CSPI01G33880 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G33880
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 28824370 .. 28824690 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGTGTTAACGTTTGGTTGCTTGAGAGTCGTATATCTATTGAACAAAGGTTCTGTTAAAAATAGAGGCGAGGAGATGGGTGTTATCTCCTCAGCACACAAAGCTATGATGAACCGACAGTCTTCTATTGTCTCTTCCCCTATCCGAGTGGTTTACTATGGCTATGTCTCGTGGTTTTGTGGCTGTGTCTGTTTTCCTAAAAAGAAAGTCTCACCATTGGTGTATGAATGCCAAAGAGCTTTTACACAAAGCCCTAGAAGGAAAACAAGTACGCCTGAATCAAAAAGCTGCCCTGCATCCCCATCTTTGATTATTAAC

mRNA sequence

ATGTTGGTGTTAACGTTTGGTTGCTTGAGAGTCGTATATCTATTGAACAAAGGTTCTGTTAAAAATAGAGGCGAGGAGATGGGTGTTATCTCCTCAGCACACAAAGCTATGATGAACCGACAGTCTTCTATTGTCTCTTCCCCTATCCGAGTGGTTTACTATGGCTATGTCTCGTGGTTTTGTGGCTGTGTCTGTTTTCCTAAAAAGAAAGTCTCACCATTGGTGTATGAATGCCAAAGAGCTTTTACACAAAGCCCTAGAAGGAAAACAAGTACGCCTGAATCAAAAAGCTGCCCTGCATCCCCATCTTTGATTATTAAC

Coding sequence (CDS)

ATGTTGGTGTTAACGTTTGGTTGCTTGAGAGTCGTATATCTATTGAACAAAGGTTCTGTTAAAAATAGAGGCGAGGAGATGGGTGTTATCTCCTCAGCACACAAAGCTATGATGAACCGACAGTCTTCTATTGTCTCTTCCCCTATCCGAGTGGTTTACTATGGCTATGTCTCGTGGTTTTGTGGCTGTGTCTGTTTTCCTAAAAAGAAAGTCTCACCATTGGTGTATGAATGCCAAAGAGCTTTTACACAAAGCCCTAGAAGGAAAACAAGTACGCCTGAATCAAAAAGCTGCCCTGCATCCCCATCTTTGATTATTAAC
Homology
[Close]
BLAST of CSPI01G33880 vs. TrEMBL
Match: A0A0A0LY66_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G696480 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 2.7e-53
Identity = 105/107 (98.13%), Postives = 107/107 (100.00%), Query Frame = 1 

Query: 1   MLVLTFGCLRVVYLLNKGSVKNRGEEMGVISSAHKAMMNRQSSIVSSPIRVVYYGYVSWF 60
           MLVLTFGCLRV+YLLNKGSVKNRG+EMGVISSAHKAMMNRQSSIVSSPIRVVYYGYVSWF
Sbjct: 1   MLVLTFGCLRVIYLLNKGSVKNRGQEMGVISSAHKAMMNRQSSIVSSPIRVVYYGYVSWF 60

Query: 61  CGCVCFPKKKVSPLVYECQRAFTQSPRRKTSTPESKSCPASPSLIIN 108
           CGCVCFPKKKVSPLVYECQRAFTQSPRRKTSTPESKSCPASPSLIIN
Sbjct: 61  CGCVCFPKKKVSPLVYECQRAFTQSPRRKTSTPESKSCPASPSLIIN 107

[Close]
BLAST of CSPI01G33880 vs. NCBI nr
Match: gi|700211719|gb|KGN66815.1| (hypothetical protein Csa_1G696480 [Cucumis sativus])

HSP 1 Score: 215.7 bits (548), Expect = 3.9e-53
Identity = 105/107 (98.13%), Postives = 107/107 (100.00%), Query Frame = 1 

Query: 1   MLVLTFGCLRVVYLLNKGSVKNRGEEMGVISSAHKAMMNRQSSIVSSPIRVVYYGYVSWF 60
           MLVLTFGCLRV+YLLNKGSVKNRG+EMGVISSAHKAMMNRQSSIVSSPIRVVYYGYVSWF
Sbjct: 1   MLVLTFGCLRVIYLLNKGSVKNRGQEMGVISSAHKAMMNRQSSIVSSPIRVVYYGYVSWF 60

Query: 61  CGCVCFPKKKVSPLVYECQRAFTQSPRRKTSTPESKSCPASPSLIIN 108
           CGCVCFPKKKVSPLVYECQRAFTQSPRRKTSTPESKSCPASPSLIIN
Sbjct: 61  CGCVCFPKKKVSPLVYECQRAFTQSPRRKTSTPESKSCPASPSLIIN 107

The following BLAST results are available for this feature:
BLAST of CSPI01G33880 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G33880 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LY66_CUCSA2.7e-5398.13Uncharacterized protein OS=Cucumis sativus GN=Csa_1G696480 PE=4 SV=1[more]
BLAST of CSPI01G33880 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G33880 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211719|gb|KGN66815.1|3.9e-5398.13hypothetical protein Csa_1G696480 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G33880.1CSPI01G33880.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G33880Csa1G696480Cucumber (Chinese Long) v2cpicuB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G33880Silver-seed gourdcarcpiB0038
CSPI01G33880Cucumber (Chinese Long) v3cpicucB000
CSPI01G33880Watermelon (97103) v2cpiwmbB076
CSPI01G33880Watermelon (97103) v2cpiwmbB083
CSPI01G33880Wax gourdcpiwgoB117
CSPI01G33880Cucumber (Gy14) v1cgycpiB496
CSPI01G33880Cucurbita moschata (Rifu)cmocpiB089
CSPI01G33880Melon (DHL92) v3.5.1cpimeB045
CSPI01G33880Watermelon (Charleston Gray)cpiwcgB078
CSPI01G33880Watermelon (Charleston Gray)cpiwcgB087
CSPI01G33880Watermelon (97103) v1cpiwmB095
CSPI01G33880Cucurbita pepo (Zucchini)cpecpiB662
CSPI01G33880Bottle gourd (USVL1VR-Ls)cpilsiB079
CSPI01G33880Melon (DHL92) v3.6.1cpimedB039
CSPI01G33880Cucumber (Gy14) v2cgybcpiB002