Csa1G228980 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G228980
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionCCR4-NOT transcription complex subunit 10-B
LocationChr1 : 11997772 .. 12000093 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACAACAAAAAAAAAAAGACGCATTTCAGCAAAACACAAGAAACCAGGTGTCCTCCTTTCCAATTAATCCATACTTTAGGGTTTCAAAAATCTTCAACTTCCATTGCTATCGAGCTTCTTCTTCTTCTTCTTCTTCTCCTCTTCGATTTCGTAGTTCAAAATCCCTCCCTTTACTACTTCTAATCCCACTGAGAATTTTGAACTTCGAAATTTTAGGGCTTCGTTCTTCTCCCCTTATCCGTCCACTCATTTCCTTCTTTTTCCAACCTGGCCCTTGGTTTTGTTTCTTTTATTTGGATCCGTTCATGGACGCTCGAGATTCATCTTCGTCCTCCGCCCTGAATCGGGATGGGTCCTCGTCGGCCGTTGAGGATGACGGTGCTTTATCCATCACCGCCGCTCTTGCTAGGGAGGCTGCCTCGCTTTTTCAATCGGGGAAGTATGTTGGGTGTGTAGAGGTCTTGAACCAGCTGTTGCAGAAGAAAGAAGACGATCCTAAGGTTTGATTTTTCTTCCACCGTAATCTAATTTTGTTTCTTTGTTTACCTTTCTTTTCCCCTTTTTGTTGAGTTTTATAGCTTGATGTAGGAATGATTTAATCCATTCTACAATTTCGTTAATCCTTCGTGTGTATGTGTGCAGATGCGGGTTAGTTTTTTTAATTCAGTGATGCGAAATGTTGAGCTCAGAAATAATTTGGGGCGCTTTTTTCTTTTGTCCCATTTTTCCACTTTAGCGAATGTTGAGATTTGAATGATTTGAGGACAACATGCTAGAACTAAGTGCAATTTCGTTGAATAGTTTGACTACGCCTAGGTTATTCTAAGAGGAAATGCAAATGGGTGGTGATTTTCATTGAATGTCATCATTTTCCTTGGGATAAATCTTATCCTTTATGATTATCTACTGGAATTTAGGCTGGGGTGGTGGTATTTCTGTTCGTACATTATTTCATTTTTTCTTTATTACTGGTTAATTTGAACGTTAAACCTTCTAGTCACAGAATTGTTACCTAAACCTTTGATGTGAAAGCGACACCAATAGAATTCCCCTAGCAACTGATGGCCTGGAAAATATTTGGGGTTTCAGCCGCATAACTAACAAGCATGGGCGATCAACTCCACTTAAGGCTCCATTATCATTTACGGAAGATGGGTTTTACATAATACCACGTCTTTATCTTACTGTACTTGTTCCCACTGCCTGATTCAATACTTTCAATCCCAAGCTCTTCACTTTTGAAGTATGAAAAATCTAGAGTGGTGAAAAAAATTAATGTAATATTGACCCTGCCAAGTGCTAATGACAACGAGAAACTTGTTGTTTTTGTTAGTCTGTCCAGTCTCCATTCAGTATAACTGTGTTCAGATTTCACATTGTTGGCAAAAAAGTGTTGAGTGGCTTTGAATCTGGTTGGCATTAATTATATTCCTCATGTATGTGACTAACTCCTAATCTTTGCTCTAAAGCACATGTCAATTGGTAACTGATGATTGATATAGAAAACAAATATTGTCATGAAGTTAAATCAGCTTCATGAGCAGATAATATTATGTGGAAGTGTTACATGCACTCTCCAATTATACTGCTATCCTCGGCTCCATAGAAGTTTATGTAGCGATTCTATTTTACTTTTCTAGTAGAAGATCAAATCCCGATTATTAATTCTAGTAATAGCTCACTCTACAACCTTGGCCCTTTTCTTACTTATAAGTAATCAATGGTTGCATATTTAAAGAGTGGCCTCAGGTTCCAGAATGAATTATGATAAGTGTTATGGCAATTCTTTTATTATTGTTTTTGTTGGGCTGTGAGGAAGGTTAAGGAGATTCTACCTTACCTTTTTGTTAGTTATACTACCACATTAATTTTAGGGAACAATATCTTTGGTTTTCGATATTTAGTCAATTGGCACTATTACAACTATTTTGTTTTAATTTTTTAACTTGACATATTCGGATAGGGTGTCTTTTGATATACATTGACGTTGGATTCTCGATAAATTGTGATTTTCTATGTTGATTTTGACTTCGATCCAATCTTTAGGACTGCATCTTTTATAAGGAGCTTAGTGGTATTTTGGTGTCATTGTTTTTTTGTTACTAAACTAGTTAGTTGCAATGGGTTTGGCTTATGTGCTTTAATTTTGATGCTTCATTTGACACTTCCTTAAAGAAAGAAAATATATCGGCCAGCACTTCATTTATAGGTGCCTTTCGCAGGTGCTTCATAATATTGCCATTGCCGAATACTTGAGGGATGGTTGTTCCAATCCAAAGAAGTTACTTGAAGTATTAAACAATGTGAAGGTATGCCATTAG

mRNA sequence

ATGGACGCTCGAGATTCATCTTCGTCCTCCGCCCTGAATCGGGATGGGTCCTCGTCGGCCGTTGAGGATGACGGTGCTTTATCCATCACCGCCGCTCTTGCTAGGGAGGCTGCCTCGCTTTTTCAATCGGGGAAGTATGTTGGGTGTGTAGAGGTCTTGAACCAGCTGTTGCAGAAGAAAGAAGACGATCCTAAGGTGCTTCATAATATTGCCATTGCCGAATACTTGAGGGATGGTTGTTCCAATCCAAAGAAGTTACTTGAAGTATTAAACAATGTGAAGGTATGCCATTAG

Coding sequence (CDS)

ATGGACGCTCGAGATTCATCTTCGTCCTCCGCCCTGAATCGGGATGGGTCCTCGTCGGCCGTTGAGGATGACGGTGCTTTATCCATCACCGCCGCTCTTGCTAGGGAGGCTGCCTCGCTTTTTCAATCGGGGAAGTATGTTGGGTGTGTAGAGGTCTTGAACCAGCTGTTGCAGAAGAAAGAAGACGATCCTAAGGTGCTTCATAATATTGCCATTGCCGAATACTTGAGGGATGGTTGTTCCAATCCAAAGAAGTTACTTGAAGTATTAAACAATGTGAAGGTATGCCATTAG

Protein sequence

MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKKEDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVKVCH*
Homology
[Close]
BLAST of Csa1G228980 vs. TrEMBL
Match: A0A0A0LWB8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G228980 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 5.1e-46
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 

Query: 1  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKK 60
          MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKK
Sbjct: 1  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKK 60

Query: 61 EDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVKVCH 98
          EDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVKVCH
Sbjct: 61 EDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVKVCH 97

[Close]
BLAST of Csa1G228980 vs. TrEMBL
Match: A0A061GMW2_THECC (Tetratricopeptide repeat-like superfamily protein OS=Theobroma cacao GN=TCM_038150 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 3.0e-30
Identity = 71/94 (75.53%), Postives = 81/94 (86.17%), Query Frame = 1 

Query: 1  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKK 60
          MD+RDSSSSSA NRDG+  A +DDG LS+TAALA++AA  FQS K+  CV+VLNQL  KK
Sbjct: 1  MDSRDSSSSSAPNRDGA--AADDDGVLSVTAALAKDAALYFQSRKFAECVDVLNQLKPKK 60

Query: 61 EDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK 95
          EDDPKVLHNIAIAE+ RDGCS+PKKLLEVLNNVK
Sbjct: 61 EDDPKVLHNIAIAEFFRDGCSDPKKLLEVLNNVK 92

[Close]
BLAST of Csa1G228980 vs. TrEMBL
Match: A5BUX0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020807 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.9e-29
Identity = 69/97 (71.13%), Postives = 82/97 (84.54%), Query Frame = 1 

Query: 1  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKK 60
          MD+RD+S SSA  RDG+S   +DD  LS+ A+LA++AA LFQS K+  C++VLNQLLQKK
Sbjct: 1  MDSRDTSLSSAATRDGASP--DDDAGLSVAASLAKDAALLFQSRKFSECLDVLNQLLQKK 60

Query: 61 EDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVKVCH 98
          EDDPKVLHNIAIAEY RDGCS+PKKLLEVLNNVKV +
Sbjct: 61 EDDPKVLHNIAIAEYFRDGCSDPKKLLEVLNNVKVIY 95

[Close]
BLAST of Csa1G228980 vs. TrEMBL
Match: F6HHB1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g05820 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 7.4e-29
Identity = 68/94 (72.34%), Postives = 80/94 (85.11%), Query Frame = 1 

Query: 1  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKK 60
          MD+RD+S SSA  RDG+S   +DD  LS+ A+LA++AA LFQS K+  C++VLNQLLQKK
Sbjct: 1  MDSRDTSLSSAATRDGASP--DDDAGLSVAASLAKDAALLFQSRKFSECLDVLNQLLQKK 60

Query: 61 EDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK 95
          EDDPKVLHNIAIAEY RDGCS+PKKLLEVLNNVK
Sbjct: 61 EDDPKVLHNIAIAEYFRDGCSDPKKLLEVLNNVK 92

[Close]
BLAST of Csa1G228980 vs. TrEMBL
Match: A0A0D2U5Y1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G235300 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 4.8e-28
Identity = 66/94 (70.21%), Postives = 79/94 (84.04%), Query Frame = 1 

Query: 1  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKK 60
          MD+RDSSSSS  NRDG++   +DDG LS+TAALA++AA  FQS K+  CV+VL QL  KK
Sbjct: 1  MDSRDSSSSSVPNRDGTAG--DDDGVLSVTAALAKDAALYFQSRKFAECVDVLTQLKTKK 60

Query: 61 EDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK 95
          E DPKVLHNIAIAE+LRDGCS+PKK+LEVLNN+K
Sbjct: 61 EGDPKVLHNIAIAEFLRDGCSDPKKMLEVLNNIK 92

[Close]
BLAST of Csa1G228980 vs. TAIR10
Match: AT5G35430.1 (AT5G35430.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 104.4 bits (259), Expect = 4.1e-23
Identity = 56/94 (59.57%), Postives = 69/94 (73.40%), Query Frame = 1 

Query: 1  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKK 60
          MD+RDS SS A+ RD SS + +D   LS+T+ LA+ A S FQSGK+  C++VL QL Q K
Sbjct: 1  MDSRDSLSSDAV-RDASSLS-DDAAVLSVTSTLAKTALSYFQSGKFEECIDVLIQLDQMK 60

Query: 61 EDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK 95
           +DPKVLHN+AIAEY +DGCSN +KL+EVL  VK
Sbjct: 61 HNDPKVLHNMAIAEYFKDGCSNSEKLVEVLKRVK 92

[Close]
BLAST of Csa1G228980 vs. NCBI nr
Match: gi|700210026|gb|KGN65122.1| (hypothetical protein Csa_1G228980 [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 7.3e-46
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 

Query: 1  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKK 60
          MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKK
Sbjct: 1  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKK 60

Query: 61 EDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVKVCH 98
          EDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVKVCH
Sbjct: 61 EDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVKVCH 97

[Close]
BLAST of Csa1G228980 vs. NCBI nr
Match: gi|449464972|ref|XP_004150203.1| (PREDICTED: CCR4-NOT transcription complex subunit 10 [Cucumis sativus])

HSP 1 Score: 183.3 bits (464), Expect = 2.0e-43
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 

Query: 1  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKK 60
          MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKK
Sbjct: 1  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKK 60

Query: 61 EDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK 95
          EDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK
Sbjct: 61 EDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK 94

[Close]
BLAST of Csa1G228980 vs. NCBI nr
Match: gi|659086470|ref|XP_008443951.1| (PREDICTED: CCR4-NOT transcription complex subunit 10 [Cucumis melo])

HSP 1 Score: 175.6 bits (444), Expect = 4.1e-41
Identity = 90/94 (95.74%), Postives = 91/94 (96.81%), Query Frame = 1 

Query: 1  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKK 60
          MDARDSSSSSA NRD SSSAVEDDGALSITAALA+EAASLFQSGKY GCVEVLNQLLQKK
Sbjct: 1  MDARDSSSSSAPNRDASSSAVEDDGALSITAALAKEAASLFQSGKYAGCVEVLNQLLQKK 60

Query: 61 EDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK 95
          EDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK
Sbjct: 61 EDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK 94

[Close]
BLAST of Csa1G228980 vs. NCBI nr
Match: gi|590578568|ref|XP_007013546.1| (Tetratricopeptide repeat-like superfamily protein [Theobroma cacao])

HSP 1 Score: 139.0 bits (349), Expect = 4.3e-30
Identity = 71/94 (75.53%), Postives = 81/94 (86.17%), Query Frame = 1 

Query: 1  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKK 60
          MD+RDSSSSSA NRDG+  A +DDG LS+TAALA++AA  FQS K+  CV+VLNQL  KK
Sbjct: 1  MDSRDSSSSSAPNRDGA--AADDDGVLSVTAALAKDAALYFQSRKFAECVDVLNQLKPKK 60

Query: 61 EDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK 95
          EDDPKVLHNIAIAE+ RDGCS+PKKLLEVLNNVK
Sbjct: 61 EDDPKVLHNIAIAEFFRDGCSDPKKLLEVLNNVK 92

[Close]
BLAST of Csa1G228980 vs. NCBI nr
Match: gi|147863828|emb|CAN83603.1| (hypothetical protein VITISV_020807 [Vitis vinifera])

HSP 1 Score: 136.3 bits (342), Expect = 2.8e-29
Identity = 69/97 (71.13%), Postives = 82/97 (84.54%), Query Frame = 1 

Query: 1  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKK 60
          MD+RD+S SSA  RDG+S   +DD  LS+ A+LA++AA LFQS K+  C++VLNQLLQKK
Sbjct: 1  MDSRDTSLSSAATRDGASP--DDDAGLSVAASLAKDAALLFQSRKFSECLDVLNQLLQKK 60

Query: 61 EDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVKVCH 98
          EDDPKVLHNIAIAEY RDGCS+PKKLLEVLNNVKV +
Sbjct: 61 EDDPKVLHNIAIAEYFRDGCSDPKKLLEVLNNVKVIY 95

The following BLAST results are available for this feature:
BLAST of Csa1G228980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LWB8_CUCSA5.1e-46100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G228980 PE=4 SV=1[more]
A0A061GMW2_THECC3.0e-3075.53Tetratricopeptide repeat-like superfamily protein OS=Theobroma cacao GN=TCM_0381... [more]
A5BUX0_VITVI1.9e-2971.13Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020807 PE=4 SV=1[more]
F6HHB1_VITVI7.4e-2972.34Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g05820 PE=4 SV=... [more]
A0A0D2U5Y1_GOSRA4.8e-2870.21Uncharacterized protein OS=Gossypium raimondii GN=B456_013G235300 PE=4 SV=1[more]
BLAST of Csa1G228980 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G35430.14.1e-2359.57 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of Csa1G228980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210026|gb|KGN65122.1|7.3e-46100.00hypothetical protein Csa_1G228980 [Cucumis sativus][more]
gi|449464972|ref|XP_004150203.1|2.0e-43100.00PREDICTED: CCR4-NOT transcription complex subunit 10 [Cucumis sativus][more]
gi|659086470|ref|XP_008443951.1|4.1e-4195.74PREDICTED: CCR4-NOT transcription complex subunit 10 [Cucumis melo][more]
gi|590578568|ref|XP_007013546.1|4.3e-3075.53Tetratricopeptide repeat-like superfamily protein [Theobroma cacao][more]
gi|147863828|emb|CAN83603.1|2.8e-2971.13hypothetical protein VITISV_020807 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006007 glucose catabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU160457cucumber EST collection version 3.0transcribed_cluster
CU171367cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G228980.1Csa1G228980.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU171367CU171367transcribed_cluster
CU160457CU160457transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domainGENE3DG3DSA:1.25.40.10coord: 32..75
score: 6.
NoneNo IPR availablePANTHERPTHR12979FAMILY NOT NAMEDcoord: 5..94
score: 1.9
NoneNo IPR availablePANTHERPTHR12979:SF5CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 10coord: 5..94
score: 1.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G228980Cla012209Watermelon (97103) v1cuwmB097
Csa1G228980ClCG06G011510Watermelon (Charleston Gray)cuwcgB084
Csa1G228980CSPI01G16700Wild cucumber (PI 183967)cpicuB000
Csa1G228980CmoCh11G005220Cucurbita moschata (Rifu)cmocuB078
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G228980Silver-seed gourdcarcuB0035
Csa1G228980Silver-seed gourdcarcuB0137
Csa1G228980Watermelon (97103) v2cuwmbB081
Csa1G228980Wax gourdcuwgoB084
Csa1G228980Cucumber (Gy14) v1cgycuB008
Csa1G228980Cucurbita maxima (Rimu)cmacuB052
Csa1G228980Cucurbita maxima (Rimu)cmacuB090
Csa1G228980Cucurbita moschata (Rifu)cmocuB041
Csa1G228980Melon (DHL92) v3.5.1cumeB047
Csa1G228980Cucurbita pepo (Zucchini)cpecuB365
Csa1G228980Cucurbita pepo (Zucchini)cpecuB657
Csa1G228980Bottle gourd (USVL1VR-Ls)culsiB074
Csa1G228980Cucumber (Gy14) v2cgybcuB009
Csa1G228980Melon (DHL92) v3.6.1cumedB038