CsGy1G031460 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G031460
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr1 : 30356643 .. 30361078 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGAAGTGAGCACTCCACCTGTTAGCCAACAACATTCAGGCACTTGTTTCTCAAAATCAACTTCCCCAGCAGCCTCTTCTGCACGCCTCTTTGCATCTGCTAATGTAAGTCTCTCCCTATACTTAAATAGCTAATAATTATTCTTTCTGCTATACTAAATTTACATATTACAAAGTATTGTTTGAGCCATTATCTTTTCAACTTTAATATTCAAGTTGCATGCTCGAGACTAACTTTTTTTTCTTTTTCTTTCTATCCACCAAATCTTTTATTTCACTTTATTATACTTTTTACTTTTTACTCTCGACATTCTTTCTTTCAGAATGTTTTATTTCTTTTATCTAATATACCAACATTTTTTCGTGAAAGTTGTATAGAGAAATTTGAAAAGTTGCAATTCTTCGCCATGTGGACATGAAGTTTAGTTTTAAAGTAATAATTGATTAATTTTGATTTATCTACATATAATTTCCTTAATTATCATTCTTTCTTTCTTTGAAATGACTCATCCTGTTTCTTTCATGGAAAGTTGTATAGAAAATTTGCATGGTTGCAACTTTTCAACCTAACATAAAACTTATGTTGAACATAAACATTATTTTAATGCTTCCGCTCGTAATTACCTTCTAATTCCTCTCACCAAATTTTTTTGGTAAAGGTAGCTAGCTATTAGCAGCACTTGGACCGTGCAATGTTGTGTAACTATTCTGGCATTCAGTTTAGAAATCTTAAATGAAATTGAGATCAATTAAGTGTAAATGAGATTTGATAATAGCATGGTTGGATGCATCTATTTTCAAAGGAGCAAAATAGGTTGTGGGTTGCCCATCTACAAATTTGATTGGAATACAAAAACTTCATTTCGAACTTGTGGAAGAGGCAAACTACAATAACAAAGGTGCGGATCTATGTGGGCTGACTATCTTTCCTAGGAGCTCAGTAATATTTGGTTTTTCCACGTAAAAACACTTTCATAAGCACAAGTGATATTTGTGGCAAGAAGTAGAATTTTGAAGTCTGAAGAGTGGCAAATATAATAAATGAGTTCGAGACTATTAGTAAGTATGACACAGTGCAATGGAATTTGAAGATATAGAAAATTGAACTATAGCTCTTGAAGCCTACAATTGATGGTTTATTTCGTTCTTAGGAGTATATCAATGATATAGTATATTGATAGATTTTCCTATGTTTGTCATTCCTCCCAAAATATTGTTGTAACACATGCTCTAAGAGTATCTCGTCTCCGATTTGATCAACTTATAAGGATGTCAAGGCATCTAATTGACAAAAAACATCTATAACATCGAGCATGAACTTCAGGTAGTGTATCATTAGCAAGAATCATGGGAGTCTAAGAAAGAGTTTCTCTAAGGTAAAATTTGTCTTTAAGAAAGTAGTAAAAGATGGGAGGTTTCAGTTGACAGAATTAACTAAATGCTAAATTTAAAGTGTAAAAAGTGAAACAAATTGAGAGAGAAAACGAATGATGGACGATATTACCTTTGTCGACTATGAGACAACAGTGGGCCTGTTTGTTTATTGATTAATTCATTGATTTATGATGTTAATTAGGTTAATGAGTTATTTAATTTTCAAGTCTAATAGACTATCAAGTGTGGTTTGGTTTCAATTTGTGTATATGTTATGGTTAGACTCTAACTATGCAACTAAAGTTGACAATTAAGCTACGTTGATGCGATAAAAGGTGCATATTCCTACCTAAATGTTGCTAACTACATCGATTCATCGTTTTGAGTATACGTTTTTCCCTCTCTTACCCAAGTGTAAGTGAAGAGAGAGGTTTCTTAGGTATGTCAGAGTCAAACATGAGGAATTAGTGATTCTAATAGGTTAACTATGCATCCTAAGATCATGCGATATCTATACAGTATAAGTGATATGCACAATATGATTTATGCTATATATTTACACACTATGTGTGATAGAGTAGCAGGGTGGACATTGCGGTGAGATATGCTGGAATATGAACTCATGTACGTTGACGATGATGTGTGGGAAATGTTTAAATAATTAAGTGTAAAGTAAGGACAACTAAATGCATCGGGGTGACATGAAGCATTTGTTAACTTTAGTTTTAAGGCAAGCAATCTCTCGGTGCTTTCATCATACTAGCTCGCCTTTTGGAATCCGTCTAATCCTTGAATTAATTATGCCTAACCTATCCTATATTAAGGCGAGCAACCTCTTGGTGCCTTCACTGCACACACTCGTATTTCTAATATGTATGCTACGGATATGTACGGTGAAAAGATTGTATTGCTACAATCATTTTTTCACTTATTTAGCTAAATCCAAGTCATCATGCATCAAGTGACAATAGTTAACAACTTTATATTTTCATTCAAATAAGATAATACATCAATAGTTGCATTTAACTGAACAAGACAAATAATGTAGACATCCTGATTTTCTAACATTAATCATTCTTTAAATTATTTACCTCTACTTACTTATACTTAAATAGGCCCGTGTGAAAGATAAAAAAAAAAAAAAAAAAGGAGAATGGAAGTATAAATAAATTATATTTATGAATAAAGTTTTAGTCTTTCGGTCATGGAGCTTATGGTATAAATACAATTACAAAAATTACAATTGGAAATACATAATTGTGTTGAGCCTCTGAGTAACATTCTATGACAGTTAATAACTGTCACGAAAAGTGTTTTCCGAAAATTTCCGTCTTTTCCCGCCAAAAACGCGAAATTTTATATTTCGTGACAGTTTTTTTTCCTTCCATTCATTTTTTGAGATATATAACTGTCATTGTAGGGTAGTTTTCTTCTAGAATTCTCATACTCATTAGATCTGCTTTTTTCCTACACTAAAGGGGGATCTCGCGTTTATGTTCTAAACTCTCATCTGAAACAAAGAAGATAAATGGAGGATGGAAGTGAGCTTGCTCTCCGTAGATTTTCACACACGATTCTTGAAGAAGTAGTCTTCTATATATAGGGAGGATTGACATGTTGTGTCACAATCCTGGCTCATTAATTTTCTGAAAAAGTTGCTTCGTGCTGTAGAAGTCACATTCGTCCTTTTCTAGCATTCACACCAACTCTTTGTTCGCTAGCTACCGATATAGAGCACCCAACTTTATGCTTTTGATTGTCTTGTTGGTCGTGTGCCTCCTTGCCTGACATTTGTCGACTAGCTACGCTTCTCTTTTTTCTCTAAAAGCATGCATGCATATACATGGAAAAGACAATAAATAGGCATAAAACTCTTTTGTAGTCTGTAACAGATAACAATGTTATTTTATCTATTTTACTACATGTTTTCTTCATTTTTTATGTTTTAAAGCTTCATTATTCTACCCAAAGGCTACAATAACTTGTATTTCTACAAGTCATCAAAAGTGTCAAGTATTGCTAGGCAAATTCTCTTAACAAAAAAAACACAAAGGTTGATTTCTAAATTAATTAAATTAAAGGATTTGAATCTAGGGGGAGTGTGTGATTTCTTTGTGGTCTTGTCAAGTTTTCTCTTTATTTTAAATCTATTGAATATTTGACTACTTGTCATTTGAGGACCATCATTTTGTGTATTTCTCACTCAACTCATAGTGAGAACTATAAAATGAAATTAGCACTTCTAAAAAATGGTGATCGTGGTGGGGTGACATACTATGGTTTGATAAAACATCACTCTCATCAAATTATAAGGATAAGTTCATACTTTTTGATTATGAAGACTAAATTCTTAACTTTCTACATGCCACAGATATCACATTTGTTTTGTAACCTTCTTTATTTTTATTTATATGTAGGTGAATCGAGCACAAGGAGAAGGCTACGGGAATATGAACTTTGATCAAGGGATGATGAACTTCAACCCTCCTAATTACCATGATTCCTCTTCACAAATTTCGTTCCCGTAAGTTACTACAACCAATCATAATCCAAAACAAATGTACCACAACAATTTCTTAACAAAAAAAATTTATGAAATTATATAGTAAATTGCTAAAACAATTAAAAATGTTTTTCCAAAAATTCATTTTTAGTAAAAACTTTTAAAACTATTTAGTGTTTTGAAACCTATTTTTTCAGTGGTTATCAAACATTCCAATGTTTTATAAAGTCCTTCAGTTTTTAAATTAATTAAAAAATAAAAATGTATTTCAAATACATCCTTAGTAGTTAAGCTATGACTTTTACAAGACTAAGCTTGAAATAATAATGAAACTTAAGCTTAATTTTTATTTGCATTTTGTTGTGATGAGGATTATGAATACAGGTGTGAAGCAGGAATTGGGAATTTGATGAGTGAGGATAATGCATACAATACTAATTGCTATCAGTTTGCAGTTGTAACCAATCATTTGGGTTCTGATTATTTCCCTTTGGCTGTCCCTCCTACTACTCCAACTTTTGCTCATACGTCCAATGTTCAGGTCACTCTCTTTTAG

mRNA sequence

ATGATTGAAGTGAGCACTCCACCTGTTAGCCAACAACATTCAGGCACTTGTTTCTCAAAATCAACTTCCCCAGCAGCCTCTTCTGCACGCCTCTTTGCATCTGCTAATGTGAATCGAGCACAAGGAGAAGGCTACGGGAATATGAACTTTGATCAAGGGATGATGAACTTCAACCCTCCTAATTACCATGATTCCTCTTCACAAATTTCGTTCCCGTGTGAAGCAGGAATTGGGAATTTGATGAGTGAGGATAATGCATACAATACTAATTGCTATCAGTTTGCAGTTGTAACCAATCATTTGGGTTCTGATTATTTCCCTTTGGCTGTCCCTCCTACTACTCCAACTTTTGCTCATACGTCCAATGTTCAGGTCACTCTCTTTTAG

Coding sequence (CDS)

ATGATTGAAGTGAGCACTCCACCTGTTAGCCAACAACATTCAGGCACTTGTTTCTCAAAATCAACTTCCCCAGCAGCCTCTTCTGCACGCCTCTTTGCATCTGCTAATGTGAATCGAGCACAAGGAGAAGGCTACGGGAATATGAACTTTGATCAAGGGATGATGAACTTCAACCCTCCTAATTACCATGATTCCTCTTCACAAATTTCGTTCCCGTGTGAAGCAGGAATTGGGAATTTGATGAGTGAGGATAATGCATACAATACTAATTGCTATCAGTTTGCAGTTGTAACCAATCATTTGGGTTCTGATTATTTCCCTTTGGCTGTCCCTCCTACTACTCCAACTTTTGCTCATACGTCCAATGTTCAGGTCACTCTCTTTTAG

Protein sequence

MIEVSTPPVSQQHSGTCFSKSTSPAASSARLFASANVNRAQGEGYGNMNFDQGMMNFNPPNYHDSSSQISFPCEAGIGNLMSEDNAYNTNCYQFAVVTNHLGSDYFPLAVPPTTPTFAHTSNVQVTLF

Homology

[Close]

BLAST of CsGy1G031460 vs. NCBI nr
Match: KGN66701.1 (hypothetical protein Csa_1G660700 [Cucumis sativus])

HSP 1 Score: 261.2 bits (666), Expect = 1.9e-66
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MIEVSTPPVSQQHSGTCFSKSTSPAASSARLFASANVNRAQGEGYGNMNFDQGMMNFNPP 60
           MIEVSTPPVSQQHSGTCFSKSTSPAASSARLFASANVNRAQGEGYGNMNFDQGMMNFNPP
Sbjct: 1   MIEVSTPPVSQQHSGTCFSKSTSPAASSARLFASANVNRAQGEGYGNMNFDQGMMNFNPP 60

Query: 61  NYHDSSSQISFPCEAGIGNLMSEDNAYNTNCYQFAVVTNHLGSDYFPLAVPPTTPTFAHT 120
           NYHDSSSQISFPCEAGIGNLMSEDNAYNTNCYQFAVVTNHLGSDYFPLAVPPTTPTFAHT
Sbjct: 61  NYHDSSSQISFPCEAGIGNLMSEDNAYNTNCYQFAVVTNHLGSDYFPLAVPPTTPTFAHT 120

Query: 121 SNVQVTLF 129
           SNVQVTLF
Sbjct: 121 SNVQVTLF 128

[Close]

BLAST of CsGy1G031460 vs. NCBI nr
Match: XP_008443727.1 (PREDICTED: uncharacterized protein LOC103487245 isoform X1 [Cucumis melo])

HSP 1 Score: 148.3 bits (373), Expect = 1.8e-32
Identity = 69/80 (86.25%), Postives = 70/80 (87.50%), Query Frame = 0


Query: 48  MNFDQGMMNFNPPNYHDSSSQISFPCEAGIGNLMSEDNAYNTNCYQFAVVTNHLGSDYFP 107
           MN DQGMMNFNPPNYHDSSSQ  FPCEAGIGNLMSEDNA N NCYQFAVVTN LGSDYFP
Sbjct: 1   MNIDQGMMNFNPPNYHDSSSQTLFPCEAGIGNLMSEDNASNANCYQFAVVTNQLGSDYFP 60

Query: 108 LAVPPTTPTFAHTSNVQVTL 128
           LAVPPTTPTF H SN Q T+
Sbjct: 61  LAVPPTTPTFVHMSNAQETM 80

[Close]

BLAST of CsGy1G031460 vs. NCBI nr
Match: XP_008443728.1 (PREDICTED: uncharacterized protein LOC103487245 isoform X2 [Cucumis melo])

HSP 1 Score: 148.3 bits (373), Expect = 1.8e-32
Identity = 69/80 (86.25%), Postives = 70/80 (87.50%), Query Frame = 0


Query: 48  MNFDQGMMNFNPPNYHDSSSQISFPCEAGIGNLMSEDNAYNTNCYQFAVVTNHLGSDYFP 107
           MN DQGMMNFNPPNYHDSSSQ  FPCEAGIGNLMSEDNA N NCYQFAVVTN LGSDYFP
Sbjct: 1   MNIDQGMMNFNPPNYHDSSSQTLFPCEAGIGNLMSEDNASNANCYQFAVVTNQLGSDYFP 60

Query: 108 LAVPPTTPTFAHTSNVQVTL 128
           LAVPPTTPTF H SN Q T+
Sbjct: 61  LAVPPTTPTFVHMSNAQETM 80

[Close]

BLAST of CsGy1G031460 vs. TrEMBL
Match: tr|A0A0A0M393|A0A0A0M393_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G660700 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 1.3e-66
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MIEVSTPPVSQQHSGTCFSKSTSPAASSARLFASANVNRAQGEGYGNMNFDQGMMNFNPP 60
           MIEVSTPPVSQQHSGTCFSKSTSPAASSARLFASANVNRAQGEGYGNMNFDQGMMNFNPP
Sbjct: 1   MIEVSTPPVSQQHSGTCFSKSTSPAASSARLFASANVNRAQGEGYGNMNFDQGMMNFNPP 60

Query: 61  NYHDSSSQISFPCEAGIGNLMSEDNAYNTNCYQFAVVTNHLGSDYFPLAVPPTTPTFAHT 120
           NYHDSSSQISFPCEAGIGNLMSEDNAYNTNCYQFAVVTNHLGSDYFPLAVPPTTPTFAHT
Sbjct: 61  NYHDSSSQISFPCEAGIGNLMSEDNAYNTNCYQFAVVTNHLGSDYFPLAVPPTTPTFAHT 120

Query: 121 SNVQVTLF 129
           SNVQVTLF
Sbjct: 121 SNVQVTLF 128

[Close]

BLAST of CsGy1G031460 vs. TrEMBL
Match: tr|A0A1S3B8P4|A0A1S3B8P4_CUCME (uncharacterized protein LOC103487245 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487245 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.2e-32
Identity = 69/80 (86.25%), Postives = 70/80 (87.50%), Query Frame = 0


Query: 48  MNFDQGMMNFNPPNYHDSSSQISFPCEAGIGNLMSEDNAYNTNCYQFAVVTNHLGSDYFP 107
           MN DQGMMNFNPPNYHDSSSQ  FPCEAGIGNLMSEDNA N NCYQFAVVTN LGSDYFP
Sbjct: 1   MNIDQGMMNFNPPNYHDSSSQTLFPCEAGIGNLMSEDNASNANCYQFAVVTNQLGSDYFP 60

Query: 108 LAVPPTTPTFAHTSNVQVTL 128
           LAVPPTTPTF H SN Q T+
Sbjct: 61  LAVPPTTPTFVHMSNAQETM 80

[Close]

BLAST of CsGy1G031460 vs. TrEMBL
Match: tr|A0A1S3B887|A0A1S3B887_CUCME (uncharacterized protein LOC103487245 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487245 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.2e-32
Identity = 69/80 (86.25%), Postives = 70/80 (87.50%), Query Frame = 0


Query: 48  MNFDQGMMNFNPPNYHDSSSQISFPCEAGIGNLMSEDNAYNTNCYQFAVVTNHLGSDYFP 107
           MN DQGMMNFNPPNYHDSSSQ  FPCEAGIGNLMSEDNA N NCYQFAVVTN LGSDYFP
Sbjct: 1   MNIDQGMMNFNPPNYHDSSSQTLFPCEAGIGNLMSEDNASNANCYQFAVVTNQLGSDYFP 60

Query: 108 LAVPPTTPTFAHTSNVQVTL 128
           LAVPPTTPTF H SN Q T+
Sbjct: 61  LAVPPTTPTFVHMSNAQETM 80

The following BLAST results are available for this feature:

BLAST of CsGy1G031460 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN66701.1	1.9e-66	100.00	hypothetical protein Csa_1G660700 [Cucumis sativus]	[more]
XP_008443727.1	1.8e-32	86.25	PREDICTED: uncharacterized protein LOC103487245 isoform X1 [Cucumis melo]	[more]
XP_008443728.1	1.8e-32	86.25	PREDICTED: uncharacterized protein LOC103487245 isoform X2 [Cucumis melo]	[more]

BLAST of CsGy1G031460 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G031460 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G031460 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0M393\|A0A0A0M393_CUCSA	1.3e-66	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G660700 PE=4 SV=1	[more]
tr\|A0A1S3B8P4\|A0A1S3B8P4_CUCME	1.2e-32	86.25	uncharacterized protein LOC103487245 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3B887\|A0A1S3B887_CUCME	1.2e-32	86.25	uncharacterized protein LOC103487245 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G031460.1	CsGy1G031460.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G031460	Csa1G660700	Cucumber (Chinese Long) v2	cgybcuB002
CsGy1G031460	ClCG03G011050	Watermelon (Charleston Gray)	cgybwcgB036

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G031460	Cucurbita maxima (Rimu)	cgybcmaB013
CsGy1G031460	Cucurbita maxima (Rimu)	cgybcmaB027
CsGy1G031460	Cucurbita moschata (Rifu)	cgybcmoB013
CsGy1G031460	Cucurbita moschata (Rifu)	cgybcmoB027
CsGy1G031460	Cucurbita pepo (Zucchini)	cgybcpeB039
CsGy1G031460	Bottle gourd (USVL1VR-Ls)	cgyblsiB055
CsGy1G031460	Bottle gourd (USVL1VR-Ls)	cgyblsiB076
CsGy1G031460	Melon (DHL92) v3.5.1	cgybmeB040
CsGy1G031460	Melon (DHL92) v3.6.1	cgybmedB034
CsGy1G031460	Watermelon (97103) v1	cgybwmB013
CsGy1G031460	Wild cucumber (PI 183967)	cgybcpiB002
CsGy1G031460	Silver-seed gourd	carcgybB0899
CsGy1G031460	Cucumber (Chinese Long) v3	cgybcucB001
CsGy1G031460	Watermelon (97103) v2	cgybwmbB035
CsGy1G031460	Wax gourd	cgybwgoB086