BLAST results are available for this feature:

BLAST of Csa1G696480 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY66_CUCSA	5.1e-55	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G696480 PE=4 SV=1	[more]

BLAST of Csa1G696480 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700211719\|gb\|KGN66815.1\|	7.3e-55	100.00	hypothetical protein Csa_1G696480 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G696480.1	Csa1G696480.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G696480	CSPI01G33880	Wild cucumber (PI 183967)	cpicuB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G696480	Cucurbita moschata (Rifu)	cmocuB084
Csa1G696480	Melon (DHL92) v3.5.1	cumeB045
Csa1G696480	Watermelon (Charleston Gray)	cuwcgB077
Csa1G696480	Watermelon (Charleston Gray)	cuwcgB085
Csa1G696480	Watermelon (97103) v1	cuwmB089
Csa1G696480	Cucurbita pepo (Zucchini)	cpecuB660
Csa1G696480	Bottle gourd (USVL1VR-Ls)	culsiB080
Csa1G696480	Cucumber (Gy14) v2	cgybcuB002
Csa1G696480	Melon (DHL92) v3.6.1	cumedB037
Csa1G696480	Silver-seed gourd	carcuB0036
Csa1G696480	Watermelon (97103) v2	cuwmbB075
Csa1G696480	Watermelon (97103) v2	cuwmbB082
Csa1G696480	Wax gourd	cuwgoB116
Csa1G696480	Cucumber (Gy14) v1	cgycuB470