Csa1G653310 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G653310
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Vacuolar protein sorting-associated protein, putative
Location	Chr1 : 26049043 .. 26049237 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTGTATATCACAGTTCACCTAACTTCTTATACTGTAGGTATGGAAGATTTCGCCCCTGGTGCTTCCCCCTTTCAAGGAAGGTGAAGGGTTGGCAAATGTTATGGTGGCATTATGCACAACAATCTGTCTTGTTAGATGTACGAAAAAGATTGAAGAAATGTTCATGGAGATATCTTGGACAGAGACTGTAA

mRNA sequence

ATGCCTGTATATCACAGTTCACCTAACTTCTTATACTGTAGGTATGGAAGATTTCGCCCCTGGTGCTTCCCCCTTTCAAGGAAGGTGAAGGGTTGGCAAATGTTATGGTGGCATTATGCACAACAATCTGTCTTGTTAGATGTACGAAAAAGATTGAAGAAATGTTCATGGAGATATCTTGGACAGAGACTGTAA

Coding sequence (CDS)

ATGCCTGTATATCACAGTTCACCTAACTTCTTATACTGTAGGTATGGAAGATTTCGCCCCTGGTGCTTCCCCCTTTCAAGGAAGGTGAAGGGTTGGCAAATGTTATGGTGGCATTATGCACAACAATCTGTCTTGTTAGATGTACGAAAAAGATTGAAGAAATGTTCATGGAGATATCTTGGACAGAGACTGTAA

Protein sequence

MPVYHSSPNFLYCRYGRFRPWCFPLSRKVKGWQMLWWHYAQQSVLLDVRKRLKKCSWRYLGQRL*

Homology

[Close]

BLAST of Csa1G653310 vs. TrEMBL
Match: A0A0A0LXR7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G653310 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 1.5e-33
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1


Query: 1  MPVYHSSPNFLYCRYGRFRPWCFPLSRKVKGWQMLWWHYAQQSVLLDVRKRLKKCSWRYL 60
          MPVYHSSPNFLYCRYGRFRPWCFPLSRKVKGWQMLWWHYAQQSVLLDVRKRLKKCSWRYL
Sbjct: 1  MPVYHSSPNFLYCRYGRFRPWCFPLSRKVKGWQMLWWHYAQQSVLLDVRKRLKKCSWRYL 60

Query: 61 GQRL 65
          GQRL
Sbjct: 61 GQRL 64

[Close]

BLAST of Csa1G653310 vs. TrEMBL
Match: A0A0J8E8T0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g023160 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 6.6e-18
Identity = 39/51 (76.47%), Postives = 47/51 (92.16%), Query Frame = 1


Query: 14  RYGRFRPWCFPLSRKVKGWQMLWWHYAQQSVLLDVRKRLKKCSWRYLGQRL 65
           +YGR+RPW +PLS+K+KGWQ +WWHYAQ+SVL DVRK+LKK SWRYLGQRL
Sbjct: 301 KYGRYRPWDYPLSKKLKGWQKIWWHYAQESVLSDVRKKLKKTSWRYLGQRL 351

[Close]

BLAST of Csa1G653310 vs. TrEMBL
Match: A0A0J8BF12_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g023160 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 6.6e-18
Identity = 39/51 (76.47%), Postives = 47/51 (92.16%), Query Frame = 1


Query: 14  RYGRFRPWCFPLSRKVKGWQMLWWHYAQQSVLLDVRKRLKKCSWRYLGQRL 65
           +YGR+RPW +PLS+K+KGWQ +WWHYAQ+SVL DVRK+LKK SWRYLGQRL
Sbjct: 301 KYGRYRPWDYPLSKKLKGWQKIWWHYAQESVLSDVRKKLKKTSWRYLGQRL 351

[Close]

BLAST of Csa1G653310 vs. TrEMBL
Match: A0A0J8BHK2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g023160 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 6.6e-18
Identity = 39/51 (76.47%), Postives = 47/51 (92.16%), Query Frame = 1


Query: 14  RYGRFRPWCFPLSRKVKGWQMLWWHYAQQSVLLDVRKRLKKCSWRYLGQRL 65
           +YGR+RPW +PLS+K+KGWQ +WWHYAQ+SVL DVRK+LKK SWRYLGQRL
Sbjct: 301 KYGRYRPWDYPLSKKLKGWQKIWWHYAQESVLSDVRKKLKKTSWRYLGQRL 351

[Close]

BLAST of Csa1G653310 vs. TrEMBL
Match: A0A0D2VUJ9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G024100 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.6e-16
Identity = 38/51 (74.51%), Postives = 44/51 (86.27%), Query Frame = 1


Query: 14  RYGRFRPWCFPLSRKVKGWQMLWWHYAQQSVLLDVRKRLKKCSWRYLGQRL 65
           +YGR+RPW  PLSRK  GWQ LWWHYAQ+S+L DVR++LKK SWRYLGQRL
Sbjct: 300 KYGRYRPWSSPLSRKEDGWQRLWWHYAQESILSDVREKLKKTSWRYLGQRL 350

[Close]

BLAST of Csa1G653310 vs. TAIR10
Match: AT5G24740.1 (AT5G24740.1 Protein of unknown function (DUF1162))

HSP 1 Score: 56.2 bits (134), Expect = 8.6e-09
Identity = 24/34 (70.59%), Postives = 23/34 (67.65%), Query Frame = 1


Query: 14  RYGRFRPWCFPLSRKVKGWQMLWWHYAQQSVLLD 48
           RYGR+RP    LSRK  GWQ LWWHYAQ SVL D
Sbjct: 308 RYGRYRPCSTSLSRKPPGWQKLWWHYAQNSVLSD 341

[Close]

BLAST of Csa1G653310 vs. NCBI nr
Match: gi|700211554|gb|KGN66650.1| (hypothetical protein Csa_1G653310 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 2.1e-33
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 1


Query: 1  MPVYHSSPNFLYCRYGRFRPWCFPLSRKVKGWQMLWWHYAQQSVLLDVRKRLKKCSWRYL 60
          MPVYHSSPNFLYCRYGRFRPWCFPLSRKVKGWQMLWWHYAQQSVLLDVRKRLKKCSWRYL
Sbjct: 1  MPVYHSSPNFLYCRYGRFRPWCFPLSRKVKGWQMLWWHYAQQSVLLDVRKRLKKCSWRYL 60

Query: 61 GQRL 65
          GQRL
Sbjct: 61 GQRL 64

[Close]

BLAST of Csa1G653310 vs. NCBI nr
Match: gi|778664064|ref|XP_011660209.1| (PREDICTED: uncharacterized protein LOC101204937 isoform X1 [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 5.2e-24
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1


Query: 14  RYGRFRPWCFPLSRKVKGWQMLWWHYAQQSVLLDVRKRLKKCSWRYLGQRL 65
           +YGRFRPWCFPLSRKVKGWQMLWWHYAQQSVLLDVRKRLKKCSWRYLGQRL
Sbjct: 298 KYGRFRPWCFPLSRKVKGWQMLWWHYAQQSVLLDVRKRLKKCSWRYLGQRL 348

[Close]

BLAST of Csa1G653310 vs. NCBI nr
Match: gi|778664067|ref|XP_011660210.1| (PREDICTED: uncharacterized protein LOC101204937 isoform X2 [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 5.2e-24
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1


Query: 14  RYGRFRPWCFPLSRKVKGWQMLWWHYAQQSVLLDVRKRLKKCSWRYLGQRL 65
           +YGRFRPWCFPLSRKVKGWQMLWWHYAQQSVLLDVRKRLKKCSWRYLGQRL
Sbjct: 298 KYGRFRPWCFPLSRKVKGWQMLWWHYAQQSVLLDVRKRLKKCSWRYLGQRL 348

[Close]

BLAST of Csa1G653310 vs. NCBI nr
Match: gi|659085896|ref|XP_008443663.1| (PREDICTED: putative vacuolar protein sorting-associated protein 13A [Cucumis melo])

HSP 1 Score: 112.8 bits (281), Expect = 2.2e-22
Identity = 47/51 (92.16%), Postives = 50/51 (98.04%), Query Frame = 1


Query: 14  RYGRFRPWCFPLSRKVKGWQMLWWHYAQQSVLLDVRKRLKKCSWRYLGQRL 65
           +YGRFRPWC PLSRKVKGWQMLWWHYAQQSVLLDVRK+LKKCSW+YLGQRL
Sbjct: 298 KYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL 348

[Close]

BLAST of Csa1G653310 vs. NCBI nr
Match: gi|870847063|gb|KMS99507.1| (hypothetical protein BVRB_1g023160 isoform C [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 97.4 bits (241), Expect = 9.5e-18
Identity = 39/51 (76.47%), Postives = 47/51 (92.16%), Query Frame = 1


Query: 14  RYGRFRPWCFPLSRKVKGWQMLWWHYAQQSVLLDVRKRLKKCSWRYLGQRL 65
           +YGR+RPW +PLS+K+KGWQ +WWHYAQ+SVL DVRK+LKK SWRYLGQRL
Sbjct: 301 KYGRYRPWDYPLSKKLKGWQKIWWHYAQESVLSDVRKKLKKTSWRYLGQRL 351

The following BLAST results are available for this feature:

BLAST of Csa1G653310 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXR7_CUCSA	1.5e-33	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G653310 PE=4 SV=1	[more]
A0A0J8E8T0_BETVU	6.6e-18	76.47	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g023160 PE=4 S...	[more]
A0A0J8BF12_BETVU	6.6e-18	76.47	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g023160 PE=4 S...	[more]
A0A0J8BHK2_BETVU	6.6e-18	76.47	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g023160 PE=4 S...	[more]
A0A0D2VUJ9_GOSRA	1.6e-16	74.51	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G024100 PE=4 SV=1	[more]

BLAST of Csa1G653310 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G24740.1	8.6e-09	70.59	Protein of unknown function (DUF1162)	[more]

BLAST of Csa1G653310 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700211554\|gb\|KGN66650.1\|	2.1e-33	100.00	hypothetical protein Csa_1G653310 [Cucumis sativus]	[more]
gi\|778664064\|ref\|XP_011660209.1\|	5.2e-24	98.04	PREDICTED: uncharacterized protein LOC101204937 isoform X1 [Cucumis sativus]	[more]
gi\|778664067\|ref\|XP_011660210.1\|	5.2e-24	98.04	PREDICTED: uncharacterized protein LOC101204937 isoform X2 [Cucumis sativus]	[more]
gi\|659085896\|ref\|XP_008443663.1\|	2.2e-22	92.16	PREDICTED: putative vacuolar protein sorting-associated protein 13A [Cucumis mel...	[more]
gi\|870847063\|gb\|KMS99507.1\|	9.5e-18	76.47	hypothetical protein BVRB_1g023160 isoform C [Beta vulgaris subsp. vulgaris]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU152923	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G653310.1	Csa1G653310.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU152923	CU152923	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G653310	Lsi06G006810	Bottle gourd (USVL1VR-Ls)	culsiB058
Csa1G653310	MELO3C010033.2	Melon (DHL92) v3.6.1	cumedB035
Csa1G653310	Cla97C03G061100	Watermelon (97103) v2	cuwmbB035

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G653310	Silver-seed gourd	carcuB0565
Csa1G653310	Silver-seed gourd	carcuB0982
Csa1G653310	Wax gourd	cuwgoB110
Csa1G653310	Cucumber (Gy14) v1	cgycuB500
Csa1G653310	Cucurbita maxima (Rimu)	cmacuB057
Csa1G653310	Cucurbita maxima (Rimu)	cmacuB085
Csa1G653310	Cucurbita moschata (Rifu)	cmocuB075
Csa1G653310	Cucurbita moschata (Rifu)	cmocuB047
Csa1G653310	Melon (DHL92) v3.5.1	cumeB043
Csa1G653310	Watermelon (Charleston Gray)	cuwcgB038
Csa1G653310	Watermelon (97103) v1	cuwmB011
Csa1G653310	Cucurbita pepo (Zucchini)	cpecuB000
Csa1G653310	Cucurbita pepo (Zucchini)	cpecuB349
Csa1G653310	Cucumber (Gy14) v2	cgybcuB002