Csa1G418770 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G418770
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 15155109 .. 15155465 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGCAATTGAAACTAAGTACTTTGGAGCTGGAAATCAAAATCAAGACAGCTCAAACTCATCCTCAGATGGTCCATGTTTAGAGGTGTCGAGCTTTGGGGGCCTTTTTATAATCACTGGGATAGCATTCCTGCTGGCTTTGATTGACTCACAAACCTTCATCTGGCGAAAGCCCGCCTCAGTGGCAAAGACATATTATAGGAAATATGTGTCGTTTAAGGAGGATTCACATTCTGATGTGAAGGACGAGGAAATGGACGACATATCAAAATCGTCTGAGGTTTCAGCTGATGTAGATCATGGCTGTCTCGATGGAAGTGCTGGTCCCTCAAAACATGTCACTGAAGACCACTAG

mRNA sequence

ATGGTAGCAATTGAAACTAAGTACTTTGGAGCTGGAAATCAAAATCAAGACAGCTCAAACTCATCCTCAGATGGTCCATGTTTAGAGGTGTCGAGCTTTGGGGGCCTTTTTATAATCACTGGGATAGCATTCCTGCTGGCTTTGATTGACTCACAAACCTTCATCTGGCGAAAGCCCGCCTCAGTGGCAAAGACATATTATAGGAAATATGTGTCGTTTAAGGAGGATTCACATTCTGATGTGAAGGACGAGGAAATGGACGACATATCAAAATCGTCTGAGGTTTCAGCTGATGTAGATCATGGCTGTCTCGATGGAAGTGCTGGTCCCTCAAAACATGTCACTGAAGACCACTAG

Coding sequence (CDS)

ATGGTAGCAATTGAAACTAAGTACTTTGGAGCTGGAAATCAAAATCAAGACAGCTCAAACTCATCCTCAGATGGTCCATGTTTAGAGGTGTCGAGCTTTGGGGGCCTTTTTATAATCACTGGGATAGCATTCCTGCTGGCTTTGATTGACTCACAAACCTTCATCTGGCGAAAGCCCGCCTCAGTGGCAAAGACATATTATAGGAAATATGTGTCGTTTAAGGAGGATTCACATTCTGATGTGAAGGACGAGGAAATGGACGACATATCAAAATCGTCTGAGGTTTCAGCTGATGTAGATCATGGCTGTCTCGATGGAAGTGCTGGTCCCTCAAAACATGTCACTGAAGACCACTAG

Protein sequence

MVAIETKYFGAGNQNQDSSNSSSDGPCLEVSSFGGLFIITGIAFLLALIDSQTFIWRKPASVAKTYYRKYVSFKEDSHSDVKDEEMDDISKSSEVSADVDHGCLDGSAGPSKHVTEDH*

Homology

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BLAST of Csa1G418770 vs. TrEMBL
Match: A0A0A0LZN0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G418770 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 8.9e-61
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1


Query: 1   MVAIETKYFGAGNQNQDSSNSSSDGPCLEVSSFGGLFIITGIAFLLALIDSQTFIWRKPA 60
           MVAIETKYFGAGNQNQDSSNSSSDGPCLEVSSFGGLFIITGIAFLLALIDSQTFIWRKPA
Sbjct: 1   MVAIETKYFGAGNQNQDSSNSSSDGPCLEVSSFGGLFIITGIAFLLALIDSQTFIWRKPA 60

Query: 61  SVAKTYYRKYVSFKEDSHSDVKDEEMDDISKSSEVSADVDHGCLDGSAGPSKHVTEDH 119
           SVAKTYYRKYVSFKEDSHSDVKDEEMDDISKSSEVSADVDHGCLDGSAGPSKHVTEDH
Sbjct: 61  SVAKTYYRKYVSFKEDSHSDVKDEEMDDISKSSEVSADVDHGCLDGSAGPSKHVTEDH 118

[Close]

BLAST of Csa1G418770 vs. TrEMBL
Match: V7CBZ4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G149500g PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.1e-09
Identity = 38/78 (48.72%), Postives = 49/78 (62.82%), Query Frame = 1


Query: 1   MVAIETKYFGAGNQNQDSSNSSSDGPC-LEVSSFGGLFIITGIAFLLALIDSQTFIWRKP 60
           M  IE KYFG  +  QDSS   S  P  L   SF GLF+ITGI+ L AL+ S++ IW+KP
Sbjct: 383 MNEIEEKYFGKNDIGQDSSGEVSSAPLSLSFHSFAGLFMITGISTLFALLISESVIWQKP 442

Query: 61  ASVAKTYYRKYVSFKEDS 78
             +AK   ++Y+SFK  S
Sbjct: 443 ILMAKALSQRYLSFKPSS 460

[Close]

BLAST of Csa1G418770 vs. TrEMBL
Match: A0A0B2RRB9_GLYSO (Glutamate receptor 2.8 OS=Glycine soja GN=glysoja_032960 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.3e-07
Identity = 34/74 (45.95%), Postives = 44/74 (59.46%), Query Frame = 1


Query: 1   MVAIETKYFGAGNQ---NQDSSNSSSDGPCLEVSSFGGLFIITGIAFLLALIDSQTFIWR 60
           M  IE KYFG  +       S+  SS  P L    F GLF ITGI+ LLAL+ S+T IW+
Sbjct: 271 MKEIEEKYFGKNDDIGGEDPSAEISSATPSLNFHCFSGLFFITGISTLLALLVSETVIWQ 330

Query: 61  KPASVAKTYYRKYV 72
           KP  +AK Y ++Y+
Sbjct: 331 KPILIAKAYGQRYL 344

[Close]

BLAST of Csa1G418770 vs. TrEMBL
Match: A0A061E4Z0_THECC (Glutamate receptor OS=Theobroma cacao GN=TCM_009437 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.7e-07
Identity = 35/70 (50.00%), Postives = 46/70 (65.71%), Query Frame = 1


Query: 4   IETKYFGAGNQNQDSSNS-SSDGPCLEVSSFGGLFIITGIAFLLALIDSQTFIWRKPASV 63
           IE KYF     +  S+   S+D   L + SFGGLFIITGIA LLAL+ S+ + W KP S+
Sbjct: 786 IEKKYFKHQVTSLYSAAPISADSRSLSLHSFGGLFIITGIATLLALVISEGYFWEKPVSM 845

Query: 64  AKTYYRKYVS 73
           AK Y ++Y+S
Sbjct: 846 AKKYGQRYLS 855

[Close]

BLAST of Csa1G418770 vs. TrEMBL
Match: A0A0B2RP05_GLYSO (Glutamate receptor 2.8 OS=Glycine soja GN=glysoja_032961 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.7e-07
Identity = 35/72 (48.61%), Postives = 46/72 (63.89%), Query Frame = 1


Query: 1   MVAIETKYFGAGNQNQDSSNS-SSDGPCLEVSSFGGLFIITGIAFLLALIDSQTFIWRKP 60
           M  IE KYFG  +  +DSS   SS  P L   SF GLF+ITGI+ LLAL+ S+T IWR+ 
Sbjct: 386 MNEIERKYFGKKDIEEDSSAEISSAAPSLNFHSFAGLFLITGISTLLALMVSETVIWRRV 445

Query: 61  ASVAKTYYRKYV 72
             +AK   ++Y+
Sbjct: 446 ILMAKAISQRYL 457

[Close]

BLAST of Csa1G418770 vs. NCBI nr
Match: gi|700210315|gb|KGN65411.1| (hypothetical protein Csa_1G418770 [Cucumis sativus])

HSP 1 Score: 240.7 bits (613), Expect = 1.3e-60
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1


Query: 1   MVAIETKYFGAGNQNQDSSNSSSDGPCLEVSSFGGLFIITGIAFLLALIDSQTFIWRKPA 60
           MVAIETKYFGAGNQNQDSSNSSSDGPCLEVSSFGGLFIITGIAFLLALIDSQTFIWRKPA
Sbjct: 1   MVAIETKYFGAGNQNQDSSNSSSDGPCLEVSSFGGLFIITGIAFLLALIDSQTFIWRKPA 60

Query: 61  SVAKTYYRKYVSFKEDSHSDVKDEEMDDISKSSEVSADVDHGCLDGSAGPSKHVTEDH 119
           SVAKTYYRKYVSFKEDSHSDVKDEEMDDISKSSEVSADVDHGCLDGSAGPSKHVTEDH
Sbjct: 61  SVAKTYYRKYVSFKEDSHSDVKDEEMDDISKSSEVSADVDHGCLDGSAGPSKHVTEDH 118

[Close]

BLAST of Csa1G418770 vs. NCBI nr
Match: gi|449457227|ref|XP_004146350.1| (PREDICTED: glutamate receptor 2.8-like [Cucumis sativus])

HSP 1 Score: 240.7 bits (613), Expect = 1.3e-60
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1


Query: 1   MVAIETKYFGAGNQNQDSSNSSSDGPCLEVSSFGGLFIITGIAFLLALIDSQTFIWRKPA 60
           MVAIETKYFGAGNQNQDSSNSSSDGPCLEVSSFGGLFIITGIAFLLALIDSQTFIWRKPA
Sbjct: 742 MVAIETKYFGAGNQNQDSSNSSSDGPCLEVSSFGGLFIITGIAFLLALIDSQTFIWRKPA 801

Query: 61  SVAKTYYRKYVSFKEDSHSDVKDEEMDDISKSSEVSADVDHGCLDGSAGPSKHVTEDH 119
           SVAKTYYRKYVSFKEDSHSDVKDEEMDDISKSSEVSADVDHGCLDGSAGPSKHVTEDH
Sbjct: 802 SVAKTYYRKYVSFKEDSHSDVKDEEMDDISKSSEVSADVDHGCLDGSAGPSKHVTEDH 859

[Close]

BLAST of Csa1G418770 vs. NCBI nr
Match: gi|659107394|ref|XP_008453652.1| (PREDICTED: glutamate receptor 2.2-like [Cucumis melo])

HSP 1 Score: 230.7 bits (587), Expect = 1.3e-57
Identity = 112/118 (94.92%), Postives = 115/118 (97.46%), Query Frame = 1


Query: 1   MVAIETKYFGAGNQNQDSSNSSSDGPCLEVSSFGGLFIITGIAFLLALIDSQTFIWRKPA 60
           MV IETKYFGAGNQNQDSSNSSSDGPCLEVSSFGGLFIITGIAFLLALIDSQTFIW+KPA
Sbjct: 816 MVTIETKYFGAGNQNQDSSNSSSDGPCLEVSSFGGLFIITGIAFLLALIDSQTFIWQKPA 875

Query: 61  SVAKTYYRKYVSFKEDSHSDVKDEEMDDISKSSEVSADVDHGCLDGSAGPSKHVTEDH 119
           SVAKTYYRKYVSFKEDSHSDVKD+EMDD+SKSSEVSAD DHGC DGSAGPSKHVTEDH
Sbjct: 876 SVAKTYYRKYVSFKEDSHSDVKDKEMDDMSKSSEVSADADHGCHDGSAGPSKHVTEDH 933

[Close]

BLAST of Csa1G418770 vs. NCBI nr
Match: gi|1012002500|ref|XP_015935112.1| (PREDICTED: glutamate receptor 2.8-like isoform X1 [Arachis duranensis])

HSP 1 Score: 72.0 bits (175), Expect = 7.8e-10
Identity = 45/98 (45.92%), Postives = 61/98 (62.24%), Query Frame = 1


Query: 1   MVAIETKYFGAGNQN-------QDSSNSSSDG-PCLEVSSFGGLFIITGIAFLLALIDSQ 60
           M  IE KYFG+ N +       Q S+++SSDG P L   SF GLFIITGIA  LAL+ S+
Sbjct: 402 MQPIEMKYFGSSNYDFEDDSYDQLSTSTSSDGTPSLNSQSFAGLFIITGIATFLALVVSE 461

Query: 61  TFIWRKPASVAKTYYRKYVSFKEDSHSDVKDEEMDDIS 91
           + IWRKP ++AK Y +K++     S S  K ++  D+S
Sbjct: 462 SNIWRKPVTLAKVYSQKFLLM---SPSWAKSKQSMDVS 496

[Close]

BLAST of Csa1G418770 vs. NCBI nr
Match: gi|593783531|ref|XP_007154806.1| (hypothetical protein PHAVU_003G149500g [Phaseolus vulgaris])

HSP 1 Score: 70.1 bits (170), Expect = 3.0e-09
Identity = 38/78 (48.72%), Postives = 49/78 (62.82%), Query Frame = 1


Query: 1   MVAIETKYFGAGNQNQDSSNSSSDGPC-LEVSSFGGLFIITGIAFLLALIDSQTFIWRKP 60
           M  IE KYFG  +  QDSS   S  P  L   SF GLF+ITGI+ L AL+ S++ IW+KP
Sbjct: 383 MNEIEEKYFGKNDIGQDSSGEVSSAPLSLSFHSFAGLFMITGISTLFALLISESVIWQKP 442

Query: 61  ASVAKTYYRKYVSFKEDS 78
             +AK   ++Y+SFK  S
Sbjct: 443 ILMAKALSQRYLSFKPSS 460

The following BLAST results are available for this feature:

BLAST of Csa1G418770 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LZN0_CUCSA	8.9e-61	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G418770 PE=4 SV=1	[more]
V7CBZ4_PHAVU	2.1e-09	48.72	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G149500g PE=3 SV=1	[more]
A0A0B2RRB9_GLYSO	4.3e-07	45.95	Glutamate receptor 2.8 OS=Glycine soja GN=glysoja_032960 PE=3 SV=1	[more]
A0A061E4Z0_THECC	5.7e-07	50.00	Glutamate receptor OS=Theobroma cacao GN=TCM_009437 PE=3 SV=1	[more]
A0A0B2RP05_GLYSO	5.7e-07	48.61	Glutamate receptor 2.8 OS=Glycine soja GN=glysoja_032961 PE=3 SV=1	[more]

BLAST of Csa1G418770 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210315\|gb\|KGN65411.1\|	1.3e-60	100.00	hypothetical protein Csa_1G418770 [Cucumis sativus]	[more]
gi\|449457227\|ref\|XP_004146350.1\|	1.3e-60	100.00	PREDICTED: glutamate receptor 2.8-like [Cucumis sativus]	[more]
gi\|659107394\|ref\|XP_008453652.1\|	1.3e-57	94.92	PREDICTED: glutamate receptor 2.2-like [Cucumis melo]	[more]
gi\|1012002500\|ref\|XP_015935112.1\|	7.8e-10	45.92	PREDICTED: glutamate receptor 2.8-like isoform X1 [Arachis duranensis]	[more]
gi\|593783531\|ref\|XP_007154806.1\|	3.0e-09	48.72	hypothetical protein PHAVU_003G149500g [Phaseolus vulgaris]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044699	single-organism process
biological_process	GO:0006810	transport
biological_process	GO:0007268	chemical synaptic transmission
biological_process	GO:0035235	ionotropic glutamate receptor signaling pathway
biological_process	GO:0034220	ion transmembrane transport
biological_process	GO:0060079	excitatory postsynaptic potential
biological_process	GO:0006811	ion transport
cellular_component	GO:0016020	membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005234	extracellular-glutamate-gated ion channel activity
molecular_function	GO:0004970	ionotropic glutamate receptor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G418770.1	Csa1G418770.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G418770	Cla018794	Watermelon (97103) v1	cuwmB079
Csa1G418770	MELO3C017505	Melon (DHL92) v3.5.1	cumeB042
Csa1G418770	ClCG06G013010	Watermelon (Charleston Gray)	cuwcgB066
Csa1G418770	Lsi06G011060	Bottle gourd (USVL1VR-Ls)	culsiB063
Csa1G418770	Cla97C06G122320	Watermelon (97103) v2	cuwmbB065
Csa1G418770	Bhi02G000619	Wax gourd	cuwgoB097
Csa1G418770	CSPI01G19900	Wild cucumber (PI 183967)	cpicuB001
Csa1G418770	Cucsa.092130	Cucumber (Gy14) v1	cgycuB097
Csa1G418770	CmaCh11G004180	Cucurbita maxima (Rimu)	cmacuB098
Csa1G418770	CmoCh11G004190	Cucurbita moschata (Rifu)	cmocuB086
Csa1G418770	Cp4.1LG04g12860	Cucurbita pepo (Zucchini)	cpecuB637
Csa1G418770	CsGy1G019630	Cucumber (Gy14) v2	cgybcuB002

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G418770	Melon (DHL92) v3.6.1	cumedB034