Csa1G600240 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G600240
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 23179803 .. 23181100 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAAAAATCAGGACCCATACACATTTATACAAACTCCCAATTACCTCAAATCCCCGTCGCTTTATTCGTTGCAACTTCATTTCATTTGATTTTTCTGTTTTTAGACGAATCCATGGACTGGTGTTCTCACTGTCTCGAGGTTTGTACAATCCAAATCGATGGCAATTTCAGGTACCTTTAACAGTTACTTCTCTTTCTTCTTCTTCTTCTTCTTCTTTTCATTCGATTGTTATGAATTTCAAAGTTACTTTTAGTTGAATTTCTGAATTGGGATATAATTGTTGTTGGAATCTCAATGTTGAGTCAATTTGTTTTTCTGTGATTTTACGTTTCATTTGCTTTTAGAATTTTTTCGTGATTAGACTGATTTTTTTTTTTTTTGTTGAAAATTTGGTTACCAAAGTCTAAAATATTATATTCTTAATCCTTAAATTTGATTTCAATTTACTCGTTGTGTTTCAATTTGATCTACGTTGCTCAAGTTTAATTTTGATCTGTAATTTTCTCTAAATGCTACTGACTTAGTGTTAACATAGAATTATAATTAATTACATTCTATCAACTATTTTAGTTGACTTAAATGGTTGTTGGGTGAATGAAAAATAAAATCACAAGAGCTTATACTATTGCAAAAATGTTTGGAAGCTATTAGCAAATGGTATCAAAGTCATTCTCCCATCTTATCACCTTGGACAGAATCCTCAACAATCCAAAGAAGTGGTGAGCCTCAGAAAACTAATAATCATTGTGTGATGTGGTCGAGCTCCATCATATAGGCAATGTGCTCCAATAAAAGGAGTTAACATAGATGAGAGTAGGAAAATGATTAAATAAAATAAACTAACATATGTATTTAGGTGATAAGTACTATATAATAAACCCACAAGAGTGTATATCTTTGTCAAGGGTTAGGGTTATCTCTATAAATGTCTTCACCTTTTAACTTAGACTATGCTCGTCTCGACAAATATTATAGAGGGGGTTTGATCACATATTTTCAAGTAGCATCGATCCCCTTTTTTCCTTTTAAGTTGTCTTTCTTATAAAAGTATATAAACAAAAAGTTGATATTTGATATTGTTTTTTAATGAACAATTCGCAAATCTTGATTGCAGATGTTGCTCAACATGTGGAAAAGTGCTTGCACAAAGTTCTACCGCCAAATCACCGAACTTAAAGCTCATAAAAAAAAAATTTAAAAGAAACTTCATTTCTCATCAGAAGAAAATTAGGAAAGAACTTCTTAAATTAGCACAACTCTCTAATACGACTTAGATTTTCATTTCCCAATTCAA

mRNA sequence

ATGCCAAAAATCAGGACCCATACACATTTATACAAACTCCCAATTACCTCAAATCCCCGTCGCTTTATTCGTTGCAACTTCATTTCATTTGATTTTTCTGTTTTTAGACGAATCCATGGACTGGTGTTCTCACTGTCTCGAGGTTTGTACAATCCAAATCGATGGCAATTTCAGATGTTGCTCAACATGTGGAAAAGTGCTTGCACAAAGTTCTACCGCCAAATCACCGAACTTAAAGCTCATAAAAAAAAAATTTAA

Coding sequence (CDS)

ATGCCAAAAATCAGGACCCATACACATTTATACAAACTCCCAATTACCTCAAATCCCCGTCGCTTTATTCGTTGCAACTTCATTTCATTTGATTTTTCTGTTTTTAGACGAATCCATGGACTGGTGTTCTCACTGTCTCGAGGTTTGTACAATCCAAATCGATGGCAATTTCAGATGTTGCTCAACATGTGGAAAAGTGCTTGCACAAAGTTCTACCGCCAAATCACCGAACTTAAAGCTCATAAAAAAAAAATTTAA

Protein sequence

MPKIRTHTHLYKLPITSNPRRFIRCNFISFDFSVFRRIHGLVFSLSRGLYNPNRWQFQMLLNMWKSACTKFYRQITELKAHKKKI*
Homology
[Close]
BLAST of Csa1G600240 vs. TrEMBL
Match: A0A0A0LZB8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G600240 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.1e-43
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1 

Query: 1  MPKIRTHTHLYKLPITSNPRRFIRCNFISFDFSVFRRIHGLVFSLSRGLYNPNRWQFQML 60
          MPKIRTHTHLYKLPITSNPRRFIRCNFISFDFSVFRRIHGLVFSLSRGLYNPNRWQFQML
Sbjct: 1  MPKIRTHTHLYKLPITSNPRRFIRCNFISFDFSVFRRIHGLVFSLSRGLYNPNRWQFQML 60

Query: 61 LNMWKSACTKFYRQITELKAHKKKI 86
          LNMWKSACTKFYRQITELKAHKKKI
Sbjct: 61 LNMWKSACTKFYRQITELKAHKKKI 85

[Close]
BLAST of Csa1G600240 vs. NCBI nr
Match: gi|700211288|gb|KGN66384.1| (hypothetical protein Csa_1G600240 [Cucumis sativus])

HSP 1 Score: 182.6 bits (462), Expect = 3.0e-43
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1 

Query: 1  MPKIRTHTHLYKLPITSNPRRFIRCNFISFDFSVFRRIHGLVFSLSRGLYNPNRWQFQML 60
          MPKIRTHTHLYKLPITSNPRRFIRCNFISFDFSVFRRIHGLVFSLSRGLYNPNRWQFQML
Sbjct: 1  MPKIRTHTHLYKLPITSNPRRFIRCNFISFDFSVFRRIHGLVFSLSRGLYNPNRWQFQML 60

Query: 61 LNMWKSACTKFYRQITELKAHKKKI 86
          LNMWKSACTKFYRQITELKAHKKKI
Sbjct: 61 LNMWKSACTKFYRQITELKAHKKKI 85

The following BLAST results are available for this feature:
BLAST of Csa1G600240 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LZB8_CUCSA2.1e-43100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G600240 PE=4 SV=1[more]
BLAST of Csa1G600240 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211288|gb|KGN66384.1|3.0e-43100.00hypothetical protein Csa_1G600240 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009086 methionine biosynthetic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity
molecular_function GO:0008270 zinc ion binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU104488cucumber EST collection version 3.0transcribed_cluster
CU161342cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G600240.1Csa1G600240.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU104488CU104488transcribed_cluster
CU161342CU161342transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G600240Bottle gourd (USVL1VR-Ls)culsiB058
Csa1G600240Cucumber (Gy14) v2cgybcuB002
Csa1G600240Melon (DHL92) v3.6.1cumedB033
Csa1G600240Silver-seed gourdcarcuB0015
Csa1G600240Silver-seed gourdcarcuB0192
Csa1G600240Watermelon (97103) v2cuwmbB042
Csa1G600240Wax gourdcuwgoB094
Csa1G600240Cucumber (Gy14) v1cgycuB205
Csa1G600240Cucurbita maxima (Rimu)cmacuB057
Csa1G600240Cucurbita maxima (Rimu)cmacuB085
Csa1G600240Cucurbita moschata (Rifu)cmocuB075
Csa1G600240Cucurbita moschata (Rifu)cmocuB047
Csa1G600240Melon (DHL92) v3.5.1cumeB041
Csa1G600240Watermelon (Charleston Gray)cuwcgB046
Csa1G600240Watermelon (97103) v1cuwmB020
Csa1G600240Cucurbita pepo (Zucchini)cpecuB349
Csa1G600240Cucurbita pepo (Zucchini)cpecuB652