Csa1G660700 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G660700
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 26620331 .. 26624766 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGAAGTGAGCACTCCACCTGTTAGCCAACAACATTCAGGCACTTGTTTCTCAAAATCAACTTCCCCAGCAGCCTCTTCTGCACGCCTCTTTGCATCTGCTAATGTAAGTCTCTCCCTATACTTAAATAGCTAATAATTATTCTTTCTGCTATACTAAATTTACATATTACAAAGTATTGTTTGAGCCATTATCTTTTCAACTTTAATATTCAAGTTGCATGCTCGAGACTAACTTTTTTTTCTTTTTCTTTCTATCCACCAAATCTTTTATTTCACTTTATTATACTTTTTACTTTTTACTCTCGACATTCTTTCTTTCAGAATGTTTTATTTCTTTTATCTAATATACCAACATTTTTTCGTGAAAGTTGTATAGAGAAATTTGAAAAGTTGCAATTCTTCGCCATGTGGACATGAAGTTTAGTTTTAAAGTAATAATTGATTAATTTTGATTTATCTACATATAATTTCCTTAATTATCATTCTTTCTTTCTTTGAAATGACTCATCCTGTTTCTTTCATGGAAAGTTGTATAGAAAATTTGCATGGTTGCAACTTTTCAACCTAACATAAAACTTATGTTGAACATAAACATTATTTTAATGCTTCCGCTCGTAATTACCTTCTAATTCCTCTCACCAAATTTTTTTGGTAAAGGTAGCTAGCTATTAGCAGCACTTGGACCGTGCAATGTTGTGTAACTATTCTGGCATTCAGTTTAGAAATCTTAAATGAAATTGAGATCAATTAAGTGTAAATGAGATTTGATAATAGCATGGTTGGATGCATCTATTTTCAAAGGAGCAAAATAGGTTGTGGGTTGCCCATCTACAAATTTGATTGGAATACAAAAACTTCATTTCGAACTTGTGGAAGAGGCAAACTACAATAACAAAGGTGCGGATCTATGTGGGCTGACTATCTTTCCTAGGAGCTCAGTAATATTTGGTTTTTCCACGTAAAAACACTTTCATAAGCACAAGTGATATTTGTGGCAAGAAGTAGAATTTTGAAGTCTGAAGAGTGGCAAATATAATAAATGAGTTCGAGACTATTAGTAAGTATGACACAGTGCAATGGAATTTGAAGATATAGAAAATTGAACTATAGCTCTTGAAGCCTACAATTGATGGTTTATTTCGTTCTTAGGAGTATATCAATGATATAGTATATTGATAGATTTTCCTATGTTTGTCATTCCTCCCAAAATATTGTTGTAACACATGCTCTAAGAGTATCTCGTCTCCGATTTGATCAACTTATAAGGATGTCAAGGCATCTAATTGACAAAAAACATCTATAACATCGAGCATGAACTTCAGGTAGTGTATCATTAGCAAGAATCATGGGAGTCTAAGAAAGAGTTTCTCTAAGGTAAAATTTGTCTTTAAGAAAGTAGTAAAAGATGGGAGGTTTCAGTTGACAGAATTAACTAAATGCTAAATTTAAAGTGTAAAAAGTGAAACAAATTGAGAGAGAAAACGAATGATGGACGATATTACCTTTGTCGACTATGAGACAACAGTGGGCCTGTTTGTTTATTGATTAATTCATTGATTTATGATGTTAATTAGGTTAATGAGTTATTTAATTTTCAAGTCTAATAGACTATCAAGTGTGGTTTGGTTTCAATTTGTGTATATGTTATGGTTAGACTCTAACTATGCAACTAAAGTTGACAATTAAGCTACGTTGATGCGATAAAAGGTGCATATTCCTACCTAAATGTTGCTAACTACATCGATTCATCGTTTTGAGTATACGTTTTTCCCTCTCTTACCCAAGTGTAAGTGAAGAGAGAGGTTTCTTAGGTATGTCAGAGTCAAACATGAGGAATTAGTGATTCTAATAGGTTAACTATGCATCCTAAGATCATGCGATATCTATACAGTATAAGTGATATGCACAATATGATTTATGCTATATATTTACACACTATGTGTGATAGAGTAGCAGGGTGGACATTGCGGTGAGATATGCTGGAATATGAACTCATGTACGTTGACGATGATGTGTGGGAAATGTTTAAATAATTAAGTGTAAAGTAAGGACAACTAAATGCATCGGGGTGACATGAAGCATTTGTTAACTTTAGTTTTAAGGCAAGCAATCTCTCGGTGCTTTCATCATACTAGCTCGCCTTTTGGAATCCGTCTAATCCTTGAATTAATTATGCCTAACCTATCCTATATTAAGGCGAGCAACCTCTTGGTGCCTTCACTGCACACACTCGTATTTCTAATATGTATGCTACGGATATGTACGGTGAAAAGATTGTATTGCTACAATCATTTTTTCACTTATTTAGCTAAATCCAAGTCATCATGCATCAAGTGACAATAGTTAACAACTTTATATTTTCATTCAAATAAGATAATACATCAATAGTTGCATTTAACTGAACAAGACAAATAATGTAGACATCCTGATTTTCTAACATTAATCATTCTTTAAATTATTTACCTCTACTTACTTATACTTAAATAGGCCCGTGTGAAAGATAAAAAAAAAAAAAAAAAAGGAGAATGGAAGTATAAATAAATTATATTTATGAATAAAGTTTTAGTCTTTCGGTCATGGAGCTTATGGTATAAATACAATTACAAAAATTACAATTGGAAATACATAATTGTGTTGAGCCTCTGAGTAACATTCTATGACAGTTAATAACTGTCACGAAAAGTGTTTTCCGAAAATTTCCGTCTTTTCCCGCCAAAAACGCGAAATTTTATATTTCGTGACAGTTTTTTTTCCTTCCATTCATTTTTTGAGATATATAACTGTCATTGTAGGGTAGTTTTCTTCTAGAATTCTCATACTCATTAGATCTGCTTTTTTCCTACACTAAAGGGGGATCTCGCGTTTATGTTCTAAACTCTCATCTGAAACAAAGAAGATAAATGGAGGATGGAAGTGAGCTTGCTCTCCGTAGATTTTCACACACGATTCTTGAAGAAGTAGTCTTCTATATATAGGGAGGATTGACATGTTGTGTCACAATCCTGGCTCATTAATTTTCTGAAAAAGTTGCTTCGTGCTGTAGAAGTCACATTCGTCCTTTTCTAGCATTCACACCAACTCTTTGTTCGCTAGCTACCGATATAGAGCACCCAACTTTATGCTTTTGATTGTCTTGTTGGTCGTGTGCCTCCTTGCCTGACATTTGTCGACTAGCTACGCTTCTCTTTTTTCTCTAAAAGCATGCATGCATATACATGGAAAAGACAATAAATAGGCATAAAACTCTTTTGTAGTCTGTAACAGATAACAATGTTATTTTATCTATTTTACTACATGTTTTCTTCATTTTTTATGTTTTAAAGCTTCATTATTCTACCCAAAGGCTACAATAACTTGTATTTCTACAAGTCATCAAAAGTGTCAAGTATTGCTAGGCAAATTCTCTTAACAAAAAAAACACAAAGGTTGATTTCTAAATTAATTAAATTAAAGGATTTGAATCTAGGGGGAGTGTGTGATTTCTTTGTGGTCTTGTCAAGTTTTCTCTTTATTTTAAATCTATTGAATATTTGACTACTTGTCATTTGAGGACCATCATTTTGTGTATTTCTCACTCAACTCATAGTGAGAACTATAAAATGAAATTAGCACTTCTAAAAAATGGTGATCGTGGTGGGGTGACATACTATGGTTTGATAAAACATCACTCTCATCAAATTATAAGGATAAGTTCATACTTTTTGATTATGAAGACTAAATTCTTAACTTTCTACATGCCACAGATATCACATTTGTTTTGTAACCTTCTTTATTTTTATTTATATGTAGGTGAATCGAGCACAAGGAGAAGGCTACGGGAATATGAACTTTGATCAAGGGATGATGAACTTCAACCCTCCTAATTACCATGATTCCTCTTCACAAATTTCGTTCCCGTAAGTTACTACAACCAATCATAATCCAAAACAAATGTACCACAACAATTTCTTAACAAAAAAAATTTATGAAATTATATAGTAAATTGCTAAAACAATTAAAAATGTTTTTCCAAAAATTCATTTTTAGTAAAAACTTTTAAAACTATTTAGTGTTTTGAAACCTATTTTTTCAGTGGTTATCAAACATTCCAATGTTTTATAAAGTCCTTCAGTTTTTAAATTAATTAAAAAATAAAAATGTATTTCAAATACATCCTTAGTAGTTAAGCTATGACTTTTACAAGACTAAGCTTGAAATAATAATGAAACTTAAGCTTAATTTTTATTTGCATTTTGTTGTGATGAGGATTATGAATACAGGTGTGAAGCAGGAATTGGGAATTTGATGAGTGAGGATAATGCATACAATACTAATTGCTATCAGTTTGCAGTTGTAACCAATCATTTGGGTTCTGATTATTTCCCTTTGGCTGTCCCTCCTACTACTCCAACTTTTGCTCATACGTCCAATGTTCAGGTCACTCTCTTTTAG

mRNA sequence

ATGATTGAAGTGAGCACTCCACCTGTTAGCCAACAACATTCAGGCACTTGTTTCTCAAAATCAACTTCCCCAGCAGCCTCTTCTGCACGCCTCTTTGCATCTGCTAATGTGAATCGAGCACAAGGAGAAGGCTACGGGAATATGAACTTTGATCAAGGGATGATGAACTTCAACCCTCCTAATTACCATGATTCCTCTTCACAAATTTCGTTCCCGTGTGAAGCAGGAATTGGGAATTTGATGAGTGAGGATAATGCATACAATACTAATTGCTATCAGTTTGCAGTTGTAACCAATCATTTGGGTTCTGATTATTTCCCTTTGGCTGTCCCTCCTACTACTCCAACTTTTGCTCATACGTCCAATGTTCAGGTCACTCTCTTTTAG

Coding sequence (CDS)

ATGATTGAAGTGAGCACTCCACCTGTTAGCCAACAACATTCAGGCACTTGTTTCTCAAAATCAACTTCCCCAGCAGCCTCTTCTGCACGCCTCTTTGCATCTGCTAATGTGAATCGAGCACAAGGAGAAGGCTACGGGAATATGAACTTTGATCAAGGGATGATGAACTTCAACCCTCCTAATTACCATGATTCCTCTTCACAAATTTCGTTCCCGTGTGAAGCAGGAATTGGGAATTTGATGAGTGAGGATAATGCATACAATACTAATTGCTATCAGTTTGCAGTTGTAACCAATCATTTGGGTTCTGATTATTTCCCTTTGGCTGTCCCTCCTACTACTCCAACTTTTGCTCATACGTCCAATGTTCAGGTCACTCTCTTTTAG

Protein sequence

MIEVSTPPVSQQHSGTCFSKSTSPAASSARLFASANVNRAQGEGYGNMNFDQGMMNFNPPNYHDSSSQISFPCEAGIGNLMSEDNAYNTNCYQFAVVTNHLGSDYFPLAVPPTTPTFAHTSNVQVTLF*

Homology

[Close]

BLAST of Csa1G660700 vs. TrEMBL
Match: A0A0A0M393_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G660700 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 4.3e-69
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1


Query: 1   MIEVSTPPVSQQHSGTCFSKSTSPAASSARLFASANVNRAQGEGYGNMNFDQGMMNFNPP 60
           MIEVSTPPVSQQHSGTCFSKSTSPAASSARLFASANVNRAQGEGYGNMNFDQGMMNFNPP
Sbjct: 1   MIEVSTPPVSQQHSGTCFSKSTSPAASSARLFASANVNRAQGEGYGNMNFDQGMMNFNPP 60

Query: 61  NYHDSSSQISFPCEAGIGNLMSEDNAYNTNCYQFAVVTNHLGSDYFPLAVPPTTPTFAHT 120
           NYHDSSSQISFPCEAGIGNLMSEDNAYNTNCYQFAVVTNHLGSDYFPLAVPPTTPTFAHT
Sbjct: 61  NYHDSSSQISFPCEAGIGNLMSEDNAYNTNCYQFAVVTNHLGSDYFPLAVPPTTPTFAHT 120

Query: 121 SNVQVTLF 129
           SNVQVTLF
Sbjct: 121 SNVQVTLF 128

[Close]

BLAST of Csa1G660700 vs. NCBI nr
Match: gi|700211605|gb|KGN66701.1| (hypothetical protein Csa_1G660700 [Cucumis sativus])

HSP 1 Score: 268.5 bits (685), Expect = 6.2e-69
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1


Query: 1   MIEVSTPPVSQQHSGTCFSKSTSPAASSARLFASANVNRAQGEGYGNMNFDQGMMNFNPP 60
           MIEVSTPPVSQQHSGTCFSKSTSPAASSARLFASANVNRAQGEGYGNMNFDQGMMNFNPP
Sbjct: 1   MIEVSTPPVSQQHSGTCFSKSTSPAASSARLFASANVNRAQGEGYGNMNFDQGMMNFNPP 60

Query: 61  NYHDSSSQISFPCEAGIGNLMSEDNAYNTNCYQFAVVTNHLGSDYFPLAVPPTTPTFAHT 120
           NYHDSSSQISFPCEAGIGNLMSEDNAYNTNCYQFAVVTNHLGSDYFPLAVPPTTPTFAHT
Sbjct: 61  NYHDSSSQISFPCEAGIGNLMSEDNAYNTNCYQFAVVTNHLGSDYFPLAVPPTTPTFAHT 120

Query: 121 SNVQVTLF 129
           SNVQVTLF
Sbjct: 121 SNVQVTLF 128

[Close]

BLAST of Csa1G660700 vs. NCBI nr
Match: gi|659086026|ref|XP_008443727.1| (PREDICTED: uncharacterized protein LOC103487245 isoform X1 [Cucumis melo])

HSP 1 Score: 150.6 bits (379), Expect = 1.9e-33
Identity = 69/80 (86.25%), Postives = 70/80 (87.50%), Query Frame = 1


Query: 48  MNFDQGMMNFNPPNYHDSSSQISFPCEAGIGNLMSEDNAYNTNCYQFAVVTNHLGSDYFP 107
           MN DQGMMNFNPPNYHDSSSQ  FPCEAGIGNLMSEDNA N NCYQFAVVTN LGSDYFP
Sbjct: 1   MNIDQGMMNFNPPNYHDSSSQTLFPCEAGIGNLMSEDNASNANCYQFAVVTNQLGSDYFP 60

Query: 108 LAVPPTTPTFAHTSNVQVTL 128
           LAVPPTTPTF H SN Q T+
Sbjct: 61  LAVPPTTPTFVHMSNAQETM 80

[Close]

BLAST of Csa1G660700 vs. NCBI nr
Match: gi|659086028|ref|XP_008443728.1| (PREDICTED: uncharacterized protein LOC103487245 isoform X2 [Cucumis melo])

HSP 1 Score: 150.6 bits (379), Expect = 1.9e-33
Identity = 69/80 (86.25%), Postives = 70/80 (87.50%), Query Frame = 1


Query: 48  MNFDQGMMNFNPPNYHDSSSQISFPCEAGIGNLMSEDNAYNTNCYQFAVVTNHLGSDYFP 107
           MN DQGMMNFNPPNYHDSSSQ  FPCEAGIGNLMSEDNA N NCYQFAVVTN LGSDYFP
Sbjct: 1   MNIDQGMMNFNPPNYHDSSSQTLFPCEAGIGNLMSEDNASNANCYQFAVVTNQLGSDYFP 60

Query: 108 LAVPPTTPTFAHTSNVQVTL 128
           LAVPPTTPTF H SN Q T+
Sbjct: 61  LAVPPTTPTFVHMSNAQETM 80

The following BLAST results are available for this feature:

BLAST of Csa1G660700 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M393_CUCSA	4.3e-69	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G660700 PE=4 SV=1	[more]

BLAST of Csa1G660700 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700211605\|gb\|KGN66701.1\|	6.2e-69	100.00	hypothetical protein Csa_1G660700 [Cucumis sativus]	[more]
gi\|659086026\|ref\|XP_008443727.1\|	1.9e-33	86.25	PREDICTED: uncharacterized protein LOC103487245 isoform X1 [Cucumis melo]	[more]
gi\|659086028\|ref\|XP_008443728.1\|	1.9e-33	86.25	PREDICTED: uncharacterized protein LOC103487245 isoform X2 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU162244	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G660700.1	Csa1G660700.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU162244	CU162244	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G660700	ClCG03G011050	Watermelon (Charleston Gray)	cuwcgB038
Csa1G660700	CsGy1G031460	Cucumber (Gy14) v2	cgybcuB002

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G660700	Cucurbita moschata (Rifu)	cmocuB075
Csa1G660700	Cucurbita moschata (Rifu)	cmocuB047
Csa1G660700	Melon (DHL92) v3.5.1	cumeB043
Csa1G660700	Watermelon (97103) v1	cuwmB011
Csa1G660700	Cucurbita pepo (Zucchini)	cpecuB349
Csa1G660700	Bottle gourd (USVL1VR-Ls)	culsiB058
Csa1G660700	Bottle gourd (USVL1VR-Ls)	culsiB082
Csa1G660700	Melon (DHL92) v3.6.1	cumedB035
Csa1G660700	Silver-seed gourd	carcuB0927
Csa1G660700	Watermelon (97103) v2	cuwmbB035
Csa1G660700	Wax gourd	cuwgoB090
Csa1G660700	Cucumber (Gy14) v1	cgycuB500
Csa1G660700	Cucurbita maxima (Rimu)	cmacuB057
Csa1G660700	Cucurbita maxima (Rimu)	cmacuB085