Csa1G256200 (gene) Cucumber (Chinese Long) v2

NameCsa1G256200
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionEukaryotic translation initiation factor 5A; contains IPR001884 (Translation elongation factor IF5A)
LocationChr1 : 12524959 .. 12528272 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGAACGACTAATCCAACGGTCACGATTTCATCTCTCTCAATTGGAGACTTGGGCCTCTGAAAAGCCTACAGGAATATTATAGCCGATCACTTCGTCGTCTACAACGTCTTCAGAGACGGAACATTCACAACTGTGTGTGAAACCAAAAATAGGGAAACGCCGGTGCAGCGATGTCGGACGAGGAGCACCACTTCGACTCCAAGGCCGACGCCGGAGCTTCCAAGACTTTTCCTCAGCAGGCTGGAGCCATTCGCAAAAATGGCTACATCGTAATCAAGAACAGACCCTGCAAGGTGTCCAACTTCTTTTTTCTTTTTTCTTTCTTTATTCTTTTGAATCATGAAAGTGGGTTGTTCTTTATATTTTCTCTGAAAGGGTATTCGTTCGGTTGTTTGCTAATTTTGTTGGTTCTATTTCTAAGTGAACATGGTCCTTAACTTTTAACTCTGTGACTACTGATTATGGTAATTGTTACTGTTATTCATGGTTTCTCTGATTCACTTAAGTTTCCCCCTTACTTTCTCTTTGGTTGGACCTTGTGCTTTCGGGGTATTTAAAGTTTGATGAATTGAGAGAAAGATTTGTCGTCGTACACAACTATAGTGGGTGAAACTCTTTTTCTTGAAACGAAGGGATTTTTGGTTATAAGAGGAAGACTGGGACCGTTTACTTATGTATTATGTGTTATCCGCTTCAAGGTTAGCGTAGTTCAACTTACATGACATTAGGTTTGAATCCTTCACCTATGTTGAACAATTTCAGTGGGTTGAAGAGGTTGTGCAAGATCTGATTTAACTGCAAGGCTATGAAATTTCAGGGTTAATGGTTGATTATCTATAATGGCGTTGGCAAGTAATTATTTCACCCAATTTGGATTGGTTTGTCTCAAATGTAGCTTGAGCGTGCATTTTATTTAGTAAATTTTTTGAGCTGGACTTGGCCTAAGAGGTGGATGCCAGGCTAAAATGCTAATAGTGGATATATTTCTCATGCTGCATTTGTCTTTTGTGAGAGTACTAACTAGTAGGGATATATATATTGGTAATATTAGTATGGTAGTAGTTGGGACATATGAGTATTAACTAGTGTTGTTTGGATATAAATGACAGGAGTTGGGCATCTTAGAGGGGGATGGATCATTTTGTTGAGAGTTTCCATTGTAGGACTTTGATAGAGAGAGATAACCCTATTGAAAGGCTATTGGTATATTGCAACTTCTCTTGATATTGCAATATATTACTATCTTTGAATTTTATGTTGTAACGAAATGTCTTTGAAGCATTAGCAAAGCTTTTCTTTTCAAGAAAGAACTATGCTATTGCATGTCATCTTTTTTGTGTGATCACATGATACAATGTCCATGGTTATAGTTCCATTTGCCATGGGGGACTCGGCATTCCTTTTGTAGTCTTCTTTGGGCAGTGCTATAAGAACAGTTACATGCCCGAAGAAGATTAAATTTCTTCTTTGGGAACTTTTATACGAAGCTTTCGACACCAAGGATCTCCTTCAAAGACACACGCCATTCATGGAAATTTCACCCAGTTGGTGCACGTTGTGTAAACTGGATGATGAATTTCAAAACTTCATTTTCATTCACGTTTGTTTTCTTGTTATTTTTGGAGCAGAGTGCATAAAGCTTTTGGGTGGTCTCCTGTTCTTCCTACGGATGTTAAGGGTTTCCTGATCATTATCCTAGTGAGCCACCCCTTTTGGAGAGCCAAAGCATTGCTGTGGATGCATGTATCTGTGGCCTTCTTTTGGGTTCCATGGAAGGATAGAAATCAAAGAGTCTTTTTGGATAAAGAGCACCCGTTTGAAGTGTTTTTTGACCTCGTTATTTATTATGCTATTTCTTGATGTAAATTGTCTAATCTATTTGCTTTGTATGGCTACGCTTCCCTTTTAATCTACCGAGAAAGCCTTTTATAATCCTCATGAAGCCTTTTATAATCCTCATGGATTTCTAATCATTTTTTTGTAAATTTCTCAGAATTTCATACATCAACCAAATCGTTTCTTGTGTTAAAAAAATAGTTCTATTTCCCATTGAGGGTTTTCTGAAATGTGCCATGCATACACAAAATAGTATGTTTTCAAGCCACTTGCCAAGCATATTATGCTGCCATATAATACCTTTTTCCCCCCAACTCTTTTCCTTTCAGGTAGTTGAAGTTTCTACTTCAAAAACTGGCAAACATGGGCATGCAAAGTGCCACTTTGTGGCAATTGACATATTCAATGGGAAGAAACTTGAAGATATTGTTCCTTCTTCTCACAACTGTGATGTAATTTCTTTGTCACTTACTTATTATGCTCTACTTATCTAAGTACTGAATTTTTTTTGTCTAAAAATCTTTGCATGTATTCTCTTTTGTTATTTTAATATACATGTTTCTTATCCAAAAAAACTATACCTTTGCAGGTTCCCCATGTTAATCGCACCGATTATCAGCTGATCGACATATCTGAGGATGGTTTTGTAAGTTTTAATTATATTTTTACATGATTTTGCTTTGTATACGAAAGTTTAGATCAATTTCTCTGTCTATCGCTTCAATAAATATTCAAGAAATGTAACCAAAGAGTACATGAAGAAAGGAGGGAGCCTTGCAGTCTTAACCTATATATTGATTTCATTAGTTTATTTTTGCAGGTCAGTCTCCTTACTGAAAATGGAAACACCAAGGATGACCTGAGGCTTCCCACCGATGATAACCTGCTTACGCAGGTACATAAATGATAATATACCGTTACATTTACAAATCTTCAAGTCATTGCCATATAGCTCTCTGCAACGCCATAAATTTTTTCATTCAATTTCATGTTGATAGCTTAAAGATGGGTTCGCTGAAGGCAAAGATCTCGTACTAACTGTCATGTCTGCAATGGGAGAAGAGCAGATCTGTGCTCTCAAGGACATTGGTCCTAAAAATTAAATACAGGGCTACGGCTACACCTGACGATGGCTCAGTGTCATCAGGAGTCCTATCAAGTATGCTTATATGTAATAAAAACATATTATCAGCTGTGAAATTAAAAGCTTAAACATCCATGAAGCTTCTTTCAATGGGAAAATATTATAGGAAATGTTGAACCTGCTGATATCCTTGCAACTCTGATGAAAGGATTACATACATTTCACTCTTCTTTTATATAGTACAATACTTATAAAATCTGTTATCCTCTCGTTTTCTGTCATTTGAATACCCTTGTGAATTGCCTTAGATGTTGGATTCTGCTCATTCAAAACAGTTGTGCTGTTCATTGGGCCACTCTCTCCTTTTTCTTTTGTACAAAGGCTTGTTATTCC

mRNA sequence

ATGTCGGACGAGGAGCACCACTTCGACTCCAAGGCCGACGCCGGAGCTTCCAAGACTTTTCCTCAGCAGGCTGGAGCCATTCGCAAAAATGGCTACATCGTAATCAAGAACAGACCCTGCAAGGTAGTTGAAGTTTCTACTTCAAAAACTGGCAAACATGGGCATGCAAAGTGCCACTTTGTGGCAATTGACATATTCAATGGGAAGAAACTTGAAGATATTGTTCCTTCTTCTCACAACTGTGATGTTCCCCATGTTAATCGCACCGATTATCAGCTGATCGACATATCTGAGGATGGTTTTGTCAGTCTCCTTACTGAAAATGGAAACACCAAGGATGACCTGAGGCTTCCCACCGATGATAACCTGCTTACGCAGCTTAAAGATGGGTTCGCTGAAGGCAAAGATCTCGTACTAACTGTCATGTCTGCAATGGGAGAAGAGCAGATCTGTGCTCTCAAGGACATTGGTCCTAAAAATTAA

Coding sequence (CDS)

ATGTCGGACGAGGAGCACCACTTCGACTCCAAGGCCGACGCCGGAGCTTCCAAGACTTTTCCTCAGCAGGCTGGAGCCATTCGCAAAAATGGCTACATCGTAATCAAGAACAGACCCTGCAAGGTAGTTGAAGTTTCTACTTCAAAAACTGGCAAACATGGGCATGCAAAGTGCCACTTTGTGGCAATTGACATATTCAATGGGAAGAAACTTGAAGATATTGTTCCTTCTTCTCACAACTGTGATGTTCCCCATGTTAATCGCACCGATTATCAGCTGATCGACATATCTGAGGATGGTTTTGTCAGTCTCCTTACTGAAAATGGAAACACCAAGGATGACCTGAGGCTTCCCACCGATGATAACCTGCTTACGCAGCTTAAAGATGGGTTCGCTGAAGGCAAAGATCTCGTACTAACTGTCATGTCTGCAATGGGAGAAGAGCAGATCTGTGCTCTCAAGGACATTGGTCCTAAAAATTAA

Protein sequence

MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKN*
BLAST of Csa1G256200 vs. Swiss-Prot
Match: IF5A_MANES (Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2)

HSP 1 Score: 312.0 bits (798), Expect = 3.8e-84
Identity = 148/160 (92.50%), Postives = 155/160 (96.88%), Query Frame = 1

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHF+SKADAGASKTFPQQAG IRKNGYIVIKNRPCKV+EVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVMEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           V IDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTE GNTKDDLRLPTD
Sbjct: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKN 161
           +NLL+Q+KDGFAEGKDLV++VMSAMGEE+IC+LKDIGPKN
Sbjct: 121 ENLLSQIKDGFAEGKDLVVSVMSAMGEERICSLKDIGPKN 160

BLAST of Csa1G256200 vs. Swiss-Prot
Match: IF5A2_NICPL (Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia GN=EIF-5A2 PE=2 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 1.9e-83
Identity = 149/159 (93.71%), Postives = 153/159 (96.23%), Query Frame = 1

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEH F+SKADAGASKT+PQQAG IRKNG+IVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKNGHIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIF GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 160
           DNLLTQ+KDGFAEGKDLV++VMSAMGEEQICALKDIGPK
Sbjct: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159

BLAST of Csa1G256200 vs. Swiss-Prot
Match: IF5A1_TOBAC (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum GN=EIF-5A1 PE=3 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 3.2e-83
Identity = 147/159 (92.45%), Postives = 152/159 (95.60%), Query Frame = 1

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHF+SKADAGASKT+PQQAG IRKNG+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIF GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 160
           DNLL  +KDGFAEGKDLVL+VMSAMGEEQIC +KD+GPK
Sbjct: 121 DNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159

BLAST of Csa1G256200 vs. Swiss-Prot
Match: IF5A1_NICPL (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia GN=EIF-5A1 PE=2 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 3.2e-83
Identity = 147/159 (92.45%), Postives = 152/159 (95.60%), Query Frame = 1

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHF+SKADAGASKT+PQQAG IRKNG+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIF GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 160
           DNLL  +KDGFAEGKDLVL+VMSAMGEEQIC +KD+GPK
Sbjct: 121 DNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159

BLAST of Csa1G256200 vs. Swiss-Prot
Match: IF5A5_SOLTU (Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum GN=EIF5A5 PE=2 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 9.4e-83
Identity = 147/159 (92.45%), Postives = 152/159 (95.60%), Query Frame = 1

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHF+SKADAGASKT+PQQAG IRK+G+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKSGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIF GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 160
           D LL Q+KDGFAEGKDLVL+VMSAMGEEQIC +KDIGPK
Sbjct: 121 DTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159

BLAST of Csa1G256200 vs. TrEMBL
Match: A0A0A0LTB3_CUCSA (Eukaryotic translation initiation factor 5A OS=Cucumis sativus GN=Csa_1G256200 PE=3 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 2.6e-87
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 1

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKN 161
           DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKN
Sbjct: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKN 160

BLAST of Csa1G256200 vs. TrEMBL
Match: A0A067L3L6_JATCU (Eukaryotic translation initiation factor 5A OS=Jatropha curcas GN=JCGZ_04027 PE=3 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 7.0e-85
Identity = 154/160 (96.25%), Postives = 158/160 (98.75%), Query Frame = 1

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFDSKADAGASKTFPQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           V IDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKN 161
           +NLL+Q+KDGFAEGKDLV+TVMSAMGEEQICALKDIGPKN
Sbjct: 121 ENLLSQIKDGFAEGKDLVVTVMSAMGEEQICALKDIGPKN 160

BLAST of Csa1G256200 vs. TrEMBL
Match: A0A061GK81_THECC (Eukaryotic translation initiation factor 5A OS=Theobroma cacao GN=TCM_037062 PE=3 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 7.0e-85
Identity = 154/160 (96.25%), Postives = 158/160 (98.75%), Query Frame = 1

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFDSKADAGASKTFPQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           V IDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKN 161
           +NLL+Q+KDGFAEGKDLV+TVMSAMGEEQICALKDIGPKN
Sbjct: 121 ENLLSQIKDGFAEGKDLVVTVMSAMGEEQICALKDIGPKN 160

BLAST of Csa1G256200 vs. TrEMBL
Match: A5BZP4_VITVI (Eukaryotic translation initiation factor 5A OS=Vitis vinifera GN=VIT_11s0016g00020 PE=3 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 3.5e-84
Identity = 153/160 (95.62%), Postives = 158/160 (98.75%), Query Frame = 1

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFDSKADAGASKT+PQQAGAIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFDSKADAGASKTYPQQAGAIRKNGYIVIKARPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           V IDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKN 161
           DNLL+Q+KDGFA+GKDLV+TVMSAMGEEQICALKDIGPKN
Sbjct: 121 DNLLSQIKDGFADGKDLVVTVMSAMGEEQICALKDIGPKN 160

BLAST of Csa1G256200 vs. TrEMBL
Match: J7F320_CAMSI (Eukaryotic translation initiation factor 5A OS=Camellia sinensis PE=2 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 5.9e-84
Identity = 153/160 (95.62%), Postives = 157/160 (98.12%), Query Frame = 1

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHF+SKADAGASKT+PQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKN 161
           D LLTQ+KDGF EGKDLV+TVMSAMGEEQICALKDIGPKN
Sbjct: 121 DVLLTQIKDGFGEGKDLVVTVMSAMGEEQICALKDIGPKN 160

BLAST of Csa1G256200 vs. TAIR10
Match: AT1G13950.1 (AT1G13950.1 eukaryotic elongation factor 5A-1)

HSP 1 Score: 284.6 bits (727), Expect = 3.7e-77
Identity = 138/159 (86.79%), Postives = 147/159 (92.45%), Query Frame = 1

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHF+S +DAGASKT+PQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFES-SDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIF  KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDG+VSLLT+NG+TKDDL+LP D
Sbjct: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPND 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 160
           D LL Q+K GF +GKDLV++VMSAMGEEQI ALKDIGPK
Sbjct: 121 DTLLQQIKSGFDDGKDLVVSVMSAMGEEQINALKDIGPK 158

BLAST of Csa1G256200 vs. TAIR10
Match: AT1G69410.1 (AT1G69410.1 eukaryotic elongation factor 5A-3)

HSP 1 Score: 280.8 bits (717), Expect = 5.3e-76
Identity = 134/159 (84.28%), Postives = 148/159 (93.08%), Query Frame = 1

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSD+EHHF+S +DAGASKT+PQQAG IRK G+IVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDDEHHFES-SDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIF  KKLEDIVPSSHNCDVPHVNR DYQLIDISEDGFVSLLT+NG+TKDDL+LPTD
Sbjct: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 160
           + LLTQLK+GF EGKD+V++VMSAMGEEQ+CALK++GPK
Sbjct: 121 EALLTQLKNGFEEGKDIVVSVMSAMGEEQMCALKEVGPK 158

BLAST of Csa1G256200 vs. TAIR10
Match: AT1G26630.1 (AT1G26630.1 Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein)

HSP 1 Score: 262.3 bits (669), Expect = 2.0e-70
Identity = 123/157 (78.34%), Postives = 142/157 (90.45%), Query Frame = 1

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSD+EHHF++ +++GASKT+PQ AG IRK G+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDDEHHFEA-SESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIF  KKLEDIVPSSHNCDVPHVNR DYQLIDI+EDGFVSLLT++G TKDDL+LPTD
Sbjct: 61  VAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIG 158
           D L  Q++ GF EGKD+V++VMS+MGEEQICA+K++G
Sbjct: 121 DGLTAQMRLGFDEGKDIVVSVMSSMGEEQICAVKEVG 156

BLAST of Csa1G256200 vs. NCBI nr
Match: gi|449457893|ref|XP_004146682.1| (PREDICTED: eukaryotic translation initiation factor 5A-2 [Cucumis sativus])

HSP 1 Score: 329.3 bits (843), Expect = 3.7e-87
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 1

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKN 161
           DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKN
Sbjct: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKN 160

BLAST of Csa1G256200 vs. NCBI nr
Match: gi|659086295|ref|XP_008443857.1| (PREDICTED: eukaryotic translation initiation factor 5A-2 [Cucumis melo])

HSP 1 Score: 325.9 bits (834), Expect = 4.1e-86
Identity = 158/160 (98.75%), Postives = 159/160 (99.38%), Query Frame = 1

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFDSKADAGASKTFPQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKN 161
           DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK+
Sbjct: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKS 160

BLAST of Csa1G256200 vs. NCBI nr
Match: gi|590572789|ref|XP_007011943.1| (Eukaryotic translation initiation factor 5A-1 [Theobroma cacao])

HSP 1 Score: 321.2 bits (822), Expect = 1.0e-84
Identity = 154/160 (96.25%), Postives = 158/160 (98.75%), Query Frame = 1

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFDSKADAGASKTFPQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           V IDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKN 161
           +NLL+Q+KDGFAEGKDLV+TVMSAMGEEQICALKDIGPKN
Sbjct: 121 ENLLSQIKDGFAEGKDLVVTVMSAMGEEQICALKDIGPKN 160

BLAST of Csa1G256200 vs. NCBI nr
Match: gi|225468027|ref|XP_002273265.1| (PREDICTED: eukaryotic translation initiation factor 5A [Vitis vinifera])

HSP 1 Score: 318.9 bits (816), Expect = 5.0e-84
Identity = 153/160 (95.62%), Postives = 158/160 (98.75%), Query Frame = 1

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFDSKADAGASKT+PQQAGAIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFDSKADAGASKTYPQQAGAIRKNGYIVIKARPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           V IDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKN 161
           DNLL+Q+KDGFA+GKDLV+TVMSAMGEEQICALKDIGPKN
Sbjct: 121 DNLLSQIKDGFADGKDLVVTVMSAMGEEQICALKDIGPKN 160

BLAST of Csa1G256200 vs. NCBI nr
Match: gi|357973570|gb|AET97661.1| (eukaryotic translation initiation factor 5A4 [Camellia sinensis])

HSP 1 Score: 318.2 bits (814), Expect = 8.5e-84
Identity = 153/160 (95.62%), Postives = 157/160 (98.12%), Query Frame = 1

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHF+SKADAGASKT+PQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKN 161
           D LLTQ+KDGF EGKDLV+TVMSAMGEEQICALKDIGPKN
Sbjct: 121 DVLLTQIKDGFGEGKDLVVTVMSAMGEEQICALKDIGPKN 160

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
IF5A_MANES3.8e-8492.50Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2[more]
IF5A2_NICPL1.9e-8393.71Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia GN=EI... [more]
IF5A1_TOBAC3.2e-8392.45Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum GN=EIF-5A1 PE... [more]
IF5A1_NICPL3.2e-8392.45Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia GN=EI... [more]
IF5A5_SOLTU9.4e-8392.45Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum GN=EIF5A5 PE=... [more]
Match NameE-valueIdentityDescription
A0A0A0LTB3_CUCSA2.6e-87100.00Eukaryotic translation initiation factor 5A OS=Cucumis sativus GN=Csa_1G256200 P... [more]
A0A067L3L6_JATCU7.0e-8596.25Eukaryotic translation initiation factor 5A OS=Jatropha curcas GN=JCGZ_04027 PE=... [more]
A0A061GK81_THECC7.0e-8596.25Eukaryotic translation initiation factor 5A OS=Theobroma cacao GN=TCM_037062 PE=... [more]
A5BZP4_VITVI3.5e-8495.63Eukaryotic translation initiation factor 5A OS=Vitis vinifera GN=VIT_11s0016g000... [more]
J7F320_CAMSI5.9e-8495.63Eukaryotic translation initiation factor 5A OS=Camellia sinensis PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT1G13950.13.7e-7786.79 eukaryotic elongation factor 5A-1[more]
AT1G69410.15.3e-7684.28 eukaryotic elongation factor 5A-3[more]
AT1G26630.12.0e-7078.34 Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein[more]
Match NameE-valueIdentityDescription
gi|449457893|ref|XP_004146682.1|3.7e-87100.00PREDICTED: eukaryotic translation initiation factor 5A-2 [Cucumis sativus][more]
gi|659086295|ref|XP_008443857.1|4.1e-8698.75PREDICTED: eukaryotic translation initiation factor 5A-2 [Cucumis melo][more]
gi|590572789|ref|XP_007011943.1|1.0e-8496.25Eukaryotic translation initiation factor 5A-1 [Theobroma cacao][more]
gi|225468027|ref|XP_002273265.1|5.0e-8495.63PREDICTED: eukaryotic translation initiation factor 5A [Vitis vinifera][more]
gi|357973570|gb|AET97661.1|8.5e-8495.63eukaryotic translation initiation factor 5A4 [Camellia sinensis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001884IF5A-like
IPR008991Translation_prot_SH3-like_sf
IPR012340NA-bd_OB-fold
IPR014722Rib_L2_dom2
IPR019769Trans_elong_IF5A_hypusine_site
IPR020189Transl_elong_IF5A_C
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003746translation elongation factor activity
GO:0043022ribosome binding
Vocabulary: Biological Process
TermDefinition
GO:0045901positive regulation of translational elongation
GO:0045905positive regulation of translational termination
GO:0006452translational frameshifting
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045901 positive regulation of translational elongation
biological_process GO:0045905 positive regulation of translational termination
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0006452 translational frameshifting
biological_process GO:0006413 translational initiation
cellular_component GO:0005840 ribosome
cellular_component GO:0005575 cellular_component
molecular_function GO:0043022 ribosome binding
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0003723 RNA binding
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU093966cucumber EST collection version 3.0transcribed_cluster
CU098589cucumber EST collection version 3.0transcribed_cluster
CU098945cucumber EST collection version 3.0transcribed_cluster
CU125583cucumber EST collection version 3.0transcribed_cluster
CU129033cucumber EST collection version 3.0transcribed_cluster
CU132603cucumber EST collection version 3.0transcribed_cluster
CU155353cucumber EST collection version 3.0transcribed_cluster
CU171201cucumber EST collection version 3.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G256200.1Csa1G256200.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU093966CU093966transcribed_cluster
CU098945CU098945transcribed_cluster
CU098589CU098589transcribed_cluster
CU132603CU132603transcribed_cluster
CU171201CU171201transcribed_cluster
CU155353CU155353transcribed_cluster
CU129033CU129033transcribed_cluster
CU125583CU125583transcribed_cluster


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001884Translation elongation factor IF5APIRPIRSF003025Transl_init_eIF5Acoord: 1..157
score: 5.9
IPR001884Translation elongation factor IF5APANTHERPTHR11673TRANSLATION INITIATION FACTOR 5A-RELATEDcoord: 2..159
score: 4.1E
IPR001884Translation elongation factor IF5ATIGRFAMsTIGR00037TIGR00037coord: 18..153
score: 3.9
IPR008991Translation protein SH3-like domainunknownSSF50104Translation proteins SH3-like domaincoord: 15..93
score: 3.66
IPR012340Nucleic acid-binding, OB-foldGENE3DG3DSA:2.40.50.140coord: 86..158
score: 5.2
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 86..156
score: 2.74
IPR014722Ribosomal protein L2 domain 2GENE3DG3DSA:2.30.30.30coord: 15..84
score: 8.5
IPR019769Translation elongation factor, IF5A, hypusine sitePROSITEPS00302IF5A_HYPUSINEcoord: 50..57
scor
IPR020189Translation elongation factor, IF5A C-terminalPFAMPF01287eIF-5acoord: 85..154
score: 2.5
IPR020189Translation elongation factor, IF5A C-terminalSMARTSM01376eIF_5a_2coord: 85..154
score: 1.6
NoneNo IPR availablePANTHERPTHR11673:SF8SUBFAMILY NOT NAMEDcoord: 2..159
score: 4.1E