Csa1G690360 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G690360
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 27804052 .. 27805153 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATACTGTACTATGGCTACATTGTAATGAGATCCAACACAGGCAAGATAATTACGAAGGCTTCAGAGTCAGTTACACATAAGAAGAGATTAATCAAACACCAATTTAAAGTCTCCCAAAGTCTCCCATTGAACCAGGGCATCAATAACTATAAGAGGCAAATCAACAAAATGAATAACAATTACAAATAACAAGAGCGAGCATTTGCAACCCAAAAGTGTATTATTCACTAATCCATGAATAATAAACTAACTGTATAACAATATGAAGAAATAATAATCAAAGAAACCAAATACTTTACCGTGCAAATCCTCCCTCTAGTTAGTACAAATTTGCATAACTTGTTATGCCAATTCTATATCGGCACATATCTCTTAACTGCCTGCTTACCCGCAACTGCAGCTGCAGCAGCAATTCCTCCAATAGCACCGGCGATGGCAGCCGACCTTGGCCCAGACGCCGCCTTATAAACAGCACCAGTCCCCAATCCAGCTACAATACTGTTTAAAACATCATCAGAACCTCTCAAATGAATAACCCCACTTTCCAAACCAGCAAAAATCAAGCCAAGGATCCCAAGAGAGTTTCCAGCCCTCCGGCCAAGCTGGCCCCCAGAGTTGAGAACTCGATTGAGACGGAGTTTGACAGAGTCACCAGGCTCAGCTGCCCTGAGGCCCTGAATGGAACCCCTGGCGCCGCCAAAAAGGGCGCCGGAGAGGTAGCCAATTCCGGTGTAATATTGGAGGTTTTCGCCCCAAGAACGGTGAGGCCTGGCGGCTTCTTCGAAGAAAAGATGCTCGGGGGCGGTGGGGAGCTCGTAGAGCTTGGTGATCGGAACGTGTAGGTCTTGGTAAGGGTGATAGAAGCGGGATTTCCGATCATCGGGTGATTTGGAGGAATTTTCCATGGGAGGAGGAGAAAGGGAGGTTTTGAAGGAACAGAAATTAGGGTTTAGGGTGAGTTGAATCAAAGGTTGGAGAGAGAGAAAACAATGGCGAGAAAGAGAAAGAAATGGTTTCTCTTTCTTTCTTCAAAAAGCTTCAAAGGGTTTGAAAGGGTTTATGGGAGAGGAAGCTTCGTGAGTAGCGTAGGGTTTAACGCGG

mRNA sequence

ATGAATAACCCCACTTTCCAAACCAGCAAAAATCAAGCCAAGGATCCCAAGAGAGTTTCCAGCCCTCCGGCCAAGCTGGCCCCCAGAGTTGAGAACTCGATTGAGACGGAGTTTGACAGAGTCACCAGGCTCAGCTGCCCTGAGGCCCTGAATGGAACCCCTGGCGCCGCCAAAAAGGGCGCCGGAGAGGTAGCCAATTCCGGTGTAATATTGGAGGTTTTCGCCCCAAGAACGGTGAGGCCTGGCGGCTTCTTCGAAGAAAAGATGCTCGGGGGCGGTGGGGAGCTCGTAGAGCTTGGTGATCGGAACGTGTAG

Coding sequence (CDS)

ATGAATAACCCCACTTTCCAAACCAGCAAAAATCAAGCCAAGGATCCCAAGAGAGTTTCCAGCCCTCCGGCCAAGCTGGCCCCCAGAGTTGAGAACTCGATTGAGACGGAGTTTGACAGAGTCACCAGGCTCAGCTGCCCTGAGGCCCTGAATGGAACCCCTGGCGCCGCCAAAAAGGGCGCCGGAGAGGTAGCCAATTCCGGTGTAATATTGGAGGTTTTCGCCCCAAGAACGGTGAGGCCTGGCGGCTTCTTCGAAGAAAAGATGCTCGGGGGCGGTGGGGAGCTCGTAGAGCTTGGTGATCGGAACGTGTAG

Protein sequence

MNNPTFQTSKNQAKDPKRVSSPPAKLAPRVENSIETEFDRVTRLSCPEALNGTPGAAKKGAGEVANSGVILEVFAPRTVRPGGFFEEKMLGGGGELVELGDRNV*
Homology
[Close]
BLAST of Csa1G690360 vs. TrEMBL
Match: A0A0A0LY52_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690360 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 6.6e-52
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1 

Query: 1   MNNPTFQTSKNQAKDPKRVSSPPAKLAPRVENSIETEFDRVTRLSCPEALNGTPGAAKKG 60
           MNNPTFQTSKNQAKDPKRVSSPPAKLAPRVENSIETEFDRVTRLSCPEALNGTPGAAKKG
Sbjct: 1   MNNPTFQTSKNQAKDPKRVSSPPAKLAPRVENSIETEFDRVTRLSCPEALNGTPGAAKKG 60

Query: 61  AGEVANSGVILEVFAPRTVRPGGFFEEKMLGGGGELVELGDRNV 105
           AGEVANSGVILEVFAPRTVRPGGFFEEKMLGGGGELVELGDRNV
Sbjct: 61  AGEVANSGVILEVFAPRTVRPGGFFEEKMLGGGGELVELGDRNV 104

[Close]
BLAST of Csa1G690360 vs. NCBI nr
Match: gi|700211704|gb|KGN66800.1| (hypothetical protein Csa_1G690360 [Cucumis sativus])

HSP 1 Score: 211.1 bits (536), Expect = 9.5e-52
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1 

Query: 1   MNNPTFQTSKNQAKDPKRVSSPPAKLAPRVENSIETEFDRVTRLSCPEALNGTPGAAKKG 60
           MNNPTFQTSKNQAKDPKRVSSPPAKLAPRVENSIETEFDRVTRLSCPEALNGTPGAAKKG
Sbjct: 1   MNNPTFQTSKNQAKDPKRVSSPPAKLAPRVENSIETEFDRVTRLSCPEALNGTPGAAKKG 60

Query: 61  AGEVANSGVILEVFAPRTVRPGGFFEEKMLGGGGELVELGDRNV 105
           AGEVANSGVILEVFAPRTVRPGGFFEEKMLGGGGELVELGDRNV
Sbjct: 61  AGEVANSGVILEVFAPRTVRPGGFFEEKMLGGGGELVELGDRNV 104

The following BLAST results are available for this feature:
BLAST of Csa1G690360 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LY52_CUCSA6.6e-52100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G690360 PE=4 SV=1[more]
BLAST of Csa1G690360 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211704|gb|KGN66800.1|9.5e-52100.00hypothetical protein Csa_1G690360 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU096495cucumber EST collection version 3.0transcribed_cluster
CU106450cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G690360.1Csa1G690360.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU106450CU106450transcribed_cluster
CU096495CU096495transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G690360Carg06120Silver-seed gourdcarcuB0016
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G690360Melon (DHL92) v3.5.1cumeB045
Csa1G690360Watermelon (Charleston Gray)cuwcgB077
Csa1G690360Watermelon (Charleston Gray)cuwcgB085
Csa1G690360Watermelon (97103) v1cuwmB090
Csa1G690360Cucurbita pepo (Zucchini)cpecuB639
Csa1G690360Cucurbita pepo (Zucchini)cpecuB701
Csa1G690360Bottle gourd (USVL1VR-Ls)culsiB058
Csa1G690360Bottle gourd (USVL1VR-Ls)culsiB080
Csa1G690360Cucumber (Gy14) v2cgybcuB002
Csa1G690360Melon (DHL92) v3.6.1cumedB037
Csa1G690360Silver-seed gourdcarcuB0927
Csa1G690360Watermelon (97103) v2cuwmbB075
Csa1G690360Watermelon (97103) v2cuwmbB082
Csa1G690360Wax gourdcuwgoB113
Csa1G690360Cucumber (Gy14) v1cgycuB417
Csa1G690360Cucurbita maxima (Rimu)cmacuB064
Csa1G690360Cucurbita maxima (Rimu)cmacuB085
Csa1G690360Cucurbita moschata (Rifu)cmocuB075
Csa1G690360Cucurbita moschata (Rifu)cmocuB054