Csa1G306790 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G306790
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 13648198 .. 13648580 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGGCTGATCAAATTGGAGAATTGGTGTTTCGGATTCATAATCTTCTAGTGAATTATATGTCTCGAAACATGGCATGGAAATTGGAAACCATGGTGGGAAAAGTTGAAGAAATTGTTTACGATGATTGTAGTAGATGGACATATCCTTTCATGAAGATACAAGTGAAAATGGATAATATGCAACCTCTGCAAGATATAAAAGACAAATGAAGGAAAAGAAGTATGGTGTCTTGTCCTGTATGAGAAATGATCAGACATTCGTTTCACTTGTGGTAGGTTGGGTCATTCAGTTCGGAAATGTCAGAAGTCGTGGGATACAGAACAGTGAATTCCATGGTTATGGGGCGTGGATGAAGGCGACAATGGTGAAGAAGGAATAA

mRNA sequence

ATGACGGCTGATCAAATTGGAGAATTGGTGTTTCGGATTCATAATCTTCTAGTGAATTATATGTCTCGAAACATGGCATGGAAATTGGAAACCATGGTGGGAAAAGTTGAAGAAATTGTTTACGATGATTGTAGTAGATGGACATATCCTTTCATGAAGATACAATTCGGAAATGTCAGAAGTCGTGGGATACAGAACAGTGAATTCCATGGTTATGGGGCGTGGATGAAGGCGACAATGGTGAAGAAGGAATAA

Coding sequence (CDS)

ATGACGGCTGATCAAATTGGAGAATTGGTGTTTCGGATTCATAATCTTCTAGTGAATTATATGTCTCGAAACATGGCATGGAAATTGGAAACCATGGTGGGAAAAGTTGAAGAAATTGTTTACGATGATTGTAGTAGATGGACATATCCTTTCATGAAGATACAATTCGGAAATGTCAGAAGTCGTGGGATACAGAACAGTGAATTCCATGGTTATGGGGCGTGGATGAAGGCGACAATGGTGAAGAAGGAATAA

Protein sequence

MTADQIGELVFRIHNLLVNYMSRNMAWKLETMVGKVEEIVYDDCSRWTYPFMKIQFGNVRSRGIQNSEFHGYGAWMKATMVKKE*
Homology
[Close]
BLAST of Csa1G306790 vs. TrEMBL
Match: A0A0A0LWT0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G306790 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 3.0e-42
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1 

Query: 1  MTADQIGELVFRIHNLLVNYMSRNMAWKLETMVGKVEEIVYDDCSRWTYPFMKIQFGNVR 60
          MTADQIGELVFRIHNLLVNYMSRNMAWKLETMVGKVEEIVYDDCSRWTYPFMKIQFGNVR
Sbjct: 1  MTADQIGELVFRIHNLLVNYMSRNMAWKLETMVGKVEEIVYDDCSRWTYPFMKIQFGNVR 60

Query: 61 SRGIQNSEFHGYGAWMKATMVKKE 85
          SRGIQNSEFHGYGAWMKATMVKKE
Sbjct: 61 SRGIQNSEFHGYGAWMKATMVKKE 84

[Close]
BLAST of Csa1G306790 vs. NCBI nr
Match: gi|700210211|gb|KGN65307.1| (hypothetical protein Csa_1G306790 [Cucumis sativus])

HSP 1 Score: 178.7 bits (452), Expect = 4.2e-42
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1 

Query: 1  MTADQIGELVFRIHNLLVNYMSRNMAWKLETMVGKVEEIVYDDCSRWTYPFMKIQFGNVR 60
          MTADQIGELVFRIHNLLVNYMSRNMAWKLETMVGKVEEIVYDDCSRWTYPFMKIQFGNVR
Sbjct: 1  MTADQIGELVFRIHNLLVNYMSRNMAWKLETMVGKVEEIVYDDCSRWTYPFMKIQFGNVR 60

Query: 61 SRGIQNSEFHGYGAWMKATMVKKE 85
          SRGIQNSEFHGYGAWMKATMVKKE
Sbjct: 61 SRGIQNSEFHGYGAWMKATMVKKE 84

The following BLAST results are available for this feature:
BLAST of Csa1G306790 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LWT0_CUCSA3.0e-42100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G306790 PE=4 SV=1[more]
BLAST of Csa1G306790 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210211|gb|KGN65307.1|4.2e-42100.00hypothetical protein Csa_1G306790 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G306790.1Csa1G306790.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G306790CsGy1G018620Cucumber (Gy14) v2cgybcuB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G306790Watermelon (97103) v2cuwmbB019
Csa1G306790Watermelon (97103) v2cuwmbB067
Csa1G306790Wax gourdcuwgoB001
Csa1G306790Wax gourdcuwgoB100
Csa1G306790Cucumber (Chinese Long) v2cucuB005
Csa1G306790Cucumber (Gy14) v1cgycuB050
Csa1G306790Cucumber (Gy14) v1cgycuB182
Csa1G306790Cucurbita maxima (Rimu)cmacuB062
Csa1G306790Cucurbita maxima (Rimu)cmacuB089
Csa1G306790Cucurbita maxima (Rimu)cmacuB111
Csa1G306790Cucurbita maxima (Rimu)cmacuB782
Csa1G306790Cucurbita moschata (Rifu)cmocuB051
Csa1G306790Cucurbita moschata (Rifu)cmocuB079
Csa1G306790Cucurbita moschata (Rifu)cmocuB097
Csa1G306790Cucurbita moschata (Rifu)cmocuB776
Csa1G306790Melon (DHL92) v3.5.1cumeB048
Csa1G306790Melon (DHL92) v3.5.1cumeB061
Csa1G306790Melon (DHL92) v3.5.1cumeB076
Csa1G306790Watermelon (Charleston Gray)cuwcgB007
Csa1G306790Watermelon (Charleston Gray)cuwcgB069
Csa1G306790Watermelon (97103) v1cuwmB077
Csa1G306790Watermelon (97103) v1cuwmB081
Csa1G306790Cucurbita pepo (Zucchini)cpecuB095
Csa1G306790Cucurbita pepo (Zucchini)cpecuB354
Csa1G306790Cucurbita pepo (Zucchini)cpecuB644
Csa1G306790Cucurbita pepo (Zucchini)cpecuB658
Csa1G306790Bottle gourd (USVL1VR-Ls)culsiB008
Csa1G306790Bottle gourd (USVL1VR-Ls)culsiB060
Csa1G306790Cucumber (Gy14) v2cgybcuB051
Csa1G306790Melon (DHL92) v3.6.1cumedB051
Csa1G306790Melon (DHL92) v3.6.1cumedB069
Csa1G306790Silver-seed gourdcarcuB0034
Csa1G306790Silver-seed gourdcarcuB0040
Csa1G306790Silver-seed gourdcarcuB0135
Csa1G306790Silver-seed gourdcarcuB0595