Csa1G537550 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G537550
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 19588443 .. 19588954 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCGAACTTGACTCATGGTGCACTGGATGCCTTTTCACATACGGTATGGTAATGTTACTGAGTTATATAACTTATAAGTTTGTTGATGGGATTTCTAGATCTACCTTGATCGAATTTGAGATGCAGTTTTATTTGAATTTGGCACTTGAAAATTATGTAATTTCTGGTTCAATATTTTTGTATAGGAAGGGGCTTTCTCAACCCTATATTCTCCGTATAACAGTCTGGAATTCCATGGAATTGAAAGCTATATCCAACTGCAGATTGGGTACGAGGCTTTTGCAGCTGGTCATTTTTGCGCCTTCATGATATTTAAACGGATCACATTATTGGTATAAGGTTTGTCTTTCTTTCTTAAAATTATTTCAGGAAGTGATATCTTATTTTTTCACCGTCCTTTATTTTCCACTGACCATCAAACAATCCTTCTCACTCAGTTTGGTGGAGTAGCTGCTCCTTCTCAATGGCGAAAGCTTAAGAGAAACAATAGTCTTCAACAACCAAGATAG

mRNA sequence

ATGTTCGAACTTGACTCATGGTGCACTGGATGCCTTTTCACATACGGTATGGAAGGGGCTTTCTCAACCCTATATTCTCCGTATAACAGTCTGGAATTCCATGGAATTGAAAGCTATATCCAACTGCAGATTGGGTACGAGGCTTTTGCAGCTGGTCATTTTTGCGCCTTCATGATATTTAAACGGATCACATTATTGTTTGGTGGAGTAGCTGCTCCTTCTCAATGGCGAAAGCTTAAGAGAAACAATAGTCTTCAACAACCAAGATAG

Coding sequence (CDS)

ATGTTCGAACTTGACTCATGGTGCACTGGATGCCTTTTCACATACGGTATGGAAGGGGCTTTCTCAACCCTATATTCTCCGTATAACAGTCTGGAATTCCATGGAATTGAAAGCTATATCCAACTGCAGATTGGGTACGAGGCTTTTGCAGCTGGTCATTTTTGCGCCTTCATGATATTTAAACGGATCACATTATTGTTTGGTGGAGTAGCTGCTCCTTCTCAATGGCGAAAGCTTAAGAGAAACAATAGTCTTCAACAACCAAGATAG

Protein sequence

MFELDSWCTGCLFTYGMEGAFSTLYSPYNSLEFHGIESYIQLQIGYEAFAAGHFCAFMIFKRITLLFGGVAAPSQWRKLKRNNSLQQPR*
Homology
[Close]
BLAST of Csa1G537550 vs. TrEMBL
Match: A0A0A0LYI2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G537550 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 8.0e-46
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1 

Query: 1  MFELDSWCTGCLFTYGMEGAFSTLYSPYNSLEFHGIESYIQLQIGYEAFAAGHFCAFMIF 60
          MFELDSWCTGCLFTYGMEGAFSTLYSPYNSLEFHGIESYIQLQIGYEAFAAGHFCAFMIF
Sbjct: 1  MFELDSWCTGCLFTYGMEGAFSTLYSPYNSLEFHGIESYIQLQIGYEAFAAGHFCAFMIF 60

Query: 61 KRITLLFGGVAAPSQWRKLKRNNSLQQPR 90
          KRITLLFGGVAAPSQWRKLKRNNSLQQPR
Sbjct: 61 KRITLLFGGVAAPSQWRKLKRNNSLQQPR 89

[Close]
BLAST of Csa1G537550 vs. NCBI nr
Match: gi|700210811|gb|KGN65907.1| (hypothetical protein Csa_1G537550 [Cucumis sativus])

HSP 1 Score: 190.7 bits (483), Expect = 1.1e-45
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1 

Query: 1  MFELDSWCTGCLFTYGMEGAFSTLYSPYNSLEFHGIESYIQLQIGYEAFAAGHFCAFMIF 60
          MFELDSWCTGCLFTYGMEGAFSTLYSPYNSLEFHGIESYIQLQIGYEAFAAGHFCAFMIF
Sbjct: 1  MFELDSWCTGCLFTYGMEGAFSTLYSPYNSLEFHGIESYIQLQIGYEAFAAGHFCAFMIF 60

Query: 61 KRITLLFGGVAAPSQWRKLKRNNSLQQPR 90
          KRITLLFGGVAAPSQWRKLKRNNSLQQPR
Sbjct: 61 KRITLLFGGVAAPSQWRKLKRNNSLQQPR 89

The following BLAST results are available for this feature:
BLAST of Csa1G537550 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYI2_CUCSA8.0e-46100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G537550 PE=4 SV=1[more]
BLAST of Csa1G537550 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210811|gb|KGN65907.1|1.1e-45100.00hypothetical protein Csa_1G537550 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G537550.1Csa1G537550.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G537550CsGy1G024260Cucumber (Gy14) v2cgybcuB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G537550Cucumber (Gy14) v1cgycuB018
Csa1G537550Cucumber (Gy14) v1cgycuB255
Csa1G537550Cucurbita maxima (Rimu)cmacuB208
Csa1G537550Cucurbita maxima (Rimu)cmacuB220
Csa1G537550Cucurbita maxima (Rimu)cmacuB392
Csa1G537550Cucurbita maxima (Rimu)cmacuB401
Csa1G537550Cucurbita moschata (Rifu)cmocuB193
Csa1G537550Cucurbita moschata (Rifu)cmocuB205
Csa1G537550Cucurbita moschata (Rifu)cmocuB381
Csa1G537550Cucurbita moschata (Rifu)cmocuB388
Csa1G537550Melon (DHL92) v3.5.1cumeB018
Csa1G537550Melon (DHL92) v3.5.1cumeB081
Csa1G537550Watermelon (Charleston Gray)cuwcgB027
Csa1G537550Watermelon (Charleston Gray)cuwcgB049
Csa1G537550Watermelon (Charleston Gray)cuwcgB054
Csa1G537550Watermelon (97103) v1cuwmB027
Csa1G537550Watermelon (97103) v1cuwmB025
Csa1G537550Watermelon (97103) v1cuwmB058
Csa1G537550Cucurbita pepo (Zucchini)cpecuB030
Csa1G537550Cucurbita pepo (Zucchini)cpecuB022
Csa1G537550Cucurbita pepo (Zucchini)cpecuB508
Csa1G537550Cucurbita pepo (Zucchini)cpecuB519
Csa1G537550Bottle gourd (USVL1VR-Ls)culsiB018
Csa1G537550Bottle gourd (USVL1VR-Ls)culsiB023
Csa1G537550Bottle gourd (USVL1VR-Ls)culsiB034
Csa1G537550Cucumber (Gy14) v2cgybcuB245
Csa1G537550Melon (DHL92) v3.6.1cumedB013
Csa1G537550Melon (DHL92) v3.6.1cumedB076
Csa1G537550Silver-seed gourdcarcuB0428
Csa1G537550Silver-seed gourdcarcuB0453
Csa1G537550Silver-seed gourdcarcuB0455
Csa1G537550Watermelon (97103) v2cuwmbB014
Csa1G537550Watermelon (97103) v2cuwmbB045
Csa1G537550Watermelon (97103) v2cuwmbB048
Csa1G537550Wax gourdcuwgoB039
Csa1G537550Wax gourdcuwgoB025
Csa1G537550Cucumber (Chinese Long) v2cucuB040