Csa1G657500 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G657500
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 26331827 .. 26332282 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AACAAACGGGAACTTCTTTGCTGTTAACATGGTTAGATAATGTATACAATGTTGCATTGAGGTTGTTGCTTTTACAATCCGAACAAAAATCTACGGAGAGTCTGAGTTTAGGAGAGGGTTGTCATGATCCGGAAATTAGTTGTAGTGACACACAAAGTGTGAAGATGAACGAATTGGATCAGAAAGTTGTGAATAATGGCCATGTTACTGGAGAAGATCAAACGGTCAATTGTAGGGTGATTCTTGTGTCCCAAGTTGCTGCAGCGTTGCATGAGCGTCTCCTACTTGAAGAAAAAGCTCATCTGCAAACTAAATATGAGCGGTATGTTACTTCTACAATTACTAGTCCTGTTTTTCATGTAGGTACTAGTTTTGATTGATGTTTTACTTAGTGTTTACTCGTTTGTTGGCCCCTTTCCAACTCGAGTTCAAATTCCACTCCCTGGATTTGACTAA

mRNA sequence

ATGAACGAATTGGATCAGAAAGTTGTGAATAATGGCCATGTTACTGGAGAAGATCAAACGGTCAATTGTAGGGTGATTCTTGTGTCCCAAGTTGCTGCAGCGTTGCATGAGCGTCTCCTACTTGAAGAAAAAGCTCATCTGCAAACTAAATATGAGCGTGTTTACTCGTTTGTTGGCCCCTTTCCAACTCGAGTTCAAATTCCACTCCCTGGATTTGACTAA

Coding sequence (CDS)

ATGAACGAATTGGATCAGAAAGTTGTGAATAATGGCCATGTTACTGGAGAAGATCAAACGGTCAATTGTAGGGTGATTCTTGTGTCCCAAGTTGCTGCAGCGTTGCATGAGCGTCTCCTACTTGAAGAAAAAGCTCATCTGCAAACTAAATATGAGCGTGTTTACTCGTTTGTTGGCCCCTTTCCAACTCGAGTTCAAATTCCACTCCCTGGATTTGACTAA

Protein sequence

MNELDQKVVNNGHVTGEDQTVNCRVILVSQVAAALHERLLLEEKAHLQTKYERVYSFVGPFPTRVQIPLPGFD*

Homology

[Close]

BLAST of Csa1G657500 vs. TrEMBL
Match: A0A0A0M049_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G657500 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 9.8e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  MNELDQKVVNNGHVTGEDQTVNCRVILVSQVAAALHERLLLEEKAHLQTKYERVYSFVGP 60
          MNELDQKVVNNGHVTGEDQTVNCRVILVSQVAAALHERLLLEEKAHLQTKYERVYSFVGP
Sbjct: 1  MNELDQKVVNNGHVTGEDQTVNCRVILVSQVAAALHERLLLEEKAHLQTKYERVYSFVGP 60

Query: 61 FPTRVQIPLPGFD 74
          FPTRVQIPLPGFD
Sbjct: 61 FPTRVQIPLPGFD 73

[Close]

BLAST of Csa1G657500 vs. TrEMBL
Match: A0A0A0M085_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G662780 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.6e-10
Identity = 44/66 (66.67%), Postives = 46/66 (69.70%), Query Frame = 1


Query: 1   MNELDQKVVNNGHVTGEDQTVNCRVILVSQVA---AALHERLLLEEK------AHLQTKY 58
           MNELDQKVVNNGH       VNC VILVSQVA   AALHER LLEEK      AHLQTKY
Sbjct: 393 MNELDQKVVNNGH------AVNCSVILVSQVAAAVAALHERFLLEEKIKALRFAHLQTKY 452

[Close]

BLAST of Csa1G657500 vs. NCBI nr
Match: gi|700211578|gb|KGN66674.1| (hypothetical protein Csa_1G657500 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 1.4e-33
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  MNELDQKVVNNGHVTGEDQTVNCRVILVSQVAAALHERLLLEEKAHLQTKYERVYSFVGP 60
          MNELDQKVVNNGHVTGEDQTVNCRVILVSQVAAALHERLLLEEKAHLQTKYERVYSFVGP
Sbjct: 1  MNELDQKVVNNGHVTGEDQTVNCRVILVSQVAAALHERLLLEEKAHLQTKYERVYSFVGP 60

Query: 61 FPTRVQIPLPGFD 74
          FPTRVQIPLPGFD
Sbjct: 61 FPTRVQIPLPGFD 73

[Close]

BLAST of Csa1G657500 vs. NCBI nr
Match: gi|659086077|ref|XP_008443753.1| (PREDICTED: uncharacterized protein LOC103487266 [Cucumis melo])

HSP 1 Score: 82.0 bits (201), Expect = 4.7e-13
Identity = 48/66 (72.73%), Postives = 52/66 (78.79%), Query Frame = 1


Query: 1   MNELDQKVVNNGHVTGEDQTVNCRVILVSQVA---AALHERLLLEEK------AHLQTKY 58
           MNELDQKVVNNG+VTG  +TVNCRVILVSQVA   AALHER LLEEK      AHLQTKY
Sbjct: 392 MNELDQKVVNNGNVTG-GETVNCRVILVSQVAAAVAALHERFLLEEKIKALRFAHLQTKY 451

[Close]

BLAST of Csa1G657500 vs. NCBI nr
Match: gi|778664187|ref|XP_011660240.1| (PREDICTED: U11/U12 small nuclear ribonucleoprotein 48 kDa protein isoform X1 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 3.7e-10
Identity = 44/66 (66.67%), Postives = 46/66 (69.70%), Query Frame = 1


Query: 1   MNELDQKVVNNGHVTGEDQTVNCRVILVSQVA---AALHERLLLEEK------AHLQTKY 58
           MNELDQKVVNNGH       VNC VILVSQVA   AALHER LLEEK      AHLQTKY
Sbjct: 393 MNELDQKVVNNGH------AVNCSVILVSQVAAAVAALHERFLLEEKIKALRFAHLQTKY 452

[Close]

BLAST of Csa1G657500 vs. NCBI nr
Match: gi|778664192|ref|XP_004142553.2| (PREDICTED: U11/U12 small nuclear ribonucleoprotein 48 kDa protein isoform X2 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 3.7e-10
Identity = 44/66 (66.67%), Postives = 46/66 (69.70%), Query Frame = 1


Query: 1   MNELDQKVVNNGHVTGEDQTVNCRVILVSQVA---AALHERLLLEEK------AHLQTKY 58
           MNELDQKVVNNGH       VNC VILVSQVA   AALHER LLEEK      AHLQTKY
Sbjct: 393 MNELDQKVVNNGH------AVNCSVILVSQVAAAVAALHERFLLEEKIKALRFAHLQTKY 452

The following BLAST results are available for this feature:

BLAST of Csa1G657500 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M049_CUCSA	9.8e-34	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G657500 PE=4 SV=1	[more]
A0A0A0M085_CUCSA	2.6e-10	66.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G662780 PE=4 SV=1	[more]

BLAST of Csa1G657500 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700211578\|gb\|KGN66674.1\|	1.4e-33	100.00	hypothetical protein Csa_1G657500 [Cucumis sativus]	[more]
gi\|659086077\|ref\|XP_008443753.1\|	4.7e-13	72.73	PREDICTED: uncharacterized protein LOC103487266 [Cucumis melo]	[more]
gi\|778664187\|ref\|XP_011660240.1\|	3.7e-10	66.67	PREDICTED: U11/U12 small nuclear ribonucleoprotein 48 kDa protein isoform X1 [Cu...	[more]
gi\|778664192\|ref\|XP_004142553.2\|	3.7e-10	66.67	PREDICTED: U11/U12 small nuclear ribonucleoprotein 48 kDa protein isoform X2 [Cu...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU135938	cucumber EST collection version 3.0	transcribed_cluster
CU174717	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G657500.1	Csa1G657500.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU174717	CU174717	transcribed_cluster
CU135938	CU135938	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G657500	Melon (DHL92) v3.5.1	cumeB043
Csa1G657500	Watermelon (Charleston Gray)	cuwcgB038
Csa1G657500	Watermelon (97103) v1	cuwmB011
Csa1G657500	Cucurbita pepo (Zucchini)	cpecuB000
Csa1G657500	Cucurbita pepo (Zucchini)	cpecuB349
Csa1G657500	Bottle gourd (USVL1VR-Ls)	culsiB058
Csa1G657500	Bottle gourd (USVL1VR-Ls)	culsiB082
Csa1G657500	Cucumber (Gy14) v2	cgybcuB002
Csa1G657500	Melon (DHL92) v3.6.1	cumedB035
Csa1G657500	Silver-seed gourd	carcuB0565
Csa1G657500	Silver-seed gourd	carcuB0982
Csa1G657500	Watermelon (97103) v2	cuwmbB035
Csa1G657500	Wax gourd	cuwgoB090
Csa1G657500	Cucumber (Gy14) v1	cgycuB500
Csa1G657500	Cucurbita maxima (Rimu)	cmacuB057
Csa1G657500	Cucurbita maxima (Rimu)	cmacuB085
Csa1G657500	Cucurbita moschata (Rifu)	cmocuB075
Csa1G657500	Cucurbita moschata (Rifu)	cmocuB047