CSPI01G17680 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G17680
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionEukaryotic translation initiation factor 5A
LocationChr1 : 13315340 .. 13319014 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTAAAATCGAGTAATTGCCATTTTCATTCGTAAGGTTTAAATTGAATGGAAATATATGCTTTTATTCTCTTTGAGGAAGAAAAGAAAAAGAGGAGTTGAAAAAGCAGTTAGAAAACGGCGATGGGATTGCGGGAACGACTAATCCAACGGTCACGATTTCATCTCTCTCAATTGGAGACTTGGGCCTCTGAAAAGCCTACAGGAATATTATAGCCGATCACTTCGTCGTCTACAACGTCTTCAGAGACGGAACATTCACAACTGTGTGTGAAACCAAAAATAGGGAAACGCCGGTGCAGCGATGTCGGACGAGGAGCACCACTTCGACTCCAAGGCCGACGCCGGAGCTTCCAAGACTTTTCCTCAGCAGGCTGGAGCCATTCGCAAAAATGGCTACATCGTAATCAAGAACAGACCCTGCAAGGTGTCCAACTTCTTTTTTCTTTTTTCTTTCTTTATTCTTTTGAATCATGAAAGTGGGTTGTTCTTTATATTTTCTCTGAAAGGGTATTCGTTCGGTTGTTTGCTAATTTTGTTGGTTCTATTTCTAAGTGAACATGGTCCTTAACTTTTAACTCTGTGACTACTGATTATGGTAATTGTTACTGTTATTCATGGTTTCTCTGATTCACTTAAGTTTCCCCCTTACTTTCTCTTTGGTTGGACCTTGTGCTTTCGGGGTATTTAAAGTTTGATGAATTGAGAGAAAGATTTGTCGTCGTACACAACTATAGTGGGTGAAACTCTTTTTCTTGAAACGAAGGGATTTTTGGTTATAAGAGAAAGACTGGGACCGTTTACTTATGTATTATGTGTTATCCGCTTCAAGGTTAGCGTAGTTCAACTTACATGACATTAGGTTTGAATCCTTCACCTATGTTGAACAATTTCAGTGGGTTGAAGAGGTTGTGCAAGATCTGATTTAACTGCAAGGCTATGAAATTTCAGGGTTAATGGTTGATTATCTATAATGGCGTTGGCAAGTAATTATTTCACCCAATTTGGATTGGTTTGTCTCAAATGTAGCTTGAGCGTGCATTTTATTTAGTAAATTTTTTGAGCTGGACTTGGCCTAAGAGGTGGATGCCAGGCTAAAATGCTAATAGTGGATATATTTCTCATGCTGCATTTGTCTTTTGTGAGAGTACTAACTAGTAGGGATATATATATTGGTAATATTAGTATGGTAGTAGTTGGGACATATGAGTATTAACTAGTGTTGTTTGGATATAAATGACAGGAGTTGGGCATCTTAGAGGGGGATGGATCATTTTGTTGAGAGTTTCCATTGTAGGACTTTGATAGAGAGAGATAACCCTATTGAAAGGCTATTGGTATATTGCAACTTCTCTTGATATTGCAATATATTACTATCTTTGAATTTTATGTTGTAACGAAATGTCTTTGAAGCATTAGCAAAGCTTTTCTTTTCAAGAAAGAACTATGCTATTGCATGTCATCTTTTTTGTGTGATCACATGATACAATGTCCATGGTTATAGTTCCATTTGCCATGGGGGACTCGGCATTCCTTTTGTAGTCTTCTATGGGCAGTGCTATAAGAACAGTTACATGCCCGAAGAAGATTAAATTTCTTCTTTGGGAACTTTTATACGAAGCTTTCGACACCAAGGATCTCCTTCAAAGACACACGCCATTCATGGAAATTTCACCCAGTTGGTGCACGTTGTGTAAACTGGATGATGAATTTCAAAACTTCATTTTCATTCGCGTTTGTTTTCTTGTTATTTTTGGAGCAGAGTGCATAAAGCTTTTGGGTGGTCTCCTGTTCTTCCTACGGATGTTAAGGGTTTCCTGATCATTATCCTAGTGAGCCACCCCTTTTGGAGAGCCAAAGCATTGCTGTGGATGCATGCATCTGTGGCCTTCTTTTGGGTTCCATGGAAGGATAGAAATCAAAGAGTCTTTTTGGATAAAGAGCACCCGTTTGAAGTGTTTTTTGACCTCGTTATTTATTATGCTATTTCTTGATGTAAATTGTCTAATCTATTTGCTTTGTATGGCTATGCTTCCCTTTTAATCTACTGAGAAAGCCTTTTATAATCCTCATGGATTTCTAATCATTTTTTTGTAAATTTCTCAGAATTTCATACATCAACCAAATCGTTTCTTGTGTTAAAAAAATAGTTCTATTTCCCATTGAGGGTTTTCTGAAATGTGCCATGCATACACAAAATAGTATGTTTTCAAGCCACTTGCCAAGCATATTATGCTGCCATATAATACCTTTTTCCCCCCAACTCTTTTCCTTTCAGGTAGTTGAAGTTTCTACTTCAAAAACTGGCAAACATGGGCATGCAAAGTGCCACTTTGTGGCAATTGACATATTCAATGGGAAGAAACTTGAAGATATTGTTCCTTCTTCTCACAACTGTGATGTAATTTCTTTGTCACTTACTTATTATGCTCTACTTATCTAAGTACTGAATTTTGTTTGTCTAAAAGTCTTTGCATGTATTCTCTTTTGTTATTTTAATATACATGTTTCTTATCCAAAAAAACTTTACCTTTGCAGGTTCCCCATGTTAATCGCACCGATTATCAGCTGATCGACATATCTGAGGATGGTTTTGTAAGTTTTAATTATATTTTTACATGATTTTGCTTTGTATACGAAAGTTTAGATCAATTTCTCTGTCTATCGCTTCAATAAATGTTCGAGAAATATAACCAAAGAGTACATGAAGAAAGGAGGGATCCTTGCAGTCTTAACCTATATATTGATTTCATTAGTTTATTTTTGCAGGTCAGTCTCCTTACTGAAAATGGAAACACCAAGGATGACCTGAGGCTTCCCACCGATGATAACCTGCTTACGCAGGTACATAAATGATAATATACCGTTACATTTACAAATCTTCAAGTCATTGCCATATAGCTCTCTGCAACGCCATAAATTTTTTCATTCAATTTCATGTTGATAGCTTAAAGATGGGTTCGCTGAAGGCAAAGATCTCGTACTAACTGTCATGTCTGCAATGGGAGAAGAGCAGATCTGTGCTCTCAAGGACATTGGTCCTAAAAATTAAATACAGGGCTACGGCTACACCTGACGATGGCTCAGCGTCATCAGGAGTCCTATCAAGTATATGCTTATATGTAATAAAAACATATTATCAGCTGTGAAATTAAAAGCTTAAACATCCATGAAGCTTCTTTCAATGGGAAAATATTATAGGAAATGTTGAACCTGCTGATATCCTTGCAACTCTGATGAAAGGATTACATACATTTCACTCTTCTTTTATATAGTACAATACTTATAAAATCGGTTATCCTCTCGTTTTCTGTCATTTGAATACCCTTGTGAATTGCCTTAGATGTTGGATTCTGCTCATTCAAAACAGTTGTGCTGTTCATTGGGCCACTCTCTCCTTTTTCTTTTGTACAAAGGCTTGTTATTCCGAAAATCTTTCAACAGAGAAGGTTGAACCAACTCTAATTTCCTACATACTATATGTATCTTTGAAAGTTGTCCACCCGAATTTGCCGCCTTGGTTAGAAAGGAATGAATCTCAACCAATGCAAAGAGAAGGGAGTGCTTGAAGGCCATTTAAGCTGATCTTGATTGAGTGGCTGTTGTTTCCTAGAACCAAAAGTGCAAAGGCTTGGCCCAACTGATATGATGGCTTTATAATTATTGTCTTAAAGGCC

mRNA sequence

ATGTCGGACGAGGAGCACCACTTCGACTCCAAGGCCGACGCCGGAGCTTCCAAGACTTTTCCTCAGCAGGCTGGAGCCATTCGCAAAAATGGCTACATCGTAATCAAGAACAGACCCTGCAAGGTAGTTGAAGTTTCTACTTCAAAAACTGGCAAACATGGGCATGCAAAGTGCCACTTTGTGGCAATTGACATATTCAATGGGAAGAAACTTGAAGATATTGTTCCTTCTTCTCACAACTGTGATGTTCCCCATGTTAATCGCACCGATTATCAGCTGATCGACATATCTGAGGATGGTTTTGTCAGTCTCCTTACTGAAAATGGAAACACCAAGGATGACCTGAGGCTTCCCACCGATGATAACCTGCTTACGCAGCTTAAAGATGGGTTCGCTGAAGGCAAAGATCTCGTACTAACTGTCATGTCTGCAATGGGAGAAGAGCAGATCTGTGCTCTCAAGGACATTGGTCCTAAAAATTAA

Coding sequence (CDS)

ATGTCGGACGAGGAGCACCACTTCGACTCCAAGGCCGACGCCGGAGCTTCCAAGACTTTTCCTCAGCAGGCTGGAGCCATTCGCAAAAATGGCTACATCGTAATCAAGAACAGACCCTGCAAGGTAGTTGAAGTTTCTACTTCAAAAACTGGCAAACATGGGCATGCAAAGTGCCACTTTGTGGCAATTGACATATTCAATGGGAAGAAACTTGAAGATATTGTTCCTTCTTCTCACAACTGTGATGTTCCCCATGTTAATCGCACCGATTATCAGCTGATCGACATATCTGAGGATGGTTTTGTCAGTCTCCTTACTGAAAATGGAAACACCAAGGATGACCTGAGGCTTCCCACCGATGATAACCTGCTTACGCAGCTTAAAGATGGGTTCGCTGAAGGCAAAGATCTCGTACTAACTGTCATGTCTGCAATGGGAGAAGAGCAGATCTGTGCTCTCAAGGACATTGGTCCTAAAAATTAA
Homology
[Close]
BLAST of CSPI01G17680 vs. Swiss-Prot
Match: IF5A_MANES (Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2)

HSP 1 Score: 313.5 bits (802), Expect = 1.3e-84
Identity = 148/160 (92.50%), Postives = 157/160 (98.12%), Query Frame = 1 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHF+SKADAGASKTFPQQAG IRKNGYIVIKNRPCKV+EVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVMEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           V IDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTE GNTKDDLRLPTD
Sbjct: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKN 161
           +NLL+Q+KDGFAEGKDLV++VMSAMGEE+IC+LKDIGPKN
Sbjct: 121 ENLLSQIKDGFAEGKDLVVSVMSAMGEERICSLKDIGPKN 160

[Close]
BLAST of CSPI01G17680 vs. Swiss-Prot
Match: IF5A2_NICPL (Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia GN=EIF-5A2 PE=2 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 8.5e-84
Identity = 149/159 (93.71%), Postives = 155/159 (97.48%), Query Frame = 1 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEH F+SKADAGASKT+PQQAG IRKNG+IVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKNGHIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIF GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 160
           DNLLTQ+KDGFAEGKDLV++VMSAMGEEQICALKDIGPK
Sbjct: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159

[Close]
BLAST of CSPI01G17680 vs. Swiss-Prot
Match: IF5A1_TOBAC (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum GN=EIF-5A1 PE=3 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 1.4e-83
Identity = 147/159 (92.45%), Postives = 154/159 (96.86%), Query Frame = 1 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHF+SKADAGASKT+PQQAG IRKNG+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIF GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 160
           DNLL  +KDGFAEGKDLVL+VMSAMGEEQIC +KD+GPK
Sbjct: 121 DNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159

[Close]
BLAST of CSPI01G17680 vs. Swiss-Prot
Match: IF5A1_NICPL (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia GN=EIF-5A1 PE=2 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 1.4e-83
Identity = 147/159 (92.45%), Postives = 154/159 (96.86%), Query Frame = 1 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHF+SKADAGASKT+PQQAG IRKNG+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIF GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 160
           DNLL  +KDGFAEGKDLVL+VMSAMGEEQIC +KD+GPK
Sbjct: 121 DNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159

[Close]
BLAST of CSPI01G17680 vs. Swiss-Prot
Match: IF5A5_SOLTU (Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum GN=EIF5A5 PE=2 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 4.2e-83
Identity = 147/159 (92.45%), Postives = 154/159 (96.86%), Query Frame = 1 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHF+SKADAGASKT+PQQAG IRK+G+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKSGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIF GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 160
           D LL Q+KDGFAEGKDLVL+VMSAMGEEQIC +KDIGPK
Sbjct: 121 DTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159

[Close]
BLAST of CSPI01G17680 vs. TrEMBL
Match: A0A0A0LTB3_CUCSA (Eukaryotic translation initiation factor 5A OS=Cucumis sativus GN=Csa_1G256200 PE=3 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 8.8e-88
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 1 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKN 161
           DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKN
Sbjct: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKN 160

[Close]
BLAST of CSPI01G17680 vs. TrEMBL
Match: A0A067L3L6_JATCU (Eukaryotic translation initiation factor 5A OS=Jatropha curcas GN=JCGZ_04027 PE=3 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 2.4e-85
Identity = 154/160 (96.25%), Postives = 158/160 (98.75%), Query Frame = 1 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFDSKADAGASKTFPQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           V IDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKN 161
           +NLL+Q+KDGFAEGKDLV+TVMSAMGEEQICALKDIGPKN
Sbjct: 121 ENLLSQIKDGFAEGKDLVVTVMSAMGEEQICALKDIGPKN 160

[Close]
BLAST of CSPI01G17680 vs. TrEMBL
Match: A0A061GK81_THECC (Eukaryotic translation initiation factor 5A OS=Theobroma cacao GN=TCM_037062 PE=3 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 2.4e-85
Identity = 154/160 (96.25%), Postives = 158/160 (98.75%), Query Frame = 1 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFDSKADAGASKTFPQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           V IDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKN 161
           +NLL+Q+KDGFAEGKDLV+TVMSAMGEEQICALKDIGPKN
Sbjct: 121 ENLLSQIKDGFAEGKDLVVTVMSAMGEEQICALKDIGPKN 160

[Close]
BLAST of CSPI01G17680 vs. TrEMBL
Match: A5BZP4_VITVI (Eukaryotic translation initiation factor 5A OS=Vitis vinifera GN=VIT_11s0016g00020 PE=3 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 1.2e-84
Identity = 153/160 (95.62%), Postives = 158/160 (98.75%), Query Frame = 1 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFDSKADAGASKT+PQQAGAIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFDSKADAGASKTYPQQAGAIRKNGYIVIKARPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           V IDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKN 161
           DNLL+Q+KDGFA+GKDLV+TVMSAMGEEQICALKDIGPKN
Sbjct: 121 DNLLSQIKDGFADGKDLVVTVMSAMGEEQICALKDIGPKN 160

[Close]
BLAST of CSPI01G17680 vs. TrEMBL
Match: J7F320_CAMSI (Eukaryotic translation initiation factor 5A OS=Camellia sinensis PE=2 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 2.0e-84
Identity = 153/160 (95.62%), Postives = 157/160 (98.12%), Query Frame = 1 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHF+SKADAGASKT+PQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKN 161
           D LLTQ+KDGF EGKDLV+TVMSAMGEEQICALKDIGPKN
Sbjct: 121 DVLLTQIKDGFGEGKDLVVTVMSAMGEEQICALKDIGPKN 160

[Close]
BLAST of CSPI01G17680 vs. TAIR10
Match: AT1G13950.1 (AT1G13950.1 eukaryotic elongation factor 5A-1)

HSP 1 Score: 286.2 bits (731), Expect = 1.3e-77
Identity = 138/159 (86.79%), Postives = 149/159 (93.71%), Query Frame = 1 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHF+S +DAGASKT+PQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFES-SDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIF  KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDG+VSLLT+NG+TKDDL+LP D
Sbjct: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPND 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 160
           D LL Q+K GF +GKDLV++VMSAMGEEQI ALKDIGPK
Sbjct: 121 DTLLQQIKSGFDDGKDLVVSVMSAMGEEQINALKDIGPK 158

[Close]
BLAST of CSPI01G17680 vs. TAIR10
Match: AT1G69410.1 (AT1G69410.1 eukaryotic elongation factor 5A-3)

HSP 1 Score: 282.3 bits (721), Expect = 1.8e-76
Identity = 134/159 (84.28%), Postives = 150/159 (94.34%), Query Frame = 1 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSD+EHHF+S +DAGASKT+PQQAG IRK G+IVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDDEHHFES-SDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIF  KKLEDIVPSSHNCDVPHVNR DYQLIDISEDGFVSLLT+NG+TKDDL+LPTD
Sbjct: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK 160
           + LLTQLK+GF EGKD+V++VMSAMGEEQ+CALK++GPK
Sbjct: 121 EALLTQLKNGFEEGKDIVVSVMSAMGEEQMCALKEVGPK 158

[Close]
BLAST of CSPI01G17680 vs. TAIR10
Match: AT1G26630.1 (AT1G26630.1 Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein)

HSP 1 Score: 263.5 bits (672), Expect = 8.8e-71
Identity = 123/157 (78.34%), Postives = 144/157 (91.72%), Query Frame = 1 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSD+EHHF++ +++GASKT+PQ AG IRK G+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDDEHHFEA-SESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIF  KKLEDIVPSSHNCDVPHVNR DYQLIDI+EDGFVSLLT++G TKDDL+LPTD
Sbjct: 61  VAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIG 158
           D L  Q++ GF EGKD+V++VMS+MGEEQICA+K++G
Sbjct: 121 DGLTAQMRLGFDEGKDIVVSVMSSMGEEQICAVKEVG 156

[Close]
BLAST of CSPI01G17680 vs. NCBI nr
Match: gi|449457893|ref|XP_004146682.1| (PREDICTED: eukaryotic translation initiation factor 5A-2 [Cucumis sativus])

HSP 1 Score: 330.9 bits (847), Expect = 1.3e-87
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 1 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKN 161
           DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKN
Sbjct: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKN 160

[Close]
BLAST of CSPI01G17680 vs. NCBI nr
Match: gi|659086295|ref|XP_008443857.1| (PREDICTED: eukaryotic translation initiation factor 5A-2 [Cucumis melo])

HSP 1 Score: 327.4 bits (838), Expect = 1.4e-86
Identity = 158/160 (98.75%), Postives = 159/160 (99.38%), Query Frame = 1 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFDSKADAGASKTFPQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKN 161
           DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPK+
Sbjct: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKS 160

[Close]
BLAST of CSPI01G17680 vs. NCBI nr
Match: gi|590572789|ref|XP_007011943.1| (Eukaryotic translation initiation factor 5A-1 [Theobroma cacao])

HSP 1 Score: 322.8 bits (826), Expect = 3.4e-85
Identity = 154/160 (96.25%), Postives = 158/160 (98.75%), Query Frame = 1 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFDSKADAGASKTFPQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFDSKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           V IDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKN 161
           +NLL+Q+KDGFAEGKDLV+TVMSAMGEEQICALKDIGPKN
Sbjct: 121 ENLLSQIKDGFAEGKDLVVTVMSAMGEEQICALKDIGPKN 160

[Close]
BLAST of CSPI01G17680 vs. NCBI nr
Match: gi|225468027|ref|XP_002273265.1| (PREDICTED: eukaryotic translation initiation factor 5A [Vitis vinifera])

HSP 1 Score: 320.5 bits (820), Expect = 1.7e-84
Identity = 153/160 (95.62%), Postives = 158/160 (98.75%), Query Frame = 1 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFDSKADAGASKT+PQQAGAIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFDSKADAGASKTYPQQAGAIRKNGYIVIKARPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           V IDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKN 161
           DNLL+Q+KDGFA+GKDLV+TVMSAMGEEQICALKDIGPKN
Sbjct: 121 DNLLSQIKDGFADGKDLVVTVMSAMGEEQICALKDIGPKN 160

[Close]
BLAST of CSPI01G17680 vs. NCBI nr
Match: gi|357973570|gb|AET97661.1| (eukaryotic translation initiation factor 5A4 [Camellia sinensis])

HSP 1 Score: 319.7 bits (818), Expect = 2.9e-84
Identity = 153/160 (95.62%), Postives = 157/160 (98.12%), Query Frame = 1 

Query: 1   MSDEEHHFDSKADAGASKTFPQQAGAIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHF+SKADAGASKT+PQQAG IRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQLKDGFAEGKDLVLTVMSAMGEEQICALKDIGPKN 161
           D LLTQ+KDGF EGKDLV+TVMSAMGEEQICALKDIGPKN
Sbjct: 121 DVLLTQIKDGFGEGKDLVVTVMSAMGEEQICALKDIGPKN 160

The following BLAST results are available for this feature:
BLAST of CSPI01G17680 vs. Swiss-Prot
Match NameE-valueIdentityDescription
IF5A_MANES1.3e-8492.50Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2[more]
IF5A2_NICPL8.5e-8493.71Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia GN=EI... [more]
IF5A1_TOBAC1.4e-8392.45Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum GN=EIF-5A1 PE... [more]
IF5A1_NICPL1.4e-8392.45Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia GN=EI... [more]
IF5A5_SOLTU4.2e-8392.45Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum GN=EIF5A5 PE=... [more]
BLAST of CSPI01G17680 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTB3_CUCSA8.8e-88100.00Eukaryotic translation initiation factor 5A OS=Cucumis sativus GN=Csa_1G256200 P... [more]
A0A067L3L6_JATCU2.4e-8596.25Eukaryotic translation initiation factor 5A OS=Jatropha curcas GN=JCGZ_04027 PE=... [more]
A0A061GK81_THECC2.4e-8596.25Eukaryotic translation initiation factor 5A OS=Theobroma cacao GN=TCM_037062 PE=... [more]
A5BZP4_VITVI1.2e-8495.63Eukaryotic translation initiation factor 5A OS=Vitis vinifera GN=VIT_11s0016g000... [more]
J7F320_CAMSI2.0e-8495.63Eukaryotic translation initiation factor 5A OS=Camellia sinensis PE=2 SV=1[more]
BLAST of CSPI01G17680 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G13950.11.3e-7786.79 eukaryotic elongation factor 5A-1[more]
AT1G69410.11.8e-7684.28 eukaryotic elongation factor 5A-3[more]
AT1G26630.18.8e-7178.34 Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein[more]
BLAST of CSPI01G17680 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449457893|ref|XP_004146682.1|1.3e-87100.00PREDICTED: eukaryotic translation initiation factor 5A-2 [Cucumis sativus][more]
gi|659086295|ref|XP_008443857.1|1.4e-8698.75PREDICTED: eukaryotic translation initiation factor 5A-2 [Cucumis melo][more]
gi|590572789|ref|XP_007011943.1|3.4e-8596.25Eukaryotic translation initiation factor 5A-1 [Theobroma cacao][more]
gi|225468027|ref|XP_002273265.1|1.7e-8495.63PREDICTED: eukaryotic translation initiation factor 5A [Vitis vinifera][more]
gi|357973570|gb|AET97661.1|2.9e-8495.63eukaryotic translation initiation factor 5A4 [Camellia sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001884IF5A-like
IPR008991Translation_prot_SH3-like_sf
IPR012340NA-bd_OB-fold
IPR014722Rib_L2_dom2
IPR019769Trans_elong_IF5A_hypusine_site
IPR020189Transl_elong_IF5A_C
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003746translation elongation factor activity
GO:0043022ribosome binding
Vocabulary: Biological Process
TermDefinition
GO:0045901positive regulation of translational elongation
GO:0045905positive regulation of translational termination
GO:0006452translational frameshifting
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045901 positive regulation of translational elongation
biological_process GO:0045905 positive regulation of translational termination
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0006452 translational frameshifting
biological_process GO:0006413 translational initiation
cellular_component GO:0005840 ribosome
cellular_component GO:0005575 cellular_component
molecular_function GO:0043022 ribosome binding
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G17680.1CSPI01G17680.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001884Translation elongation factor IF5APIRPIRSF003025Transl_init_eIF5Acoord: 1..157
score: 5.9
IPR001884Translation elongation factor IF5APANTHERPTHR11673TRANSLATION INITIATION FACTOR 5A-RELATEDcoord: 2..159
score: 4.1E
IPR001884Translation elongation factor IF5ATIGRFAMsTIGR00037TIGR00037coord: 18..153
score: 3.9
IPR008991Translation protein SH3-like domainunknownSSF50104Translation proteins SH3-like domaincoord: 15..93
score: 3.66
IPR012340Nucleic acid-binding, OB-foldGENE3DG3DSA:2.40.50.140coord: 86..158
score: 5.2
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 86..156
score: 2.74
IPR014722Ribosomal protein L2 domain 2GENE3DG3DSA:2.30.30.30coord: 15..84
score: 8.5
IPR019769Translation elongation factor, IF5A, hypusine sitePROSITEPS00302IF5A_HYPUSINEcoord: 50..57
scor
IPR020189Translation elongation factor, IF5A C-terminalPFAMPF01287eIF-5acoord: 85..154
score: 2.5
IPR020189Translation elongation factor, IF5A C-terminalSMARTSM01376eIF_5a_2coord: 85..154
score: 1.6
NoneNo IPR availablePANTHERPTHR11673:SF8SUBFAMILY NOT NAMEDcoord: 2..159
score: 4.1E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G17680Cla018732Watermelon (97103) v1cpiwmB086
CSPI01G17680Csa1G256200Cucumber (Chinese Long) v2cpicuB004
CSPI01G17680Csa4G651970Cucumber (Chinese Long) v2cpicuB035
CSPI01G17680MELO3C010222Melon (DHL92) v3.5.1cpimeB053
CSPI01G17680ClCG06G012390Watermelon (Charleston Gray)cpiwcgB071
CSPI01G17680ClCG05G016320Watermelon (Charleston Gray)cpiwcgB070
CSPI01G17680Lsi06G011560Bottle gourd (USVL1VR-Ls)cpilsiB075
CSPI01G17680MELO3C016963.2Melon (DHL92) v3.6.1cpimedB072
CSPI01G17680MELO3C010222.2Melon (DHL92) v3.6.1cpimedB047
CSPI01G17680CsaV3_1G028950Cucumber (Chinese Long) v3cpicucB000
CSPI01G17680CsaV3_4G036580Cucumber (Chinese Long) v3cpicucB040
CSPI01G17680Cla97C05G097300Watermelon (97103) v2cpiwmbB067
CSPI01G17680Cla97C06G121600Watermelon (97103) v2cpiwmbB068
CSPI01G17680Bhi02G000688Wax gourdcpiwgoB099
CSPI01G17680Bhi09G002479Wax gourdcpiwgoB076
CSPI01G17680Cucsa.271540Cucumber (Gy14) v1cgycpiB407
CSPI01G17680Cucsa.093380Cucumber (Gy14) v1cgycpiB100
CSPI01G17680CmaCh11G004600Cucurbita maxima (Rimu)cmacpiB097
CSPI01G17680CmoCh11G004600Cucurbita moschata (Rifu)cmocpiB090
CSPI01G17680CsGy1G017860Cucumber (Gy14) v2cgybcpiB002
CSPI01G17680CsGy4G024590Cucumber (Gy14) v2cgybcpiB162
CSPI01G17680Carg14088Silver-seed gourdcarcpiB0539
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CSPI01G17680CSPI04G26250Wild cucumber (PI 183967)cpicpiB027
The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G17680Melon (DHL92) v3.6.1cpimedB051
CSPI01G17680Silver-seed gourdcarcpiB0138
CSPI01G17680Cucurbita maxima (Rimu)cmacpiB059
CSPI01G17680Cucurbita moschata (Rifu)cmocpiB051
CSPI01G17680Melon (DHL92) v3.5.1cpimeB057
CSPI01G17680Cucurbita pepo (Zucchini)cpecpiB351
CSPI01G17680Cucurbita pepo (Zucchini)cpecpiB640
CSPI01G17680Bottle gourd (USVL1VR-Ls)cpilsiB064