Csa1G655930 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G655930
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionPutative riboflavin biosynthesis protein ribD; contains IPR016193 (Cytidine deaminase-like)
LocationChr1 : 26239770 .. 26240247 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCATTTCATTGACATTCGTCTCACTCTCTCGGAGGTGCAGGAAGAAGAAAGACTTCGCCACCGCCACATTTAGCGATGATCTTCTCTTTAGTTCCTTCTTCCCCTATAATCTGTTTCTCAAGGCCCGCAGCAGCGGCGATCTCCACCTCTACGACTTCCCTCTCTCAATCTCAATATTCCTTGGAATCCACATTCATCCGCCGCGCCGCTGAGATCGCCGATAAATCAGCCGGATTCACAGCTCCACATCCCAACTATGGCTGTATTGTCGCTACTCCTTCCGGCGCTGTTGCCGGGCAGGGCTTCCTCTTTGGGCAGGGCACCAAATCGGCTGAAGTTCAGGCTGTGGAAGAAGCCGGTGAATACTGCCGTGGAGGTACAGCGTTTCTTAATCTGGAGCCCAGTGAATGCGCCGGCGATGACATTGCTGTTTCTGCTTTGGTCCAGGTTCGGCAGTTGCCTAATCCATCTCTATAG

mRNA sequence

ATGATCTTCTCTTTAGTTCCTTCTTCCCCTATAATCTGTTTCTCAAGGCCCGCAGCAGCGGCGATCTCCACCTCTACGACTTCCCTCTCTCAATCTCAATATTCCTTGGAATCCACATTCATCCGCCGCGCCGCTGAGATCGCCGATAAATCAGCCGGATTCACAGCTCCACATCCCAACTATGGCTGTATTGTCGCTACTCCTTCCGGCGCTGTTGCCGGGCAGGGCTTCCTCTTTGGGCAGGGCACCAAATCGGCTGAAGTTCAGGCTGTGGAAGAAGCCGGTGAATACTGCCGTGGAGGTACAGCGTTTCTTAATCTGGAGCCCAGTGAATGCGCCGGCGATGACATTGCTGTTTCTGCTTTGGTCCAGGTTCGGCAGTTGCCTAATCCATCTCTATAG

Coding sequence (CDS)

ATGATCTTCTCTTTAGTTCCTTCTTCCCCTATAATCTGTTTCTCAAGGCCCGCAGCAGCGGCGATCTCCACCTCTACGACTTCCCTCTCTCAATCTCAATATTCCTTGGAATCCACATTCATCCGCCGCGCCGCTGAGATCGCCGATAAATCAGCCGGATTCACAGCTCCACATCCCAACTATGGCTGTATTGTCGCTACTCCTTCCGGCGCTGTTGCCGGGCAGGGCTTCCTCTTTGGGCAGGGCACCAAATCGGCTGAAGTTCAGGCTGTGGAAGAAGCCGGTGAATACTGCCGTGGAGGTACAGCGTTTCTTAATCTGGAGCCCAGTGAATGCGCCGGCGATGACATTGCTGTTTCTGCTTTGGTCCAGGTTCGGCAGTTGCCTAATCCATCTCTATAG

Protein sequence

MIFSLVPSSPIICFSRPAAAAISTSTTSLSQSQYSLESTFIRRAAEIADKSAGFTAPHPNYGCIVATPSGAVAGQGFLFGQGTKSAEVQAVEEAGEYCRGGTAFLNLEPSECAGDDIAVSALVQVRQLPNPSL*
Homology
[Close]
BLAST of Csa1G655930 vs. Swiss-Prot
Match: RIBRX_ARATH (Riboflavin biosynthesis protein PYRR, chloroplastic OS=Arabidopsis thaliana GN=PYRR PE=1 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 7.7e-30
Identity = 63/122 (51.64%), Postives = 87/122 (71.31%), Query Frame = 1 

Query: 3   FSLVPSSPIICFSRPAAAAISTSTTSLSQSQYSLESTFIRRAAEIADKSAGFTAPHPNYG 62
           F +  SSP+IC +       + S    S++ ++ ++ FIRRAA++++ SAG T+PHPN+G
Sbjct: 5   FRISSSSPLICRA-------TLSNGDNSRNYHTTDAAFIRRAADLSEMSAGLTSPHPNFG 64

Query: 63  CIVATPSGAVAGQGFLFGQGTKSAEVQAVEEAGEYCRGGTAFLNLEPSECAGDDIAVSAL 122
           C++AT SG VAG+G+L+ QGTK AE  AVE AGE+ RG TA+LN+EP +C GD  AVSAL
Sbjct: 65  CVIATSSGKVAGEGYLYAQGTKPAEALAVEAAGEFSRGATAYLNMEPGDCHGDHTAVSAL 119

Query: 123 VQ 125
           VQ
Sbjct: 125 VQ 119

[Close]
BLAST of Csa1G655930 vs. Swiss-Prot
Match: RIBRX_MAIZE (Riboflavin biosynthesis protein PYRR, chloroplastic OS=Zea mays GN=PYRR PE=1 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-25
Identity = 56/113 (49.56%), Postives = 77/113 (68.14%), Query Frame = 1 

Query: 19  AAAISTSTTSLSQSQYSLESTFIRRAAEIADKSAGFTAPHPNYGCIVATPS-------GA 78
           A A ++S    S S ++ ++  +RRAA++AD+SAG T+PHPN+GC++A P          
Sbjct: 36  APAAASSFVPASHSSHANDAMLLRRAADVADRSAGLTSPHPNFGCVIARPQLNTDSADSW 95

Query: 79  VAGQGFLFGQGTKSAEVQAVEEAGEYCRGGTAFLNLEPSECAGDDIAVSALVQ 125
           V G+GFL+ QGT  AE+ A +EAGE+ RGGTA+LNLEP +C GD+ AV +LVQ
Sbjct: 96  VVGEGFLYAQGTPCAELLASQEAGEHARGGTAYLNLEPGDCFGDNTAVGSLVQ 148

[Close]
BLAST of Csa1G655930 vs. Swiss-Prot
Match: RIBD_MAIZE (Riboflavin biosynthesis protein PYRD, chloroplastic OS=Zea mays GN=PYRD PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.0e-09
Identity = 37/105 (35.24%), Postives = 58/105 (55.24%), Query Frame = 1 

Query: 6   VPSSPIICFSRPAAAAISTSTTSLSQSQYSLEST-FIRRAAEIADKSAGFTAPHPNYGCI 65
           V ++ +   +RP  AA + S    +Q+   L+   ++RR  E+A K+AG T+P+P  GC+
Sbjct: 16  VRAATLASATRPRLAAGALSGRCQAQAAGDLDDAHYMRRCVELARKAAGHTSPNPMVGCV 75

Query: 66  VATPSGAVAGQGFLFGQGTKSAEVQAVEEAGEYCRGGTAFLNLEP 110
           +    G V G+GF    G   AEV A+ +AG      TA+++LEP
Sbjct: 76  IVR-DGRVVGEGFHPKAGQPHAEVFALRDAGNLAENATAYVSLEP 119

[Close]
BLAST of Csa1G655930 vs. Swiss-Prot
Match: RIBD_HAEIN (Riboflavin biosynthesis protein RibD OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ribD PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.7e-08
Identity = 35/108 (32.41%), Postives = 54/108 (50.00%), Query Frame = 1 

Query: 35  SLESTFIRRAAEIADKSAGFTAPHPNYGCIVATPSGAVAGQGFLFGQGTKSAEVQAVEEA 94
           S +  F++RA ++A K    T P+P+ GC++   +G + G+GF F  G   AE  A+ +A
Sbjct: 6   SQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVK-NGEIVGEGFHFKAGQPHAERVALAQA 65

Query: 95  GEYCRGGTAFLNLEPSECAGD---------DIAVSALVQVRQLPNPSL 134
           GE  +G TA++ LEP    G          +  V  ++   Q PNP +
Sbjct: 66  GENAKGATAYVTLEPCAHYGRTPPCALGLIEAGVVKVIAAMQDPNPQV 112

[Close]
BLAST of Csa1G655930 vs. Swiss-Prot
Match: RIBD_ARATH (Riboflavin biosynthesis protein PYRD, chloroplastic OS=Arabidopsis thaliana GN=PYRD PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.8e-08
Identity = 28/73 (38.36%), Postives = 44/73 (60.27%), Query Frame = 1 

Query: 37  ESTFIRRAAEIADKSAGFTAPHPNYGCIVATPSGAVAGQGFLFGQGTKSAEVQAVEEAGE 96
           +S ++R+  E+A ++ G T+P+P  GC++    G + GQGF    G   AEV A+ +AGE
Sbjct: 74  DSFYMRKCVELAKRAIGCTSPNPMVGCVIVK-DGDIVGQGFHPKAGQPHAEVFALRDAGE 133

Query: 97  YCRGGTAFLNLEP 110
                TA+++LEP
Sbjct: 134 LAENATAYVSLEP 145

[Close]
BLAST of Csa1G655930 vs. TrEMBL
Match: A0A0A0LXT0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G655930 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 1.9e-67
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1 

Query: 1   MIFSLVPSSPIICFSRPAAAAISTSTTSLSQSQYSLESTFIRRAAEIADKSAGFTAPHPN 60
           MIFSLVPSSPIICFSRPAAAAISTSTTSLSQSQYSLESTFIRRAAEIADKSAGFTAPHPN
Sbjct: 1   MIFSLVPSSPIICFSRPAAAAISTSTTSLSQSQYSLESTFIRRAAEIADKSAGFTAPHPN 60

Query: 61  YGCIVATPSGAVAGQGFLFGQGTKSAEVQAVEEAGEYCRGGTAFLNLEPSECAGDDIAVS 120
           YGCIVATPSGAVAGQGFLFGQGTKSAEVQAVEEAGEYCRGGTAFLNLEPSECAGDDIAVS
Sbjct: 61  YGCIVATPSGAVAGQGFLFGQGTKSAEVQAVEEAGEYCRGGTAFLNLEPSECAGDDIAVS 120

Query: 121 ALVQVRQLPNPSL 134
           ALVQVRQLPNPSL
Sbjct: 121 ALVQVRQLPNPSL 133

[Close]
BLAST of Csa1G655930 vs. TrEMBL
Match: A0A0A0M0K4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G655950 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.2e-36
Identity = 82/129 (63.57%), Postives = 102/129 (79.07%), Query Frame = 1 

Query: 1   MIFSLVPSSPIICFSR-----PAAAAISTSTTSLSQSQYSLESTFIRRAAEIADKSAGFT 60
           M+F+L  S PI+  +R      +AAA +T+ +S S + +  E+TFIRRAAEIADKSAGFT
Sbjct: 1   MVFTLGASFPILHANRLPTAVVSAAATTTNPSSNSSTSHLFEATFIRRAAEIADKSAGFT 60

Query: 61  APHPNYGCIVATPSGAVAGQGFLFGQGTKSAEVQAVEEAGEYCRGGTAFLNLEPSECAGD 120
           APHPNYGCI+ T SGAVAG+GFL+GQGT+SAE+QAV+ AGE CRG TAFLNLE S+C  D
Sbjct: 61  APHPNYGCIITTSSGAVAGEGFLYGQGTESAELQAVQAAGERCRGATAFLNLESSDCPSD 120

Query: 121 DIAVSALVQ 125
           + AV+ALVQ
Sbjct: 121 NTAVAALVQ 129

[Close]
BLAST of Csa1G655930 vs. TrEMBL
Match: A0A0D3BHS6_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea GN=PHS1 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 7.0e-30
Identity = 64/117 (54.70%), Postives = 88/117 (75.21%), Query Frame = 1 

Query: 8   SSPIICFSRPAAAAISTSTTSLSQSQYSLESTFIRRAAEIADKSAGFTAPHPNYGCIVAT 67
           SSP+IC           +T    ++ ++ +++FIRRAA++++ SAG T+PHPN+GC++AT
Sbjct: 10  SSPLIC----------RATLDNGRNHHATDASFIRRAADLSEMSAGLTSPHPNFGCVIAT 69

Query: 68  PSGAVAGQGFLFGQGTKSAEVQAVEEAGEYCRGGTAFLNLEPSECAGDDIAVSALVQ 125
           PSG VAG+G+L+ QGTKSAE  AVE AGE+CRG TA+LN+EP +C GD  AVSALVQ
Sbjct: 70  PSGKVAGEGYLYAQGTKSAEALAVEAAGEFCRGSTAYLNMEPGDCHGDHTAVSALVQ 116

[Close]
BLAST of Csa1G655930 vs. TrEMBL
Match: I1N3Z5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G242600 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 9.1e-30
Identity = 61/97 (62.89%), Postives = 82/97 (84.54%), Query Frame = 1 

Query: 28  SLSQSQYSLESTFIRRAAEIADKSAGFTAPHPNYGCIVATPSGAVAGQGFLFGQGTKSAE 87
           SL  + ++L++T+IRRAA +ADKSAGFT+PHPN+GC++ +PSG VAG+G+L+ QGT +AE
Sbjct: 22  SLPTAPHALDATYIRRAAHLADKSAGFTSPHPNFGCVIVSPSGKVAGEGYLYAQGTAAAE 81

Query: 88  VQAVEEAGEYCRGGTAFLNLEPSECAGDDIAVSALVQ 125
           VQAV+ AGE CRG TA+LN+EP +C GD  AVSAL+Q
Sbjct: 82  VQAVKAAGELCRGATAYLNMEPGDCHGDHSAVSALLQ 118

[Close]
BLAST of Csa1G655930 vs. TrEMBL
Match: A0A0R0ID37_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G249800 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.6e-29
Identity = 62/106 (58.49%), Postives = 84/106 (79.25%), Query Frame = 1 

Query: 19  AAAISTSTTSLSQSQYSLESTFIRRAAEIADKSAGFTAPHPNYGCIVATPSGAVAGQGFL 78
           ++ I     SL  + ++L++T+IRRAA +ADKSAGFT+PHPN+GC++ +PSG V+G+G+L
Sbjct: 13  SSVICKCKVSLPTAPHALDATYIRRAAHLADKSAGFTSPHPNFGCVIVSPSGKVSGEGYL 72

Query: 79  FGQGTKSAEVQAVEEAGEYCRGGTAFLNLEPSECAGDDIAVSALVQ 125
           + QGT +AEVQAV  A E CRG TA+LNLEPS+C GD  AVSAL+Q
Sbjct: 73  YAQGTTAAEVQAVASAAELCRGATAYLNLEPSDCHGDHSAVSALLQ 118

[Close]
BLAST of Csa1G655930 vs. TAIR10
Match: AT3G47390.1 (AT3G47390.1 cytidine/deoxycytidylate deaminase family protein)

HSP 1 Score: 131.3 bits (329), Expect = 4.3e-31
Identity = 63/122 (51.64%), Postives = 87/122 (71.31%), Query Frame = 1 

Query: 3   FSLVPSSPIICFSRPAAAAISTSTTSLSQSQYSLESTFIRRAAEIADKSAGFTAPHPNYG 62
           F +  SSP+IC +       + S    S++ ++ ++ FIRRAA++++ SAG T+PHPN+G
Sbjct: 5   FRISSSSPLICRA-------TLSNGDNSRNYHTTDAAFIRRAADLSEMSAGLTSPHPNFG 64

Query: 63  CIVATPSGAVAGQGFLFGQGTKSAEVQAVEEAGEYCRGGTAFLNLEPSECAGDDIAVSAL 122
           C++AT SG VAG+G+L+ QGTK AE  AVE AGE+ RG TA+LN+EP +C GD  AVSAL
Sbjct: 65  CVIATSSGKVAGEGYLYAQGTKPAEALAVEAAGEFSRGATAYLNMEPGDCHGDHTAVSAL 119

Query: 123 VQ 125
           VQ
Sbjct: 125 VQ 119

[Close]
BLAST of Csa1G655930 vs. TAIR10
Match: AT4G20960.1 (AT4G20960.1 Cytidine/deoxycytidylate deaminase family protein)

HSP 1 Score: 58.9 bits (141), Expect = 2.7e-09
Identity = 28/73 (38.36%), Postives = 44/73 (60.27%), Query Frame = 1 

Query: 37  ESTFIRRAAEIADKSAGFTAPHPNYGCIVATPSGAVAGQGFLFGQGTKSAEVQAVEEAGE 96
           +S ++R+  E+A ++ G T+P+P  GC++    G + GQGF    G   AEV A+ +AGE
Sbjct: 74  DSFYMRKCVELAKRAIGCTSPNPMVGCVIVK-DGDIVGQGFHPKAGQPHAEVFALRDAGE 133

Query: 97  YCRGGTAFLNLEP 110
                TA+++LEP
Sbjct: 134 LAENATAYVSLEP 145

[Close]
BLAST of Csa1G655930 vs. NCBI nr
Match: gi|700211569|gb|KGN66665.1| (hypothetical protein Csa_1G655930 [Cucumis sativus])

HSP 1 Score: 263.1 bits (671), Expect = 2.7e-67
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1 

Query: 1   MIFSLVPSSPIICFSRPAAAAISTSTTSLSQSQYSLESTFIRRAAEIADKSAGFTAPHPN 60
           MIFSLVPSSPIICFSRPAAAAISTSTTSLSQSQYSLESTFIRRAAEIADKSAGFTAPHPN
Sbjct: 1   MIFSLVPSSPIICFSRPAAAAISTSTTSLSQSQYSLESTFIRRAAEIADKSAGFTAPHPN 60

Query: 61  YGCIVATPSGAVAGQGFLFGQGTKSAEVQAVEEAGEYCRGGTAFLNLEPSECAGDDIAVS 120
           YGCIVATPSGAVAGQGFLFGQGTKSAEVQAVEEAGEYCRGGTAFLNLEPSECAGDDIAVS
Sbjct: 61  YGCIVATPSGAVAGQGFLFGQGTKSAEVQAVEEAGEYCRGGTAFLNLEPSECAGDDIAVS 120

Query: 121 ALVQVRQLPNPSL 134
           ALVQVRQLPNPSL
Sbjct: 121 ALVQVRQLPNPSL 133

[Close]
BLAST of Csa1G655930 vs. NCBI nr
Match: gi|778664102|ref|XP_011660221.1| (PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 245.4 bits (625), Expect = 5.8e-62
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1 

Query: 1   MIFSLVPSSPIICFSRPAAAAISTSTTSLSQSQYSLESTFIRRAAEIADKSAGFTAPHPN 60
           MIFSLVPSSPIICFSRPAAAAISTSTTSLSQSQYSLESTFIRRAAEIADKSAGFTAPHPN
Sbjct: 1   MIFSLVPSSPIICFSRPAAAAISTSTTSLSQSQYSLESTFIRRAAEIADKSAGFTAPHPN 60

Query: 61  YGCIVATPSGAVAGQGFLFGQGTKSAEVQAVEEAGEYCRGGTAFLNLEPSECAGDDIAVS 120
           YGCIVATPSGAVAGQGFLFGQGTKSAEVQAVEEAGEYCRGGTAFLNLEPSECAGDDIAVS
Sbjct: 61  YGCIVATPSGAVAGQGFLFGQGTKSAEVQAVEEAGEYCRGGTAFLNLEPSECAGDDIAVS 120

Query: 121 ALVQ 125
           ALVQ
Sbjct: 121 ALVQ 124

[Close]
BLAST of Csa1G655930 vs. NCBI nr
Match: gi|659085938|ref|XP_008443687.1| (PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic-like [Cucumis melo])

HSP 1 Score: 231.5 bits (589), Expect = 8.7e-58
Identity = 117/124 (94.35%), Postives = 120/124 (96.77%), Query Frame = 1 

Query: 1   MIFSLVPSSPIICFSRPAAAAISTSTTSLSQSQYSLESTFIRRAAEIADKSAGFTAPHPN 60
           MIFSLVPSSPIICFSRPAAAAISTST+SLSQ QYSLESTFIRRAAEIADKSAGFTAPHPN
Sbjct: 1   MIFSLVPSSPIICFSRPAAAAISTSTSSLSQYQYSLESTFIRRAAEIADKSAGFTAPHPN 60

Query: 61  YGCIVATPSGAVAGQGFLFGQGTKSAEVQAVEEAGEYCRGGTAFLNLEPSECAGDDIAVS 120
           YGCIVAT SG +AG+GFLFGQGTKSAEVQAVEEAGEYCRGGTAFLNLE SECAGDDIAVS
Sbjct: 61  YGCIVATASGDIAGEGFLFGQGTKSAEVQAVEEAGEYCRGGTAFLNLESSECAGDDIAVS 120

Query: 121 ALVQ 125
           ALVQ
Sbjct: 121 ALVQ 124

[Close]
BLAST of Csa1G655930 vs. NCBI nr
Match: gi|449442795|ref|XP_004139166.1| (PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic [Cucumis sativus])

HSP 1 Score: 159.8 bits (403), Expect = 3.2e-36
Identity = 82/129 (63.57%), Postives = 102/129 (79.07%), Query Frame = 1 

Query: 1   MIFSLVPSSPIICFSR-----PAAAAISTSTTSLSQSQYSLESTFIRRAAEIADKSAGFT 60
           M+F+L  S PI+  +R      +AAA +T+ +S S + +  E+TFIRRAAEIADKSAGFT
Sbjct: 1   MVFTLGASFPILHANRLPTAVVSAAATTTNPSSNSSTSHLFEATFIRRAAEIADKSAGFT 60

Query: 61  APHPNYGCIVATPSGAVAGQGFLFGQGTKSAEVQAVEEAGEYCRGGTAFLNLEPSECAGD 120
           APHPNYGCI+ T SGAVAG+GFL+GQGT+SAE+QAV+ AGE CRG TAFLNLE S+C  D
Sbjct: 61  APHPNYGCIITTSSGAVAGEGFLYGQGTESAELQAVQAAGERCRGATAFLNLESSDCPSD 120

Query: 121 DIAVSALVQ 125
           + AV+ALVQ
Sbjct: 121 NTAVAALVQ 129

[Close]
BLAST of Csa1G655930 vs. NCBI nr
Match: gi|659085940|ref|XP_008443689.1| (PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic-like [Cucumis melo])

HSP 1 Score: 153.7 bits (387), Expect = 2.3e-34
Identity = 80/129 (62.02%), Postives = 100/129 (77.52%), Query Frame = 1 

Query: 1   MIFSLVPSSPIICFSR-----PAAAAISTSTTSLSQSQYSLESTFIRRAAEIADKSAGFT 60
           M+F+L  S PI+  +R      +AAA +T+ +S S + +  E+TFIRRAAEIADKSAGFT
Sbjct: 1   MVFTLGASLPILHANRLPTPVVSAAATTTNPSSNSSTSHLFEATFIRRAAEIADKSAGFT 60

Query: 61  APHPNYGCIVATPSGAVAGQGFLFGQGTKSAEVQAVEEAGEYCRGGTAFLNLEPSECAGD 120
           APHPNYGCI+ T SG VAG+GFL+GQGT+SAE+QAV+ AGE CRG TAFLNLE S+   D
Sbjct: 61  APHPNYGCIITTSSGDVAGEGFLYGQGTESAELQAVQAAGERCRGATAFLNLESSDSPSD 120

Query: 121 DIAVSALVQ 125
           + AV+ALVQ
Sbjct: 121 NTAVAALVQ 129

The following BLAST results are available for this feature:
BLAST of Csa1G655930 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RIBRX_ARATH7.7e-3051.64Riboflavin biosynthesis protein PYRR, chloroplastic OS=Arabidopsis thaliana GN=P... [more]
RIBRX_MAIZE1.1e-2549.56Riboflavin biosynthesis protein PYRR, chloroplastic OS=Zea mays GN=PYRR PE=1 SV=... [more]
RIBD_MAIZE2.0e-0935.24Riboflavin biosynthesis protein PYRD, chloroplastic OS=Zea mays GN=PYRD PE=2 SV=... [more]
RIBD_HAEIN1.7e-0832.41Riboflavin biosynthesis protein RibD OS=Haemophilus influenzae (strain ATCC 5190... [more]
RIBD_ARATH4.8e-0838.36Riboflavin biosynthesis protein PYRD, chloroplastic OS=Arabidopsis thaliana GN=P... [more]
BLAST of Csa1G655930 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LXT0_CUCSA1.9e-67100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G655930 PE=4 SV=1[more]
A0A0A0M0K4_CUCSA2.2e-3663.57Uncharacterized protein OS=Cucumis sativus GN=Csa_1G655950 PE=4 SV=1[more]
A0A0D3BHS6_BRAOL7.0e-3054.70Uncharacterized protein OS=Brassica oleracea var. oleracea GN=PHS1 PE=4 SV=1[more]
I1N3Z5_SOYBN9.1e-3062.89Uncharacterized protein OS=Glycine max GN=GLYMA_18G242600 PE=4 SV=1[more]
A0A0R0ID37_SOYBN1.6e-2958.49Uncharacterized protein OS=Glycine max GN=GLYMA_09G249800 PE=4 SV=1[more]
BLAST of Csa1G655930 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G47390.14.3e-3151.64 cytidine/deoxycytidylate deaminase family protein[more]
AT4G20960.12.7e-0938.36 Cytidine/deoxycytidylate deaminase family protein[more]
BLAST of Csa1G655930 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211569|gb|KGN66665.1|2.7e-67100.00hypothetical protein Csa_1G655930 [Cucumis sativus][more]
gi|778664102|ref|XP_011660221.1|5.8e-62100.00PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic-like [Cucumis sat... [more]
gi|659085938|ref|XP_008443687.1|8.7e-5894.35PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic-like [Cucumis mel... [more]
gi|449442795|ref|XP_004139166.1|3.2e-3663.57PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic [Cucumis sativus][more]
gi|659085940|ref|XP_008443689.1|2.3e-3462.02PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic-like [Cucumis mel... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002125CMP_dCMP_dom
IPR016193Cytidine_deaminase-like
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003824catalytic activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009658 chloroplast organization
biological_process GO:0046443 FAD metabolic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0009644 response to high light intensity
biological_process GO:0009231 riboflavin biosynthetic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity
molecular_function GO:0008835 diaminohydroxyphosphoribosylaminopyrimidine deaminase activity
molecular_function GO:0050661 NADP binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003824 catalytic activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G655930.1Csa1G655930.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002125Cytidine and deoxycytidylate deaminases, zinc-bindingPROFILEPS51747CYT_DCMP_DEAMINASES_2coord: 35..133
score: 10
IPR016193Cytidine deaminase-likeunknownSSF53927Cytidine deaminase-likecoord: 38..114
score: 3.91
NoneNo IPR availableGENE3DG3DSA:3.40.140.10coord: 31..113
score: 4.
NoneNo IPR availablePANTHERPTHR11079CYTOSINE DEAMINASEcoord: 1..124
score: 1.3
NoneNo IPR availablePANTHERPTHR11079:SF76SUBFAMILY NOT NAMEDcoord: 1..124
score: 1.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G655930MELO3C010049Melon (DHL92) v3.5.1cumeB043
Csa1G655930Bhi02G001089Wax gourdcuwgoB110
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G655930Watermelon (Charleston Gray)cuwcgB038
Csa1G655930Watermelon (97103) v1cuwmB011
Csa1G655930Cucurbita pepo (Zucchini)cpecuB000
Csa1G655930Cucurbita pepo (Zucchini)cpecuB349
Csa1G655930Bottle gourd (USVL1VR-Ls)culsiB058
Csa1G655930Cucumber (Gy14) v2cgybcuB002
Csa1G655930Melon (DHL92) v3.6.1cumedB035
Csa1G655930Silver-seed gourdcarcuB0565
Csa1G655930Silver-seed gourdcarcuB0982
Csa1G655930Watermelon (97103) v2cuwmbB035
Csa1G655930Wax gourdcuwgoB090
Csa1G655930Cucumber (Gy14) v1cgycuB500
Csa1G655930Cucurbita maxima (Rimu)cmacuB057
Csa1G655930Cucurbita maxima (Rimu)cmacuB085
Csa1G655930Cucurbita moschata (Rifu)cmocuB075
Csa1G655930Cucurbita moschata (Rifu)cmocuB047