Csa1G668010 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G668010
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionFtsH extracellular protease family; contains IPR000642 (Peptidase M41)
LocationChr1 : 27165261 .. 27166296 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGATAACTGTGAATATGAAGTGGCAGCTAAAGTTGAGAAGGTATATTTTCAATTGTACTTCAAATTTACAAATAATTGACTGAGTTAATCTTATTTGATTCCTACATGGGGACTTAATTGGCTTAGGATTATTTAATTAACCACGCTCACTTTGCTTTTCTAGATTTATGATTTAGCATATTCTAGAGCGAAGGAAATGTTGGGGAAGAACCGTCAAGTTCTTGAAAAGTTTGTTGAAGAATTACTAGAGTTTGAAATTCTTACTGGGAAGGTAACCCTTCAATCTTCTAATAATTATTTGAATCCTATTTTATATTTTCTTTGAATTGGGTTCTTGATCTATTAGATTCCATTCCTATTAAGTGCCCAATAGATTGTTTAAGATATTCACATAATTGAAGAAAAAACATGAGTATAACCATCGGTTGTTCTTTGAGAAATTCTGGGTTTGTTTTAGCTCTCTGAATGATAAATTTTCTTCACACTGTTCAGTGCTAGGGATAACATTTAAATTCCCGATTGAAAACATATTTTTACGGTTCTTATAAAGCATAAATAACTTTAAGGTTACAAACATAAGAAGTCTTGTGGCAGGTTCATGCCATAATTAAATTGATGCAAATCAACACTCTTGACTGTTGGGTGATAAATTGAGATGCTATTCATGTCATGTGAGTGAGTTCATTGGCTATCTGAATTATGCTAGATCCAACTTCAGGAGATTGTTTTTTTTTTTTTTTATCTATCTATTAATTTCATTCGAGTTTACACGGAGTGAAACCTGTATTATAATTTATCTTTTTGGTTTCAATCTGGATAAAAAAATTGTTCATTTGCTTTTCAGCTGAAAATGGTTCTGAATGACGCTGATGACATTTGATTGCAATTACACTAATGAGTAGCCTTCCTCTTGGCAGGTTTTGGAGAGATTAATTGAAACCAATGGAGGAATTAGGGAGAAAGAACCATTTTTTCTTTCCGAATACTACGATAGAGAGGTATATTATATGTTGTTTTCAGTCTATTTATGA

mRNA sequence

ATGGGTGATAACTGTGAATATGAAGTGGCAGCTAAAGTTGAGAAGATTTATGATTTAGCATATTCTAGAGCGAAGGAAATGTTGGGGAAGAACCGTCAAGTTCTTGAAAAGTTTGTTGAAGAATTACTAGAGTTTGAAATTCTTACTGGGAAGGTTTTGGAGAGATTAATTGAAACCAATGGAGGAATTAGGGAGAAAGAACCATTTTTTCTTTCCGAATACTACGATAGAGAGGTATATTATATGTTGTTTTCAGTCTATTTATGA

Coding sequence (CDS)

ATGGGTGATAACTGTGAATATGAAGTGGCAGCTAAAGTTGAGAAGATTTATGATTTAGCATATTCTAGAGCGAAGGAAATGTTGGGGAAGAACCGTCAAGTTCTTGAAAAGTTTGTTGAAGAATTACTAGAGTTTGAAATTCTTACTGGGAAGGTTTTGGAGAGATTAATTGAAACCAATGGAGGAATTAGGGAGAAAGAACCATTTTTTCTTTCCGAATACTACGATAGAGAGGTATATTATATGTTGTTTTCAGTCTATTTATGA

Protein sequence

MGDNCEYEVAAKVEKIYDLAYSRAKEMLGKNRQVLEKFVEELLEFEILTGKVLERLIETNGGIREKEPFFLSEYYDREVYYMLFSVYL*
Homology
[Close]
BLAST of Csa1G668010 vs. Swiss-Prot
Match: FTSI5_ARATH (Probable inactive ATP-dependent zinc metalloprotease FTSHI 5, chloroplastic OS=Arabidopsis thaliana GN=FTSHI5 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.7e-23
Identity = 55/72 (76.39%), Postives = 59/72 (81.94%), Query Frame = 1 

Query: 1    MGDNCEYEVAAKVEKIYDLAYSRAKEMLGKNRQVLEKFVEELLEFEILTGKVLERLIETN 60
            MG+N EYE+A KVEKIYDLAY +AK ML KNR+VLEK  EELLEFEILT K LER++  N
Sbjct: 1221 MGNNHEYEMAGKVEKIYDLAYEKAKGMLLKNRRVLEKITEELLEFEILTHKDLERIVHEN 1280

Query: 61   GGIREKEPFFLS 73
            GGIREKEPFFLS
Sbjct: 1281 GGIREKEPFFLS 1292

[Close]
BLAST of Csa1G668010 vs. TrEMBL
Match: A0A0A0LY85_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G668010 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 6.9e-42
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 

Query: 1  MGDNCEYEVAAKVEKIYDLAYSRAKEMLGKNRQVLEKFVEELLEFEILTGKVLERLIETN 60
          MGDNCEYEVAAKVEKIYDLAYSRAKEMLGKNRQVLEKFVEELLEFEILTGKVLERLIETN
Sbjct: 1  MGDNCEYEVAAKVEKIYDLAYSRAKEMLGKNRQVLEKFVEELLEFEILTGKVLERLIETN 60

Query: 61 GGIREKEPFFLSEYYDREVYYMLFSVYL 89
          GGIREKEPFFLSEYYDREVYYMLFSVYL
Sbjct: 61 GGIREKEPFFLSEYYDREVYYMLFSVYL 88

[Close]
BLAST of Csa1G668010 vs. TrEMBL
Match: A0A067JUT9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23568 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 3.4e-25
Identity = 62/78 (79.49%), Postives = 69/78 (88.46%), Query Frame = 1 

Query: 1    MGDNCEYEVAAKVEKIYDLAYSRAKEMLGKNRQVLEKFVEELLEFEILTGKVLERLIETN 60
            MG+N EY++AAKVEK+YDLAY +AKEML KNR+VLEK VEELLEFEILTGK LER+IE N
Sbjct: 1198 MGNNHEYDIAAKVEKMYDLAYLKAKEMLQKNRRVLEKIVEELLEFEILTGKDLERIIENN 1257

Query: 61   GGIREKEPFFLSEYYDRE 79
            GGIREKEPFFLSE   RE
Sbjct: 1258 GGIREKEPFFLSEANYRE 1275

[Close]
BLAST of Csa1G668010 vs. TrEMBL
Match: D7TUI7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0030g02190 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.2e-24
Identity = 59/78 (75.64%), Postives = 69/78 (88.46%), Query Frame = 1 

Query: 1    MGDNCEYEVAAKVEKIYDLAYSRAKEMLGKNRQVLEKFVEELLEFEILTGKVLERLIETN 60
            MG+N EYEVAAK+EK+Y LAY RAKEML KNR+VLEK VEELLEFEILTGK LER++E N
Sbjct: 1221 MGNNHEYEVAAKIEKMYYLAYDRAKEMLQKNRRVLEKVVEELLEFEILTGKDLERIVEEN 1280

Query: 61   GGIREKEPFFLSEYYDRE 79
            GGIRE EPFFLS+ +++E
Sbjct: 1281 GGIRETEPFFLSKVHEKE 1298

[Close]
BLAST of Csa1G668010 vs. TrEMBL
Match: M5WK23_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000333mg PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.9e-24
Identity = 59/79 (74.68%), Postives = 69/79 (87.34%), Query Frame = 1 

Query: 1    MGDNCEYEVAAKVEKIYDLAYSRAKEMLGKNRQVLEKFVEELLEFEILTGKVLERLIETN 60
            MG+N EY+VAAKVEKIYDLAY +A+EML KNR+VLEK VEELLEFEILT K L+R+ E N
Sbjct: 1177 MGNNHEYDVAAKVEKIYDLAYYKAQEMLHKNRRVLEKIVEELLEFEILTAKDLQRIFEDN 1236

Query: 61   GGIREKEPFFLSEYYDREV 80
            GG+REKEPFFLS  +DRE+
Sbjct: 1237 GGVREKEPFFLSGSHDREL 1255

[Close]
BLAST of Csa1G668010 vs. TrEMBL
Match: A0A067EDF6_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0355612mg PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 3.8e-24
Identity = 59/88 (67.05%), Postives = 73/88 (82.95%), Query Frame = 1 

Query: 1   MGDNCEYEVAAKVEKIYDLAYSRAKEMLGKNRQVLEKFVEELLEFEILTGKVLERLIETN 60
           MG N EYE+A KVEK+YDLAY +AKEML KNR+VLEK VEELLE+EILTGK LERL+++N
Sbjct: 732 MGSNHEYEMATKVEKVYDLAYYKAKEMLQKNRKVLEKVVEELLEYEILTGKDLERLMDSN 791

Query: 61  GGIREKEPFFLSEYYDREVYYMLFSVYL 89
           GGIREKEPFFLS+   +EV+     +++
Sbjct: 792 GGIREKEPFFLSKVDYQEVFSCHLCIFI 819

[Close]
BLAST of Csa1G668010 vs. TAIR10
Match: AT3G04340.1 (AT3G04340.1 FtsH extracellular protease family)

HSP 1 Score: 109.0 bits (271), Expect = 1.5e-24
Identity = 55/72 (76.39%), Postives = 59/72 (81.94%), Query Frame = 1 

Query: 1    MGDNCEYEVAAKVEKIYDLAYSRAKEMLGKNRQVLEKFVEELLEFEILTGKVLERLIETN 60
            MG+N EYE+A KVEKIYDLAY +AK ML KNR+VLEK  EELLEFEILT K LER++  N
Sbjct: 1221 MGNNHEYEMAGKVEKIYDLAYEKAKGMLLKNRRVLEKITEELLEFEILTHKDLERIVHEN 1280

Query: 61   GGIREKEPFFLS 73
            GGIREKEPFFLS
Sbjct: 1281 GGIREKEPFFLS 1292

[Close]
BLAST of Csa1G668010 vs. NCBI nr
Match: gi|700211647|gb|KGN66743.1| (hypothetical protein Csa_1G668010 [Cucumis sativus])

HSP 1 Score: 177.6 bits (449), Expect = 9.9e-42
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1 

Query: 1  MGDNCEYEVAAKVEKIYDLAYSRAKEMLGKNRQVLEKFVEELLEFEILTGKVLERLIETN 60
          MGDNCEYEVAAKVEKIYDLAYSRAKEMLGKNRQVLEKFVEELLEFEILTGKVLERLIETN
Sbjct: 1  MGDNCEYEVAAKVEKIYDLAYSRAKEMLGKNRQVLEKFVEELLEFEILTGKVLERLIETN 60

Query: 61 GGIREKEPFFLSEYYDREVYYMLFSVYL 89
          GGIREKEPFFLSEYYDREVYYMLFSVYL
Sbjct: 61 GGIREKEPFFLSEYYDREVYYMLFSVYL 88

[Close]
BLAST of Csa1G668010 vs. NCBI nr
Match: gi|449449669|ref|XP_004142587.1| (PREDICTED: uncharacterized protein LOC101207174 [Cucumis sativus])

HSP 1 Score: 157.5 bits (397), Expect = 1.1e-35
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1 

Query: 1    MGDNCEYEVAAKVEKIYDLAYSRAKEMLGKNRQVLEKFVEELLEFEILTGKVLERLIETN 60
            MGDNCEYEVAAKVEKIYDLAYSRAKEMLGKNRQVLEKFVEELLEFEILTGKVLERLIETN
Sbjct: 1228 MGDNCEYEVAAKVEKIYDLAYSRAKEMLGKNRQVLEKFVEELLEFEILTGKVLERLIETN 1287

Query: 61   GGIREKEPFFLSEYYDRE 79
            GGIREKEPFFLSEYYDRE
Sbjct: 1288 GGIREKEPFFLSEYYDRE 1305

[Close]
BLAST of Csa1G668010 vs. NCBI nr
Match: gi|659086122|ref|XP_008443775.1| (PREDICTED: uncharacterized protein LOC103487285 [Cucumis melo])

HSP 1 Score: 149.4 bits (376), Expect = 2.9e-33
Identity = 75/78 (96.15%), Postives = 76/78 (97.44%), Query Frame = 1 

Query: 1    MGDNCEYEVAAKVEKIYDLAYSRAKEMLGKNRQVLEKFVEELLEFEILTGKVLERLIETN 60
            MGD+ EYEVAAKVEKIYDLAY RAKEMLGKNRQVLEKFVEELLEFEILTGKVLERLIETN
Sbjct: 1223 MGDSYEYEVAAKVEKIYDLAYCRAKEMLGKNRQVLEKFVEELLEFEILTGKVLERLIETN 1282

Query: 61   GGIREKEPFFLSEYYDRE 79
            GGIREKEPFFLSEYYDRE
Sbjct: 1283 GGIREKEPFFLSEYYDRE 1300

[Close]
BLAST of Csa1G668010 vs. NCBI nr
Match: gi|802759535|ref|XP_012089378.1| (PREDICTED: uncharacterized protein LOC105647765 isoform X2 [Jatropha curcas])

HSP 1 Score: 122.1 bits (305), Expect = 4.9e-25
Identity = 62/78 (79.49%), Postives = 69/78 (88.46%), Query Frame = 1 

Query: 1    MGDNCEYEVAAKVEKIYDLAYSRAKEMLGKNRQVLEKFVEELLEFEILTGKVLERLIETN 60
            MG+N EY++AAKVEK+YDLAY +AKEML KNR+VLEK VEELLEFEILTGK LER+IE N
Sbjct: 1198 MGNNHEYDIAAKVEKMYDLAYLKAKEMLQKNRRVLEKIVEELLEFEILTGKDLERIIENN 1257

Query: 61   GGIREKEPFFLSEYYDRE 79
            GGIREKEPFFLSE   RE
Sbjct: 1258 GGIREKEPFFLSEANYRE 1275

[Close]
BLAST of Csa1G668010 vs. NCBI nr
Match: gi|802759525|ref|XP_012089377.1| (PREDICTED: uncharacterized protein LOC105647765 isoform X1 [Jatropha curcas])

HSP 1 Score: 122.1 bits (305), Expect = 4.9e-25
Identity = 62/78 (79.49%), Postives = 69/78 (88.46%), Query Frame = 1 

Query: 1    MGDNCEYEVAAKVEKIYDLAYSRAKEMLGKNRQVLEKFVEELLEFEILTGKVLERLIETN 60
            MG+N EY++AAKVEK+YDLAY +AKEML KNR+VLEK VEELLEFEILTGK LER+IE N
Sbjct: 1199 MGNNHEYDIAAKVEKMYDLAYLKAKEMLQKNRRVLEKIVEELLEFEILTGKDLERIIENN 1258

Query: 61   GGIREKEPFFLSEYYDRE 79
            GGIREKEPFFLSE   RE
Sbjct: 1259 GGIREKEPFFLSEANYRE 1276

The following BLAST results are available for this feature:
BLAST of Csa1G668010 vs. Swiss-Prot
Match NameE-valueIdentityDescription
FTSI5_ARATH2.7e-2376.39Probable inactive ATP-dependent zinc metalloprotease FTSHI 5, chloroplastic OS=A... [more]
BLAST of Csa1G668010 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LY85_CUCSA6.9e-42100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G668010 PE=4 SV=1[more]
A0A067JUT9_JATCU3.4e-2579.49Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23568 PE=4 SV=1[more]
D7TUI7_VITVI2.2e-2475.64Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0030g02190 PE=4 SV=... [more]
M5WK23_PRUPE2.9e-2474.68Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000333mg PE=4 SV=1[more]
A0A067EDF6_CITSI3.8e-2467.05Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0355612mg PE=4 ... [more]
BLAST of Csa1G668010 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G04340.11.5e-2476.39 FtsH extracellular protease family[more]
BLAST of Csa1G668010 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211647|gb|KGN66743.1|9.9e-42100.00hypothetical protein Csa_1G668010 [Cucumis sativus][more]
gi|449449669|ref|XP_004142587.1|1.1e-35100.00PREDICTED: uncharacterized protein LOC101207174 [Cucumis sativus][more]
gi|659086122|ref|XP_008443775.1|2.9e-3396.15PREDICTED: uncharacterized protein LOC103487285 [Cucumis melo][more]
gi|802759535|ref|XP_012089378.1|4.9e-2579.49PREDICTED: uncharacterized protein LOC105647765 isoform X2 [Jatropha curcas][more]
gi|802759525|ref|XP_012089377.1|4.9e-2579.49PREDICTED: uncharacterized protein LOC105647765 isoform X1 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000642Peptidase_M41
Vocabulary: Molecular Function
TermDefinition
GO:0004222metalloendopeptidase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042981 regulation of apoptotic process
biological_process GO:0006508 proteolysis
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009506 plasmodesma
molecular_function GO:0005524 ATP binding
molecular_function GO:0004222 metalloendopeptidase activity
molecular_function GO:0008568 microtubule-severing ATPase activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU168339cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G668010.1Csa1G668010.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU168339CU168339transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000642Peptidase M41PFAMPF01434Peptidase_M41coord: 4..55
score: 3.
NoneNo IPR availablePANTHERPTHR23076METALLOPROTEASE M41 FTSHcoord: 1..78
score: 6.6
NoneNo IPR availablePANTHERPTHR23076:SF58FTSH EXTRACELLULAR PROTEASE FAMILY PROTEINcoord: 1..78
score: 6.6
NoneNo IPR availableunknownSSF140990FtsH protease domain-likecoord: 3..67
score: 2.09

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G668010Lsi06G007680Bottle gourd (USVL1VR-Ls)culsiB081
Csa1G668010MELO3C010145.2Melon (DHL92) v3.6.1cumedB035
Csa1G668010CSPI01G33070Wild cucumber (PI 183967)cpicuB001
Csa1G668010CmaCh10G010190Cucurbita maxima (Rimu)cmacuB064
Csa1G668010CmoCh10G010760Cucurbita moschata (Rifu)cmocuB054
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G668010Silver-seed gourdcarcuB0927
Csa1G668010Cucumber (Gy14) v1cgycuB555
Csa1G668010Cucurbita maxima (Rimu)cmacuB085
Csa1G668010Cucurbita moschata (Rifu)cmocuB075
Csa1G668010Melon (DHL92) v3.5.1cumeB043
Csa1G668010Watermelon (97103) v1cuwmB018
Csa1G668010Cucurbita pepo (Zucchini)cpecuB639
Csa1G668010Cucurbita pepo (Zucchini)cpecuB701
Csa1G668010Bottle gourd (USVL1VR-Ls)culsiB058
Csa1G668010Cucumber (Gy14) v2cgybcuB002