Csa1G313810 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G313810
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionLactoylglutathione lyase, putative
LocationChr1 : 13691122 .. 13691577 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCACAACAGAGAAGCAATTGAAAGAGATGAGAATCGAGTACGTAAAGTGTGAGGTGGAAGACGAGGGGATCTTCGTTGACCAGCTCTTCTTCCACGACCCCGATGGCCTAATGATCGAAATTTGCAACTGTGAGAACCTCCCCATCTTACCGGTGTCAGGAGGTGGTGACTCCCCTACCACGGCCACCAACGCAGCTCGTTTCTGCAGTATTCAACAAGCAGAGGAACAACAAAAGCTAAAACAAATTCAAAGCGCCACCGTTCAAAGGATGCAACTCCAGCAACTTCTCATCAACATCCCATGCAACGCCTGGACATGAAAACTAAACTATATATATTGTCTTCCTTTATTATTTTGTATGTTGTTTTACATGTTCATCAAATCATTATCATCCTGGTTACGTTTATTTAAAATGATAAAAGGGAAAATTATGAATTTGATTGCAATCAAC

mRNA sequence

ATGTCCACAACAGAGAAGCAATTGAAAGAGATGAGAATCGAGTACGTAAAGTGTGAGGTGGAAGACGAGGGGATCTTCGTTGACCAGCTCTTCTTCCACGACCCCGATGGCCTAATGATCGAAATTTGCAACTGTGAGAACCTCCCCATCTTACCGGTGTCAGGAGGTGGTGACTCCCCTACCACGGCCACCAACGCAGCTCGTTTCTGCAGTATTCAACAAGCAGAGGAACAACAAAAGCTAAAACAAATTCAAAGCGCCACCGTTCAAAGGATGCAACTCCAGCAACTTCTCATCAACATCCCATGCAACGCCTGGACATGA

Coding sequence (CDS)

ATGTCCACAACAGAGAAGCAATTGAAAGAGATGAGAATCGAGTACGTAAAGTGTGAGGTGGAAGACGAGGGGATCTTCGTTGACCAGCTCTTCTTCCACGACCCCGATGGCCTAATGATCGAAATTTGCAACTGTGAGAACCTCCCCATCTTACCGGTGTCAGGAGGTGGTGACTCCCCTACCACGGCCACCAACGCAGCTCGTTTCTGCAGTATTCAACAAGCAGAGGAACAACAAAAGCTAAAACAAATTCAAAGCGCCACCGTTCAAAGGATGCAACTCCAGCAACTTCTCATCAACATCCCATGCAACGCCTGGACATGA

Protein sequence

MSTTEKQLKEMRIEYVKCEVEDEGIFVDQLFFHDPDGLMIEICNCENLPILPVSGGGDSPTTATNAARFCSIQQAEEQQKLKQIQSATVQRMQLQQLLINIPCNAWT*
Homology
[Close]
BLAST of Csa1G313810 vs. TrEMBL
Match: A0A0A0LZB1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G313810 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 8.6e-55
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1 

Query: 1   MSTTEKQLKEMRIEYVKCEVEDEGIFVDQLFFHDPDGLMIEICNCENLPILPVSGGGDSP 60
           MSTTEKQLKEMRIEYVKCEVEDEGIFVDQLFFHDPDGLMIEICNCENLPILPVSGGGDSP
Sbjct: 1   MSTTEKQLKEMRIEYVKCEVEDEGIFVDQLFFHDPDGLMIEICNCENLPILPVSGGGDSP 60

Query: 61  TTATNAARFCSIQQAEEQQKLKQIQSATVQRMQLQQLLINIPCNAWT 108
           TTATNAARFCSIQQAEEQQKLKQIQSATVQRMQLQQLLINIPCNAWT
Sbjct: 61  TTATNAARFCSIQQAEEQQKLKQIQSATVQRMQLQQLLINIPCNAWT 107

[Close]
BLAST of Csa1G313810 vs. TrEMBL
Match: A5BHH5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g05010 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.4e-19
Identity = 54/104 (51.92%), Postives = 74/104 (71.15%), Query Frame = 1 

Query: 1   MSTTEKQLKEMRIEYVKCEVEDEGIFVDQLFFHDPDGLMIEICNCENLPILPVSGGGDSP 60
           M+T EK+LKEM+IEYV+  VE+ GI VDQLFFHDPDG MIEICNC+NLP++P+ GGG   
Sbjct: 92  MATVEKKLKEMKIEYVQSRVEEGGICVDQLFFHDPDGSMIEICNCDNLPVIPLGGGGGDT 151

Query: 61  TTATNAARFCSIQQAEEQQKLKQIQSATVQRMQLQQLLINIPCN 105
           T  +     C++QQ   QQ+L Q+ +  +++ Q+   L +IP N
Sbjct: 152 TLCSRIN--CNVQQ---QQQL-QLAAGQIKQQQV-TCLPSIPIN 188

[Close]
BLAST of Csa1G313810 vs. TrEMBL
Match: A0A165WYA1_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_014871 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.5e-17
Identity = 44/80 (55.00%), Postives = 57/80 (71.25%), Query Frame = 1 

Query: 1   MSTTEKQLKEMRIEYVKCEVEDEGIFVDQLFFHDPDGLMIEICNCENLPILPVSGGGDSP 60
           MS  EK+L EM+IEYVK  VE+ G++VDQLFFHDPDGLMIEICNC+N+P++P++G     
Sbjct: 91  MSAVEKKLTEMKIEYVKARVEEGGVYVDQLFFHDPDGLMIEICNCDNIPVVPLAG----- 150

Query: 61  TTATNAARFCSIQQAEEQQK 81
                + R CS+     QQK
Sbjct: 151 ----ESLRMCSLVSCSVQQK 161

[Close]
BLAST of Csa1G313810 vs. TrEMBL
Match: A0A0K9R6K6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_101080 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-16
Identity = 45/91 (49.45%), Postives = 60/91 (65.93%), Query Frame = 1 

Query: 1   MSTTEKQLKEMRIEYVKCEVEDEGIFVDQLFFHDPDGLMIEICNCENLPILPVSGGGDSP 60
           M   EK+LKEM I++V+  VE+ GI+VDQLFFHDPDG MIEICNC+NLP++P+ G     
Sbjct: 91  MGAVEKKLKEMEIKHVRARVEEGGIYVDQLFFHDPDGFMIEICNCDNLPVIPIGG----- 150

Query: 61  TTATNAARFCSIQQAEEQQKLKQIQSATVQR 92
                  R CSI + E  Q+ +Q  S  +Q+
Sbjct: 151 ----ELVRSCSIVKFELLQQQQQTPSPVIQQ 172

[Close]
BLAST of Csa1G313810 vs. TrEMBL
Match: A0A151SH42_CAJCA (Metallothiol transferase fosB OS=Cajanus cajan GN=KK1_000197 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.6e-16
Identity = 46/90 (51.11%), Postives = 59/90 (65.56%), Query Frame = 1 

Query: 1   MSTTEKQLKEMRIEYVKCEVEDEGIFVDQLFFHDPDGLMIEICNCENLPILPVSGGGDSP 60
           M   EK+LKEM I+YV+  VE+ GI VDQLFFHDPDG MIEICNC++LP++P++G     
Sbjct: 91  MGAVEKKLKEMDIDYVRATVEEGGIQVDQLFFHDPDGFMIEICNCDSLPVIPLAG----- 150

Query: 61  TTATNAARFCSIQQAEEQQKLKQIQSATVQ 91
                 AR CS+   E+ Q  +QIQ    Q
Sbjct: 151 ----EVARSCSLVNLEKMQNQQQIQKMVHQ 171

[Close]
BLAST of Csa1G313810 vs. TAIR10
Match: AT1G80160.1 (AT1G80160.1 Lactoylglutathione lyase / glyoxalase I family protein)

HSP 1 Score: 83.6 bits (205), Expect = 8.3e-17
Identity = 36/55 (65.45%), Postives = 43/55 (78.18%), Query Frame = 1 

Query: 1   MSTTEKQLKEMRIEYVKCEVEDEGIFVDQLFFHDPDGLMIEICNCENLPILPVSG 56
           M   EK+LKEM IEYV+  VE+ GI VDQLFFHDPD  MIEICNC++LP++P++G
Sbjct: 91  MEAVEKKLKEMEIEYVRAVVEEGGIQVDQLFFHDPDAFMIEICNCDSLPVIPLAG 145

[Close]
BLAST of Csa1G313810 vs. TAIR10
Match: AT1G15380.1 (AT1G15380.1 Lactoylglutathione lyase / glyoxalase I family protein)

HSP 1 Score: 80.5 bits (197), Expect = 7.1e-16
Identity = 35/55 (63.64%), Postives = 43/55 (78.18%), Query Frame = 1 

Query: 1   MSTTEKQLKEMRIEYVKCEVEDEGIFVDQLFFHDPDGLMIEICNCENLPILPVSG 56
           M   EK+L+EM I+YV+  VE+ GI VDQLFFHDPDG MIEICNC++LP++P+ G
Sbjct: 91  MGVVEKKLEEMGIDYVRALVEEGGIQVDQLFFHDPDGFMIEICNCDSLPVVPLVG 145

[Close]
BLAST of Csa1G313810 vs. TAIR10
Match: AT2G28420.1 (AT2G28420.1 Lactoylglutathione lyase / glyoxalase I family protein)

HSP 1 Score: 68.2 bits (165), Expect = 3.6e-12
Identity = 30/53 (56.60%), Postives = 39/53 (73.58%), Query Frame = 1 

Query: 1   MSTTEKQLKEMRIEYVKCEVEDE-GIFVDQLFFHDPDGLMIEICNCENLPILP 53
           M   EK+LKE++++Y+K  V DE    +DQLFF+DPDG M+EICNCENL ++P
Sbjct: 99  MEALEKRLKEVKVKYIKRTVGDEKDAAIDQLFFNDPDGFMVEICNCENLELVP 151

[Close]
BLAST of Csa1G313810 vs. NCBI nr
Match: gi|449466995|ref|XP_004151211.1| (PREDICTED: uncharacterized protein LOC101203188 [Cucumis sativus])

HSP 1 Score: 220.7 bits (561), Expect = 1.2e-54
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1 

Query: 1   MSTTEKQLKEMRIEYVKCEVEDEGIFVDQLFFHDPDGLMIEICNCENLPILPVSGGGDSP 60
           MSTTEKQLKEMRIEYVKCEVEDEGIFVDQLFFHDPDGLMIEICNCENLPILPVSGGGDSP
Sbjct: 88  MSTTEKQLKEMRIEYVKCEVEDEGIFVDQLFFHDPDGLMIEICNCENLPILPVSGGGDSP 147

Query: 61  TTATNAARFCSIQQAEEQQKLKQIQSATVQRMQLQQLLINIPCNAWT 108
           TTATNAARFCSIQQAEEQQKLKQIQSATVQRMQLQQLLINIPCNAWT
Sbjct: 148 TTATNAARFCSIQQAEEQQKLKQIQSATVQRMQLQQLLINIPCNAWT 194

[Close]
BLAST of Csa1G313810 vs. NCBI nr
Match: gi|700210215|gb|KGN65311.1| (hypothetical protein Csa_1G313810 [Cucumis sativus])

HSP 1 Score: 220.7 bits (561), Expect = 1.2e-54
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1 

Query: 1   MSTTEKQLKEMRIEYVKCEVEDEGIFVDQLFFHDPDGLMIEICNCENLPILPVSGGGDSP 60
           MSTTEKQLKEMRIEYVKCEVEDEGIFVDQLFFHDPDGLMIEICNCENLPILPVSGGGDSP
Sbjct: 1   MSTTEKQLKEMRIEYVKCEVEDEGIFVDQLFFHDPDGLMIEICNCENLPILPVSGGGDSP 60

Query: 61  TTATNAARFCSIQQAEEQQKLKQIQSATVQRMQLQQLLINIPCNAWT 108
           TTATNAARFCSIQQAEEQQKLKQIQSATVQRMQLQQLLINIPCNAWT
Sbjct: 61  TTATNAARFCSIQQAEEQQKLKQIQSATVQRMQLQQLLINIPCNAWT 107

[Close]
BLAST of Csa1G313810 vs. NCBI nr
Match: gi|659130166|ref|XP_008465032.1| (PREDICTED: uncharacterized protein LOC103502748 [Cucumis melo])

HSP 1 Score: 203.4 bits (516), Expect = 2.0e-49
Identity = 99/108 (91.67%), Postives = 103/108 (95.37%), Query Frame = 1 

Query: 1   MSTTEKQLKEMRIEYVKCEVEDEGIFVDQLFFHDPDGLMIEICNCENLPILPVSGGGDSP 60
           M TTEKQLKEMRIEYVKCEVEDEGIFVDQLFFHDPDGLMIEICNCENLP++P SGGGDSP
Sbjct: 88  METTEKQLKEMRIEYVKCEVEDEGIFVDQLFFHDPDGLMIEICNCENLPVVPASGGGDSP 147

Query: 61  TTATNAARFCSIQQAEEQQKLKQIQSATVQR-MQLQQLLINIPCNAWT 108
           TT TN ARFCSIQQAEEQQKLKQIQ+ATVQR MQLQQLLINIPCNA+T
Sbjct: 148 TTPTNTARFCSIQQAEEQQKLKQIQNATVQRTMQLQQLLINIPCNAYT 195

[Close]
BLAST of Csa1G313810 vs. NCBI nr
Match: gi|225445448|ref|XP_002285087.1| (PREDICTED: uncharacterized protein LOC100244070 [Vitis vinifera])

HSP 1 Score: 102.4 bits (254), Expect = 4.9e-19
Identity = 54/104 (51.92%), Postives = 74/104 (71.15%), Query Frame = 1 

Query: 1   MSTTEKQLKEMRIEYVKCEVEDEGIFVDQLFFHDPDGLMIEICNCENLPILPVSGGGDSP 60
           M+T EK+LKEM+IEYV+  VE+ GI VDQLFFHDPDG MIEICNC+NLP++P+ GGG   
Sbjct: 92  MATVEKKLKEMKIEYVQSRVEEGGICVDQLFFHDPDGSMIEICNCDNLPVIPLGGGGGDT 151

Query: 61  TTATNAARFCSIQQAEEQQKLKQIQSATVQRMQLQQLLINIPCN 105
           T  +     C++QQ   QQ+L Q+ +  +++ Q+   L +IP N
Sbjct: 152 TLCSRIN--CNVQQ---QQQL-QLAAGQIKQQQV-TCLPSIPIN 188

[Close]
BLAST of Csa1G313810 vs. NCBI nr
Match: gi|698583359|ref|XP_009778075.1| (PREDICTED: uncharacterized protein LOC104227516 [Nicotiana sylvestris])

HSP 1 Score: 100.1 bits (248), Expect = 2.4e-18
Identity = 46/79 (58.23%), Postives = 60/79 (75.95%), Query Frame = 1 

Query: 1   MSTTEKQLKEMRIEYVKCEVEDEGIFVDQLFFHDPDGLMIEICNCENLPILPVSGGGDSP 60
           M+T EK+LKEM IEY+K  VE+ GI+VDQLFFHDPDG+MIEICNC+NLP++P+SG    P
Sbjct: 87  MTTVEKRLKEMEIEYIKSRVEEGGIYVDQLFFHDPDGMMIEICNCDNLPVIPLSGETLRP 146

Query: 61  TTATNAARFCSIQQAEEQQ 80
            +       CS+Q+ + QQ
Sbjct: 147 CSTLR----CSMQRKKNQQ 161

The following BLAST results are available for this feature:
BLAST of Csa1G313810 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LZB1_CUCSA8.6e-55100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G313810 PE=4 SV=1[more]
A5BHH5_VITVI3.4e-1951.92Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g05010 PE=4 SV=... [more]
A0A165WYA1_DAUCA2.5e-1755.00Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_014871 PE=4 SV=1[more]
A0A0K9R6K6_SPIOL1.2e-1649.45Uncharacterized protein OS=Spinacia oleracea GN=SOVF_101080 PE=4 SV=1[more]
A0A151SH42_CAJCA1.6e-1651.11Metallothiol transferase fosB OS=Cajanus cajan GN=KK1_000197 PE=4 SV=1[more]
BLAST of Csa1G313810 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G80160.18.3e-1765.45 Lactoylglutathione lyase / glyoxalase I family protein[more]
AT1G15380.17.1e-1663.64 Lactoylglutathione lyase / glyoxalase I family protein[more]
AT2G28420.13.6e-1256.60 Lactoylglutathione lyase / glyoxalase I family protein[more]
BLAST of Csa1G313810 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449466995|ref|XP_004151211.1|1.2e-54100.00PREDICTED: uncharacterized protein LOC101203188 [Cucumis sativus][more]
gi|700210215|gb|KGN65311.1|1.2e-54100.00hypothetical protein Csa_1G313810 [Cucumis sativus][more]
gi|659130166|ref|XP_008465032.1|2.0e-4991.67PREDICTED: uncharacterized protein LOC103502748 [Cucumis melo][more]
gi|225445448|ref|XP_002285087.1|4.9e-1951.92PREDICTED: uncharacterized protein LOC100244070 [Vitis vinifera][more]
gi|698583359|ref|XP_009778075.1|2.4e-1858.23PREDICTED: uncharacterized protein LOC104227516 [Nicotiana sylvestris][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016829 lyase activity
molecular_function GO:0016740 transferase activity
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU156180cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G313810.1Csa1G313810.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU156180CU156180transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 1..21
scor
NoneNo IPR availablePANTHERPTHR10374LACTOYLGLUTATHIONE LYASE GLYOXALASE Icoord: 1..94
score: 1.9
NoneNo IPR availablePANTHERPTHR10374:SF15SUBFAMILY NOT NAMEDcoord: 1..94
score: 1.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G313810Cla012259Watermelon (97103) v1cuwmB081
Csa1G313810MELO3C026649Melon (DHL92) v3.5.1cumeB048
Csa1G313810ClCG06G010960Watermelon (Charleston Gray)cuwcgB069
Csa1G313810Lsi06G009520Bottle gourd (USVL1VR-Ls)culsiB060
Csa1G313810MELO3C026649.2Melon (DHL92) v3.6.1cumedB051
Csa1G313810Cla97C06G120180Watermelon (97103) v2cuwmbB067
Csa1G313810CSPI01G18660Wild cucumber (PI 183967)cpicuB001
Csa1G313810Cucsa.292870Cucumber (Gy14) v1cgycuB420
Csa1G313810CmaCh11G005690Cucurbita maxima (Rimu)cmacuB089
Csa1G313810CmaCh10G005600Cucurbita maxima (Rimu)cmacuB062
Csa1G313810CmoCh11G005710Cucurbita moschata (Rifu)cmocuB079
Csa1G313810CmoCh10G006020Cucurbita moschata (Rifu)cmocuB051
Csa1G313810Cp4.1LG18g04770Cucurbita pepo (Zucchini)cpecuB354
Csa1G313810Cp4.1LG04g09670Cucurbita pepo (Zucchini)cpecuB658
Csa1G313810CsGy1G018660Cucumber (Gy14) v2cgybcuB002
Csa1G313810Carg12152Silver-seed gourdcarcuB0034
Csa1G313810Carg09904Silver-seed gourdcarcuB0135
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G313810Silver-seed gourdcarcuB0040
Csa1G313810Silver-seed gourdcarcuB0595
Csa1G313810Watermelon (97103) v2cuwmbB019
Csa1G313810Wax gourdcuwgoB001
Csa1G313810Wax gourdcuwgoB100
Csa1G313810Cucumber (Chinese Long) v2cucuB005
Csa1G313810Cucumber (Gy14) v1cgycuB182
Csa1G313810Cucurbita maxima (Rimu)cmacuB111
Csa1G313810Cucurbita maxima (Rimu)cmacuB782
Csa1G313810Cucurbita moschata (Rifu)cmocuB097
Csa1G313810Cucurbita moschata (Rifu)cmocuB776
Csa1G313810Melon (DHL92) v3.5.1cumeB061
Csa1G313810Melon (DHL92) v3.5.1cumeB076
Csa1G313810Watermelon (Charleston Gray)cuwcgB007
Csa1G313810Watermelon (97103) v1cuwmB077
Csa1G313810Cucurbita pepo (Zucchini)cpecuB095
Csa1G313810Cucurbita pepo (Zucchini)cpecuB644
Csa1G313810Bottle gourd (USVL1VR-Ls)culsiB008
Csa1G313810Cucumber (Gy14) v2cgybcuB051
Csa1G313810Melon (DHL92) v3.6.1cumedB069