CsGy1G018620 (gene) Cucumber (Gy14) v2

Overview
NameCsGy1G018620
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr1 : 16780866 .. 16781248 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGGCTGATCAAATTGGAGAATTGGTGTTTCGGATTCATAATCTTCTAGTGAATTATATGTCTCGAAACATGGCATGGAAATTGGAAACCATGGTGGGAAAAGTTGAAGAAATTGTTTACGATGATTGTAGTAGATGGACATATCCTTTCATGAAGATACAAGTGAAAATGGATAATATGCAACCTCTGCAAGATATAAAAGACAAATGAAGGAAAAGAAGTATGGTGTCTTGTCCTGTATGAGAAATGATCAGACATTCGTTTCACTTGTGGTAGGTTGGGTCATTCAGTTCGGAAATGTCAGAAGTCGTGGGATACAGAACAGTGAATTCCATGGTTATGGGGCGTGGATGAAGGCGACAATGGTGAAGAAGGAATAA

mRNA sequence

ATGACGGCTGATCAAATTGGAGAATTGGTGTTTCGGATTCATAATCTTCTAGTGAATTATATGTCTCGAAACATGGCATGGAAATTGGAAACCATGGTGGGAAAAGTTGAAGAAATTGTTTACGATGATTGTAGTAGATGGACATATCCTTTCATGAAGATACAAACATTCGTTTCACTTGTGGTAGGTTGGGTCATTCAGTTCGGAAATGTCAGAAGTCGTGGGATACAGAACAGTGAATTCCATGGTTATGGGGCGTGGATGAAGGCGACAATGGTGAAGAAGGAATAA

Coding sequence (CDS)

ATGACGGCTGATCAAATTGGAGAATTGGTGTTTCGGATTCATAATCTTCTAGTGAATTATATGTCTCGAAACATGGCATGGAAATTGGAAACCATGGTGGGAAAAGTTGAAGAAATTGTTTACGATGATTGTAGTAGATGGACATATCCTTTCATGAAGATACAAACATTCGTTTCACTTGTGGTAGGTTGGGTCATTCAGTTCGGAAATGTCAGAAGTCGTGGGATACAGAACAGTGAATTCCATGGTTATGGGGCGTGGATGAAGGCGACAATGGTGAAGAAGGAATAA

Protein sequence

MTADQIGELVFRIHNLLVNYMSRNMAWKLETMVGKVEEIVYDDCSRWTYPFMKIQTFVSLVVGWVIQFGNVRSRGIQNSEFHGYGAWMKATMVKKE
Homology
[Close]
BLAST of CsGy1G018620 vs. NCBI nr
Match: KGN65307.1 (hypothetical protein Csa_1G306790 [Cucumis sativus])

HSP 1 Score: 172.2 bits (435), Expect = 8.7e-40
Identity = 84/96 (87.50%), Postives = 84/96 (87.50%), Query Frame = 0 

Query: 1  MTADQIGELVFRIHNLLVNYMSRNMAWKLETMVGKVEEIVYDDCSRWTYPFMKIQTFVSL 60
          MTADQIGELVFRIHNLLVNYMSRNMAWKLETMVGKVEEIVYDDCSRWTYPFMK       
Sbjct: 1  MTADQIGELVFRIHNLLVNYMSRNMAWKLETMVGKVEEIVYDDCSRWTYPFMK------- 60

Query: 61 VVGWVIQFGNVRSRGIQNSEFHGYGAWMKATMVKKE 97
               IQFGNVRSRGIQNSEFHGYGAWMKATMVKKE
Sbjct: 61 -----IQFGNVRSRGIQNSEFHGYGAWMKATMVKKE 84

[Close]
BLAST of CsGy1G018620 vs. TrEMBL
Match: tr|A0A0A0LWT0|A0A0A0LWT0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G306790 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 5.8e-40
Identity = 84/96 (87.50%), Postives = 84/96 (87.50%), Query Frame = 0 

Query: 1  MTADQIGELVFRIHNLLVNYMSRNMAWKLETMVGKVEEIVYDDCSRWTYPFMKIQTFVSL 60
          MTADQIGELVFRIHNLLVNYMSRNMAWKLETMVGKVEEIVYDDCSRWTYPFMK       
Sbjct: 1  MTADQIGELVFRIHNLLVNYMSRNMAWKLETMVGKVEEIVYDDCSRWTYPFMK------- 60

Query: 61 VVGWVIQFGNVRSRGIQNSEFHGYGAWMKATMVKKE 97
               IQFGNVRSRGIQNSEFHGYGAWMKATMVKKE
Sbjct: 61 -----IQFGNVRSRGIQNSEFHGYGAWMKATMVKKE 84

The following BLAST results are available for this feature:
BLAST of CsGy1G018620 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN65307.18.7e-4087.50hypothetical protein Csa_1G306790 [Cucumis sativus][more]
BLAST of CsGy1G018620 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy1G018620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy1G018620 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LWT0|A0A0A0LWT0_CUCSA5.8e-4087.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G306790 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G018620.1CsGy1G018620.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy1G018620Csa1G306790Cucumber (Chinese Long) v2cgybcuB002
CsGy1G018620CsaV3_1G029800Cucumber (Chinese Long) v3cgybcucB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy1G018620Cucumber (Chinese Long) v3cgybcucB015
CsGy1G018620Cucumber (Chinese Long) v3cgybcucB032
CsGy1G018620Watermelon (97103) v2cgybwmbB020
CsGy1G018620Watermelon (97103) v2cgybwmbB065
CsGy1G018620Wax gourdcgybwgoB003
CsGy1G018620Wax gourdcgybwgoB096
CsGy1G018620Cucumber (Gy14) v2cgybcgybB008
CsGy1G018620Cucumber (Gy14) v2cgybcgybB023
CsGy1G018620Cucurbita maxima (Rimu)cgybcmaB017
CsGy1G018620Cucurbita maxima (Rimu)cgybcmaB031
CsGy1G018620Cucurbita maxima (Rimu)cgybcmaB059
CsGy1G018620Cucurbita maxima (Rimu)cgybcmaB136
CsGy1G018620Cucurbita maxima (Rimu)cgybcmaB137
CsGy1G018620Cucurbita moschata (Rifu)cgybcmoB016
CsGy1G018620Cucurbita moschata (Rifu)cgybcmoB030
CsGy1G018620Cucurbita moschata (Rifu)cgybcmoB044
CsGy1G018620Cucurbita moschata (Rifu)cgybcmoB055
CsGy1G018620Cucurbita moschata (Rifu)cgybcmoB129
CsGy1G018620Cucurbita pepo (Zucchini)cgybcpeB030
CsGy1G018620Cucurbita pepo (Zucchini)cgybcpeB031
CsGy1G018620Cucurbita pepo (Zucchini)cgybcpeB044
CsGy1G018620Cucurbita pepo (Zucchini)cgybcpeB114
CsGy1G018620Cucurbita pepo (Zucchini)cgybcpeB130
CsGy1G018620Cucurbita pepo (Zucchini)cgybcpeB146
CsGy1G018620Cucumber (Chinese Long) v2cgybcuB016
CsGy1G018620Cucumber (Chinese Long) v2cgybcuB028
CsGy1G018620Bottle gourd (USVL1VR-Ls)cgyblsiB057
CsGy1G018620Bottle gourd (USVL1VR-Ls)cgyblsiB007
CsGy1G018620Melon (DHL92) v3.5.1cgybmeB051
CsGy1G018620Melon (DHL92) v3.5.1cgybmeB066
CsGy1G018620Melon (DHL92) v3.5.1cgybmeB074
CsGy1G018620Melon (DHL92) v3.6.1cgybmedB047
CsGy1G018620Melon (DHL92) v3.6.1cgybmedB062
CsGy1G018620Watermelon (Charleston Gray)cgybwcgB007
CsGy1G018620Watermelon (Charleston Gray)cgybwcgB065
CsGy1G018620Watermelon (97103) v1cgybwmB075
CsGy1G018620Watermelon (97103) v1cgybwmB081
CsGy1G018620Wild cucumber (PI 183967)cgybcpiB002
CsGy1G018620Wild cucumber (PI 183967)cgybcpiB014
CsGy1G018620Silver-seed gourdcarcgybB0034
CsGy1G018620Silver-seed gourdcarcgybB0039
CsGy1G018620Silver-seed gourdcarcgybB0133
CsGy1G018620Silver-seed gourdcarcgybB0570