CSPI01G33880 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G33880
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 28824370 .. 28824690 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGTGTTAACGTTTGGTTGCTTGAGAGTCGTATATCTATTGAACAAAGGTTCTGTTAAAAATAGAGGCGAGGAGATGGGTGTTATCTCCTCAGCACACAAAGCTATGATGAACCGACAGTCTTCTATTGTCTCTTCCCCTATCCGAGTGGTTTACTATGGCTATGTCTCGTGGTTTTGTGGCTGTGTCTGTTTTCCTAAAAAGAAAGTCTCACCATTGGTGTATGAATGCCAAAGAGCTTTTACACAAAGCCCTAGAAGGAAAACAAGTACGCCTGAATCAAAAAGCTGCCCTGCATCCCCATCTTTGATTATTAAC

mRNA sequence

ATGTTGGTGTTAACGTTTGGTTGCTTGAGAGTCGTATATCTATTGAACAAAGGTTCTGTTAAAAATAGAGGCGAGGAGATGGGTGTTATCTCCTCAGCACACAAAGCTATGATGAACCGACAGTCTTCTATTGTCTCTTCCCCTATCCGAGTGGTTTACTATGGCTATGTCTCGTGGTTTTGTGGCTGTGTCTGTTTTCCTAAAAAGAAAGTCTCACCATTGGTGTATGAATGCCAAAGAGCTTTTACACAAAGCCCTAGAAGGAAAACAAGTACGCCTGAATCAAAAAGCTGCCCTGCATCCCCATCTTTGATTATTAAC

Coding sequence (CDS)

ATGTTGGTGTTAACGTTTGGTTGCTTGAGAGTCGTATATCTATTGAACAAAGGTTCTGTTAAAAATAGAGGCGAGGAGATGGGTGTTATCTCCTCAGCACACAAAGCTATGATGAACCGACAGTCTTCTATTGTCTCTTCCCCTATCCGAGTGGTTTACTATGGCTATGTCTCGTGGTTTTGTGGCTGTGTCTGTTTTCCTAAAAAGAAAGTCTCACCATTGGTGTATGAATGCCAAAGAGCTTTTACACAAAGCCCTAGAAGGAAAACAAGTACGCCTGAATCAAAAAGCTGCCCTGCATCCCCATCTTTGATTATTAAC
Homology
[Close]
BLAST of CSPI01G33880 vs. TrEMBL
Match: A0A0A0LY66_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G696480 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 2.7e-53
Identity = 105/107 (98.13%), Postives = 107/107 (100.00%), Query Frame = 1 

Query: 1   MLVLTFGCLRVVYLLNKGSVKNRGEEMGVISSAHKAMMNRQSSIVSSPIRVVYYGYVSWF 60
           MLVLTFGCLRV+YLLNKGSVKNRG+EMGVISSAHKAMMNRQSSIVSSPIRVVYYGYVSWF
Sbjct: 1   MLVLTFGCLRVIYLLNKGSVKNRGQEMGVISSAHKAMMNRQSSIVSSPIRVVYYGYVSWF 60

Query: 61  CGCVCFPKKKVSPLVYECQRAFTQSPRRKTSTPESKSCPASPSLIIN 108
           CGCVCFPKKKVSPLVYECQRAFTQSPRRKTSTPESKSCPASPSLIIN
Sbjct: 61  CGCVCFPKKKVSPLVYECQRAFTQSPRRKTSTPESKSCPASPSLIIN 107

[Close]
BLAST of CSPI01G33880 vs. NCBI nr
Match: gi|700211719|gb|KGN66815.1| (hypothetical protein Csa_1G696480 [Cucumis sativus])

HSP 1 Score: 215.7 bits (548), Expect = 3.9e-53
Identity = 105/107 (98.13%), Postives = 107/107 (100.00%), Query Frame = 1 

Query: 1   MLVLTFGCLRVVYLLNKGSVKNRGEEMGVISSAHKAMMNRQSSIVSSPIRVVYYGYVSWF 60
           MLVLTFGCLRV+YLLNKGSVKNRG+EMGVISSAHKAMMNRQSSIVSSPIRVVYYGYVSWF
Sbjct: 1   MLVLTFGCLRVIYLLNKGSVKNRGQEMGVISSAHKAMMNRQSSIVSSPIRVVYYGYVSWF 60

Query: 61  CGCVCFPKKKVSPLVYECQRAFTQSPRRKTSTPESKSCPASPSLIIN 108
           CGCVCFPKKKVSPLVYECQRAFTQSPRRKTSTPESKSCPASPSLIIN
Sbjct: 61  CGCVCFPKKKVSPLVYECQRAFTQSPRRKTSTPESKSCPASPSLIIN 107

The following BLAST results are available for this feature:
BLAST of CSPI01G33880 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G33880 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LY66_CUCSA2.7e-5398.13Uncharacterized protein OS=Cucumis sativus GN=Csa_1G696480 PE=4 SV=1[more]
BLAST of CSPI01G33880 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G33880 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211719|gb|KGN66815.1|3.9e-5398.13hypothetical protein Csa_1G696480 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G33880.1CSPI01G33880.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G33880Csa1G696480Cucumber (Chinese Long) v2cpicuB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G33880Melon (DHL92) v3.5.1cpimeB045
CSPI01G33880Watermelon (Charleston Gray)cpiwcgB078
CSPI01G33880Watermelon (Charleston Gray)cpiwcgB087
CSPI01G33880Watermelon (97103) v1cpiwmB095
CSPI01G33880Cucurbita pepo (Zucchini)cpecpiB662
CSPI01G33880Bottle gourd (USVL1VR-Ls)cpilsiB079
CSPI01G33880Melon (DHL92) v3.6.1cpimedB039
CSPI01G33880Cucumber (Gy14) v2cgybcpiB002
CSPI01G33880Silver-seed gourdcarcpiB0038
CSPI01G33880Cucumber (Chinese Long) v3cpicucB000
CSPI01G33880Watermelon (97103) v2cpiwmbB076
CSPI01G33880Watermelon (97103) v2cpiwmbB083
CSPI01G33880Wax gourdcpiwgoB117
CSPI01G33880Cucumber (Gy14) v1cgycpiB496
CSPI01G33880Cucurbita moschata (Rifu)cmocpiB089