Csa1G263980 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G263980
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 12726836 .. 12727416 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAAAACACACAGCTTCCCCCCATATCTAATTCAAATCCTTCTCTTAACCATCAATTGAAATCATGGTCGCCTCATTGAAGCTGCCAATCATATTCCTAGTTTGCATAGCCATTTTAGCATTACCTGTGATGACACGTACCACGACAACGCTTGATCAGTTCTCAACCAAGGATGTCGCATCGGTGAACTGCACGGTGTTTACTTTCGAGGCAACAAAATGTATGATTGATGTGATGAAGAATTCAATGCCTCCTCATCCGTCATGTTGCAGAGCCATTCTTAAGCTTAACGACTGTAATCCCGAGGTTTACAAAGATGTTCCTTCTACTGACAAGAAATTAATTAAGAAGATTTGTGAGTTGTGGGGTGCTTGATCGAATTCTTATGCTAAAGGTTGTTTAATTGAGTTAATTGGATCGTAATGAATAAGAGAAAATTATCATTTTGTTACTTACATTAGTAGTATTTTATAAATTTAAGGAAGAGTGGATTTTGTTTCCATTTGAAATATGAGAACTAGTATTTGTTTTTCTTTTTACTTTTGTCAAAAGGCCATTTAATTTTGATCTTTATTTTTCTT

mRNA sequence

ATGGTCGCCTCATTGAAGCTGCCAATCATATTCCTAGTTTGCATAGCCATTTTAGCATTACCTGTGATGACACGTACCACGACAACGCTTGATCAGTTCTCAACCAAGGATGTCGCATCGGTGAACTGCACGGTGTTTACTTTCGAGGCAACAAAATGTATGATTGATGTGATGAAGAATTCAATGCCTCCTCATCCGTCATGTTGCAGAGCCATTCTTAAGCTTAACGACTGTAATCCCGAGGTTTACAAAGATGTTCCTTCTACTGACAAGAAATTAATTAAGAAGATTTGTGAGTTGTGGGGTGCTTGA

Coding sequence (CDS)

ATGGTCGCCTCATTGAAGCTGCCAATCATATTCCTAGTTTGCATAGCCATTTTAGCATTACCTGTGATGACACGTACCACGACAACGCTTGATCAGTTCTCAACCAAGGATGTCGCATCGGTGAACTGCACGGTGTTTACTTTCGAGGCAACAAAATGTATGATTGATGTGATGAAGAATTCAATGCCTCCTCATCCGTCATGTTGCAGAGCCATTCTTAAGCTTAACGACTGTAATCCCGAGGTTTACAAAGATGTTCCTTCTACTGACAAGAAATTAATTAAGAAGATTTGTGAGTTGTGGGGTGCTTGA

Protein sequence

MVASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKNSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA*

Homology

[Close]

BLAST of Csa1G263980 vs. TrEMBL
Match: A0A0A0LTE1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263980 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.0e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MVASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN 60
           MVASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN
Sbjct: 1   MVASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN 60

Query: 61  SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA 104
           SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA
Sbjct: 61  SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA 103

[Close]

BLAST of Csa1G263980 vs. TrEMBL
Match: A0A0A0LTD6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263450 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 7.6e-16
Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = 1


Query: 3   ASLKLPIIFLVCIAILALPVMTRT-----TTTLDQFSTKDVASVNCTVFTFEATKCMIDV 62
           ++++L I+FLVCI ILA  V  RT     +  L  F   D +  NC  F  EAT C++DV
Sbjct: 10  STIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFILEATMCVVDV 69

Query: 63  MKNSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICEL 101
           +K  +  HPSCC+AI  LNDC P++Y+ +P  D  +IKKIC L
Sbjct: 70  IKLPVASHPSCCKAISDLNDCAPQIYQHIPDMD--VIKKICGL 110

[Close]

BLAST of Csa1G263980 vs. TrEMBL
Match: A0A0A0LYQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G212820 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.9e-15
Identity = 42/104 (40.38%), Postives = 60/104 (57.69%), Query Frame = 1


Query: 4   SLKLPIIFLVCIAILALPV----MTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMK 63
           ++KL ++F+ C AI A P     +    T    F T+D++   C  F  EATKCMIDV K
Sbjct: 10  TMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEATKCMIDVFK 69

Query: 64  NSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA 104
           + +  HP+CC+AI KL  C+   +  +PS D  +IK +C  WGA
Sbjct: 70  HPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVCTSWGA 113

[Close]

BLAST of Csa1G263980 vs. NCBI nr
Match: gi|700210099|gb|KGN65195.1| (hypothetical protein Csa_1G263980 [Cucumis sativus])

HSP 1 Score: 213.8 bits (543), Expect = 1.5e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MVASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN 60
           MVASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN
Sbjct: 1   MVASLKLPIIFLVCIAILALPVMTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMKN 60

Query: 61  SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA 104
           SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA
Sbjct: 61  SMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA 103

[Close]

BLAST of Csa1G263980 vs. NCBI nr
Match: gi|700210094|gb|KGN65190.1| (hypothetical protein Csa_1G263450 [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 1.1e-15
Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = 1


Query: 3   ASLKLPIIFLVCIAILALPVMTRT-----TTTLDQFSTKDVASVNCTVFTFEATKCMIDV 62
           ++++L I+FLVCI ILA  V  RT     +  L  F   D +  NC  F  EAT C++DV
Sbjct: 10  STIRLAIVFLVCIVILAPSVTARTMAEAPSPVLVLFDEDDSSFSNCAPFILEATMCVVDV 69

Query: 63  MKNSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICEL 101
           +K  +  HPSCC+AI  LNDC P++Y+ +P  D  +IKKIC L
Sbjct: 70  IKLPVASHPSCCKAISDLNDCAPQIYQHIPDMD--VIKKICGL 110

[Close]

BLAST of Csa1G263980 vs. NCBI nr
Match: gi|700210000|gb|KGN65096.1| (hypothetical protein Csa_1G212820 [Cucumis sativus])

HSP 1 Score: 89.4 bits (220), Expect = 4.1e-15
Identity = 42/104 (40.38%), Postives = 60/104 (57.69%), Query Frame = 1


Query: 4   SLKLPIIFLVCIAILALPV----MTRTTTTLDQFSTKDVASVNCTVFTFEATKCMIDVMK 63
           ++KL ++F+ C AI A P     +    T    F T+D++   C  F  EATKCMIDV K
Sbjct: 10  TMKLILVFICCTAIFAPPAAAMKVAMAPTQPQPFPTEDISFFPCFSFVPEATKCMIDVFK 69

Query: 64  NSMPPHPSCCRAILKLNDCNPEVYKDVPSTDKKLIKKICELWGA 104
           + +  HP+CC+AI KL  C+   +  +PS D  +IK +C  WGA
Sbjct: 70  HPIAAHPTCCKAISKLKSCSSSFFNGIPSADMIVIKSVCTSWGA 113

The following BLAST results are available for this feature:

BLAST of Csa1G263980 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTE1_CUCSA	1.0e-52	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263980 PE=4 SV=1	[more]
A0A0A0LTD6_CUCSA	7.6e-16	45.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G263450 PE=4 SV=1	[more]
A0A0A0LYQ3_CUCSA	2.9e-15	40.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G212820 PE=4 SV=1	[more]

BLAST of Csa1G263980 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210099\|gb\|KGN65195.1\|	1.5e-52	100.00	hypothetical protein Csa_1G263980 [Cucumis sativus]	[more]
gi\|700210094\|gb\|KGN65190.1\|	1.1e-15	45.63	hypothetical protein Csa_1G263450 [Cucumis sativus]	[more]
gi\|700210000\|gb\|KGN65096.1\|	4.1e-15	40.38	hypothetical protein Csa_1G212820 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU090558	cucumber EST collection version 3.0	transcribed_cluster
CU109130	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G263980.1	Csa1G263980.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU090558	CU090558	transcribed_cluster
CU109130	CU109130	transcribed_cluster

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G263980	Bhi02G000741	Wax gourd	cuwgoB099

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G263980	Melon (DHL92) v3.6.1	cumedB049
Csa1G263980	Silver-seed gourd	carcuB0133
Csa1G263980	Silver-seed gourd	carcuB0602
Csa1G263980	Watermelon (97103) v2	cuwmbB066
Csa1G263980	Cucumber (Chinese Long) v2	cucuB009
Csa1G263980	Cucumber (Gy14) v1	cgycuB095
Csa1G263980	Cucumber (Gy14) v1	cgycuB491
Csa1G263980	Cucurbita maxima (Rimu)	cmacuB060
Csa1G263980	Cucurbita maxima (Rimu)	cmacuB100
Csa1G263980	Cucurbita moschata (Rifu)	cmocuB048
Csa1G263980	Cucurbita moschata (Rifu)	cmocuB088
Csa1G263980	Melon (DHL92) v3.5.1	cumeB057
Csa1G263980	Watermelon (Charleston Gray)	cuwcgB067
Csa1G263980	Watermelon (97103) v1	cuwmB080
Csa1G263980	Cucurbita pepo (Zucchini)	cpecuB350
Csa1G263980	Cucurbita pepo (Zucchini)	cpecuB636
Csa1G263980	Bottle gourd (USVL1VR-Ls)	culsiB011
Csa1G263980	Bottle gourd (USVL1VR-Ls)	culsiB073
Csa1G263980	Cucumber (Gy14) v2	cgybcuB003