Carg06120 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg06120
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_026 : 1162690 .. 1168535 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGTATTATTCATTTTCGATAAACATTTTCAAAAAATCAACCCAAAACGGATAAGATTTTTCCATCCTTGCCCATCTCGAGAAACCCTGATGGGGTGGCACCATCCAGGACTCCAGGAGCGTCGTACATCAATACCCTTCACCGTTTCACCACTCCCAAATCCACCAATAGAGCTTATTCGATTACAGTCATGGCCACGCCAATCCATAGCCGAATCAGATGTTGGCTTACGGTGTTAAGTATCTTCCGAATTGATAGCAAAATCTGAACGAACAATAACAGAGGGTACCAATGGCAGGCTACGGTACAAGCGAGAGCTATGCTTCTGAAATTGAATTGTTTATATCGCTTGCTGGTGATTCTGATGCTGGGATTTTGGAAGCTTTTCTTAACCCGATGAACGGTTAGCTCTAAGACTTTGCTTGTTCATGTATTTGTACCTTTTTTTAAGACTTTTCTTCTTTTAGCTGATCTATATATTATTGGTTTAGTTTTTGGCCAAAACTGACCCTTGTTGGATATATGTGTGTATATATATTCTATGCTCTAAGTTTTTTTTGACTTGAGTTTCTTGTTATTGATACTGATAAGGATCAGGGTGTTCTATAAGTTTGAACTAGTCCTATTACACGATCCAAAACTAAGAAGATTCAAGAAACATTAGTACTTCACCTTTAAAATTAGATAGGCTTGGTTCAAATCCCACTTCATGTGCTGCAAACTATTCCAAAGGTTTGGACCACTTAAAGCTTTGAAGGTTAATGTGTTCCAGATTGAAGTTGACCATGGAGTTACTGTTAAATTCACTTGAAATGACATGTTCTTTGAAGAGTTCAATTAGTGTAAGGGAGATTATGGATAAAGGAAATTGTCTCTCGAGGCTGAGATATTTTTCTAGATATCTCTAAGTTCCCTTGTTATTCTTGCGATAGTTTGCATTCGAGCCATTCAATCCAACCTAAATCAAGTTAGATTGTGGAATGACTCAATCTAGAACAAGAAATACATCCATGGACTTCTCCAACAAATCTGTGAAGATTGTCTGAAATGTTCTTGGTGTGTTGGGAAGGTCGAACAACATTCTTTTGGATGTATGTGTCCTATACGGGCATGTGAAGGTTGTCTTCTCCTAGGCCTCTGGCACAGTAATGATTTGGTTGTATCTAGAATATCCATCCGTAAAGCAATGGCAAACTTTCCTCGTCAAGCGATTCAACATTTGGTCGATGAAAAGGAGGGGGAAATGGTCTTTCTTGGTTGCCACACTTAGCTTGCAGGAGTCCATACACCAGTCAGTGACTGTGGGAGTAGGAATTAGTTCATTCTTAGTGTTGGCTACTACCGTCTTGCTTCCTTTCTTGGGGAAGCATTGAATTCAACTCACACAGTTGCTGTCAGAAATAGGGTAGATCATCTCTGTGTCTACCTGCACGTTAAACGCTGATGTTGCGCTACATTCTTTCACAAGATGACACAAATCTGTATTCATCACAAAAGCCTCCCTTTCATGGAGGGGTGAGTGAAGAAGAAATTCTTCAATTGCCTCTCTCCAATCCTGAGATTTGACTTGACAAAGCTGGAGCCATACCCCTTGGAGTTTTTTACCTTCCACAATGAGGTAAAGACAGAACCGTTAGATGGGGAGGGAATAATCAAATCATAAGATAAGGAACTGTAGGAAAAGCCTTTGGATGGACCAAGACTCCAAAGACGAACGTCACTTATCTCGGAGCCAGAGCGAAACTCTCCATTTAAAGATAAAAGAGCCAGAATAGCTGTTGGTTTCCACTCAAACAATTCAAATAGGAAAACATAGAGCAAAAGGGTATCCCATCCTATTTTGATAGAATCGTCAACGAACTAAAGATGAGGCAATGCTAACTTATCCTTCCCTACCTCGAAACCCTCATGAATATTACCCTCCATCCCCACCCCGTTTGATACAACTCTGCTGAGAATATCCACAACTAGCAAGAAAAGAAAGGAGACAGCCGGTCACCTTGTCTAAGCTTCTTGTAACACAAATCCTACTCCTCGATTTATTATTAATGAGGTTGGAGTATTCAACTATTCTAAAAGCTATAATCCTCAAAGGCTTCATTGGCAATAAGGGTTTAGTCTAAGATTTGCTTGCTAGCTGAAAGCACCTTGGAAATTTGAATTGTCTTAGGAAGAACCTTTCTCAGCCTGTTAGATAACACCTTGGAAATGATTATATACACGCTGGTATAGATTAATAGGATTAAAATCCCTAAGGCATGAAGCATCAATAAATTATTTAGACGTGAAAAAGAAAAGCATGAATGAATAATAAAATAATGAAAAGTTTTATAAACTAGAGCTTTTGTAAGAGAGCGTTTGGAGAAACGAGCGTTTGAAATATGTTTTTCAATATCTTTATAAAATTTTAAATAAACCAGTGTGTCTCACTTCTTTGAAATGAGGTCCTCTACGAGGGCCTTTTTCAGGAGTGTTCCTAGTCGTGCGTTTCAAAATGATTGTTTTAACTGTTTTTGAGACTCAATGAGGTTTGTCTGGGGAATCGACCAGGAAAAAAGATTCTTATGAAAACTCTAGCCAATTGGATCTAAGAATCCTTGTGGTTATACAAACCCTTAGATCGAAAATGCTAAAAACTCTCAAATCAAGTTGAAATCAAAGATTACAAAGATGCTCTGATACCAAAGGATAAGGTGACCATAATTCTCAGCCTAATGACACGAGCTTTTGTTGAAGCAATAACTCTTGAATCAAACAAATTAGCGCTTATGCAAATTTAAAAAATCAACTCAAGGAAAGTAAGAACCAAATTACCTTGTTAATCAAATATCTCAAGGTAAGGAAACTTGTTTGAGATTCGAATCACTTCACAAGCAATATTAATCCAATCATGTTAATGCTTCTAAGCCATCTTAATTCTTAAGAGTTACATTTTTTGTTCTTAATTCTTTTCTACCCTTAGCATTAGTTCATCTGGTTCAACCCTAGCTTGTTGCCACTCTTGATCACATGCTTAAGCATCTTGTTTGAGTTTTGATTTATTCCTTAAGCCTAGTTTGCTTGTTTGTATTCAAAGAATGCTATTATCCATTGGATTGCAAACAATCTTGGCGAGAGAGGAGAATGAAAGCTTAATTTGTGAAAAAATAAATGAGTGCAAACACGGGTGACCTAAATTTCTTTGAGGGTTGGTATGCATGTGAGAGAGTGTTGTGAGGTTCTTTTTTGGTATTTTTCTTAACTTTGTTTTTGTAGGAAAGTTTGACAAACAAATTTGAGTACGAAACCTCTTGAAAAAGTGGAGAATGATATGAATGAAGACGACTTTATCACGTGTCTAAGATTTCAATAAAATTAAGTTGCATTAAATGCACTCGGACTTCATTCATGACAAACCAAAGTTAAACTGATGTTAGAGTCGAGTAACGTTAAAGTTAAACTCAAGTTGCAATTAATGAACTCAAGTGAAACCAAGATCACATGACAGAAGAATCAAGCTTCATACATACTACAAGAGTTTCAAACCAATTTAAGTGAGACTTCATTTGTTTTTAGATGTTTATAAATTCTTGGGTGGCTGATTGTAATCTCTTATTTTTGGATTTATGGTTTTAAATATATTTTCCACGGATTATAGTCATAAAGTTTTAACACGGTTTCATTTTGAGGCTATATAAAGCCTTATGATTTTTCCTTTTAGCTTAAAGTTAAGTTTCTTTGTAATTCTGTATCGTGAGTTGTCTTCAAATTCATTTAGGAACTCAACATTTGGGAAGTCATATGCACATGGCTCAATGTACTTGCATTGAATATGTAGGCTTTATTGTTTCCTATTTCTGGTGGTTATTTTCTTGAACAATTTTAAAATTTGCTATTATCCAATTATGCTTAGAGTTCGCATTTTAAAGAAATCTTCAATAAACTTGCCCGTTTTTCAGTTTGCAGAGAGCCAACCTGGTGGCTACATTTACTCTGGACAAACTACACAAATCTTTCTAATGAGCAGATCTGCAGTTTCAGTTTCAAACTCATTCTGATCGAGGTATACAAATTCTTCTAATTAGCCGATTTATGATATCAAGTTAACTTTCTACGTTAATTCCCAGAAATTAATGTTTAAATATGAGGAAACGTTATCGAATATCCAAGGGTATGAATCGAATTGAATTAGAATGAGCATACGATGATGATGATACTGATATCTTTTCCCAACTCCGAGCATTGTGTTCATTTTCAGGCAATTTTCAAGTGAATGTGACCCATTTACGTTTATTTCATGTCATACTTAGAAATGTTTTATTTGACCAGCAAGAATAAAGTTTCGGTTTCGGTTTGCCAGTCCGAATATGGTTTAGAAAAAATGACCCCAATTATAATTTCAAAAGTCGATGGTTCAATCATCTATGTGAAATGACTAGCAGACCAGAGGACTACACCAAGAGTAAGAGCCAAATAACCGTATATAATAAACCCAAGTATCCTGTAGGTGAGACAAATATGATAGTGGTACCCAAGTTGATCGAGGAACTCGGGATTATCGAGAATGAAAGTAAAAAAGCAACGATAAAAGTAATTTTATCAAGATGGAAGTAATATCTTTTGATAATAATTCTCTTTGATAGATACCTGCCATAAGACAGTCAAACAGGATAGCCATGAAGAACCTTATGAAACCTAGAGCATTGACATGAAACATTTCCTTCAACCCATACCCAATCTTCATCATAAGCTGAAGCCTGCTAATGAAAGGAAAGTGGGTTCTGATCAACCTGTTCTTATGGAAAATTAGCACACAAATTCATGGCTAGGAAACCTCTGCACTTTTAGCATAGAACACATAAATCATCTAATAAGCAGAGCCCTTACAACACCTTCCCCCTTCTTCGCAAGACATTTATAATGAAATGTAAACCAAGTAGAACTCATGCAAGTTAAGTATAAAGGCTTCAGAATCAATTACAAATAGGAAGAAATCAATCGATCAAACACAAAGTAGAAGTTTCCCATTGATCCAGGGCATCAATAAGTGGCAAGTCAACAAATTGTATAACAATTACAAATAACAAGAGCGAGCATTTGCGATCCAATAGAGTATGTTATGAATAAACTAAACTGTGCAACAACATTATGAAGAAACAAAAATGCTTTACCCGTGCAAACCCTCCCTCTAGTTAGAACAGATTTGTGTAATTTGCAATGCTAATGCCTATATCGGCACATATCTCTTAACTGCCTGCTTTCCCGCAACTGCAGCTGCAGCAGCAATCCCTCCAATGGCACCGGCGATAGCGGCTGACCTTGGCCCGGAAGCCGCCTTGTAAAGCGCACCAGTCCCCAATCCGGCGACAATACTGTTCAAAACATCATCAGTACCTCTCAAATGAATAACCCCACTTTCCAAACCAGCAAAAATCAAGCCAAGAATCCCAAGAGAGTTCCCAGCCCTCCGACCGAGCTGGCCCCCAGAATTGAGAACTCGATTGAGACGGAGCTTGACAGAGTCGCCAGGCTCTGCCGCTCTGAGACCCTGAATAGAGCCTCTGGCGCCGCCGAGAAGGGCGCCAGAGAGGTAGCCAATTCCAGTATAGTACTGGAGATTTTCCCCCCAAGAACGGTGGGGCCTGGCGGCCTCTTCGAAGAAAAGATGCTCGGGAGCGGTGGGGAGCTCGTAGAGCTTTGTGATCGGAACGTGTAGGTCTTGGTAAGGGTGGTAGAAACGGGTATTCTTCCGATCATCACCTGAGTTGGAGGAATCTTCCATTGGAGGAGGAAGAAGGGATGATCGAAGGACCAGAAATTAGGGTTTGAATGAGAGTTTGAATCAAAAGAGGGGGCTTCAAAAGCTT

mRNA sequence

TGGTATTATTCATTTTCGATAAACATTTTCAAAAAATCAACCCAAAACGGATAAGATTTTTCCATCCTTGCCCATCTCGAGAAACCCTGATGGGGTGGCACCATCCAGGACTCCAGGAGCGTCGTACATCAATACCCTTCACCGTTTCACCACTCCCAAATCCACCAATAGAGCTTATTCGATTACAGTCATGGCCACGCCAATCCATAGCCGAATCAGATGTTGGCTTACGGTGTTAAGTATCTTCCGAATTGATAGCAAAATCTGAACGAACAATAACAGAGGGTACCAATGGCAGGCTACGGTACAAGCGAGAGCTATGCTTCTGAAATTGAATTGTTTATATCGCTTGCTGGTGATTCTGATGCTGGGATTTTGGAAGCTTTTCTTAACCCGATGAACGTTTGCAGAGAGCCAACCTGGTGGCTACATTTACTCTGGACAAACTACACAAATCTTTCTAATGAGCAGATCTGCAGTTTCAGTTTCAAACTCATTCTGATCGAGCTGCAGCAGCAATCCCTCCAATGGCACCGGCGATAGCGGCTGACCTTGGCCCGGAAGCCGCCTTGTAAAGCGCACCAGTCCCCAATCCGGCGACAATACTGTTCAAAACATCATCAGTACCTCTCAAATGAATAACCCCACTTTCCAAACCAGCAAAAATCAAGCCAAGAATCCCAAGAGAGTTCCCAGCCCTCCGACCGAGCTGGCCCCCAGAATTGAGAACTCGATTGAGACGGAGCTTGACAGAGTCGCCAGGCTCTGCCGCTCTGAGACCCTGAATAGAGCCTCTGGCGCCGCCGAGAAGGGCGCCAGAGAGGTAGCCAATTCCAGTATAGTACTGGAGATTTTCCCCCCAAGAACGGTGGGGCCTGGCGGCCTCTTCGAAGAAAAGATGCTCGGGAGCGGTGGGGAGCTCGTAGAGCTTTGTGATCGGAACGTGTAGGTCTTGGTAAGGGTGGTAGAAACGGGTATTCTTCCGATCATCACCTGAGTTGGAGGAATCTTCCATTGGAGGAGGAAGAAGGGATGATCGAAGGACCAGAAATTAGGGTTTGAATGAGAGTTTGAATCAAAAGAGGGGGCTTCAAAAGCTT

Coding sequence (CDS)

ATGAATAACCCCACTTTCCAAACCAGCAAAAATCAAGCCAAGAATCCCAAGAGAGTTCCCAGCCCTCCGACCGAGCTGGCCCCCAGAATTGAGAACTCGATTGAGACGGAGCTTGACAGAGTCGCCAGGCTCTGCCGCTCTGAGACCCTGAATAGAGCCTCTGGCGCCGCCGAGAAGGGCGCCAGAGAGGTAGCCAATTCCAGTATAGTACTGGAGATTTTCCCCCCAAGAACGGTGGGGCCTGGCGGCCTCTTCGAAGAAAAGATGCTCGGGAGCGGTGGGGAGCTCGTAGAGCTTTGTGATCGGAACGTGTAG

Protein sequence

MNNPTFQTSKNQAKNPKRVPSPPTELAPRIENSIETELDRVARLCRSETLNRASGAAEKGAREVANSSIVLEIFPPRTVGPGGLFEEKMLGSGGELVELCDRNV

Homology

[Close]

BLAST of Carg06120 vs. NCBI nr
Match: KGN66800.1 (hypothetical protein Csa_1G690360 [Cucumis sativus])

HSP 1 Score: 156.0 bits (393), Expect = 7.0e-35
Identity = 79/104 (75.96%), Postives = 86/104 (82.69%), Query Frame = 0


Query: 1   MNNPTFQTSKNQAKNPKRVPSPPTELAPRIENSIETELDRVARLCRSETLNRASGAAEKG 60
           MNNPTFQTSKNQAK+PKRV SPP +LAPR+ENSIETE DRV RL   E LN   GAA+KG
Sbjct: 1   MNNPTFQTSKNQAKDPKRVSSPPAKLAPRVENSIETEFDRVTRLSCPEALNGTPGAAKKG 60

Query: 61  AREVANSSIVLEIFPPRTVGPGGLFEEKMLGSGGELVELCDRNV 105
           A EVANS ++LE+F PRTV PGG FEEKMLG GGELVEL DRNV
Sbjct: 61  AGEVANSGVILEVFAPRTVRPGGFFEEKMLGGGGELVELGDRNV 104

[Close]

BLAST of Carg06120 vs. TrEMBL
Match: tr|A0A0A0LY52|A0A0A0LY52_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690360 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 4.6e-35
Identity = 79/104 (75.96%), Postives = 86/104 (82.69%), Query Frame = 0


Query: 1   MNNPTFQTSKNQAKNPKRVPSPPTELAPRIENSIETELDRVARLCRSETLNRASGAAEKG 60
           MNNPTFQTSKNQAK+PKRV SPP +LAPR+ENSIETE DRV RL   E LN   GAA+KG
Sbjct: 1   MNNPTFQTSKNQAKDPKRVSSPPAKLAPRVENSIETEFDRVTRLSCPEALNGTPGAAKKG 60

Query: 61  AREVANSSIVLEIFPPRTVGPGGLFEEKMLGSGGELVELCDRNV 105
           A EVANS ++LE+F PRTV PGG FEEKMLG GGELVEL DRNV
Sbjct: 61  AGEVANSGVILEVFAPRTVRPGGFFEEKMLGGGGELVELGDRNV 104

The following BLAST results are available for this feature:

BLAST of Carg06120 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN66800.1	7.0e-35	75.96	hypothetical protein Csa_1G690360 [Cucumis sativus]	[more]

BLAST of Carg06120 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg06120 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg06120 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LY52\|A0A0A0LY52_CUCSA	4.6e-35	75.96	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690360 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06120-RA	Carg06120-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg06120	Csa1G690360	Cucumber (Chinese Long) v2	carcuB0016

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg06120	Wild cucumber (PI 183967)	carcpiB0016
Carg06120	Cucumber (Gy14) v2	carcgybB0015
Carg06120	Cucumber (Gy14) v1	carcgyB0025
Carg06120	Cucurbita maxima (Rimu)	carcmaB0026
Carg06120	Cucurbita moschata (Rifu)	carcmoB0027
Carg06120	Cucurbita pepo (Zucchini)	carcpeB0038
Carg06120	Cucumber (Chinese Long) v3	carcucB0016
Carg06120	Bottle gourd (USVL1VR-Ls)	carlsiB022
Carg06120	Melon (DHL92) v3.5.1	carmeB0020
Carg06120	Melon (DHL92) v3.6.1	carmedB0021
Carg06120	Wax gourd	carwgoB0028