CSPI01G16700 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G16700
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionCCR4-NOT transcription complex subunit 10
LocationChr1 : 12302478 .. 12304833 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAGTTTTTATTTAAGCTCACTTCATTCTCTTCGAAAAAACAACAAAAAAAAGACGCATTTCAGCAAAACACAAGAAACCAGGTGTCCTCCTTTCCAATTAATCCATACTTTAGGGTTTCAAAAATCTTCAACTTCCATTGCTATCGAGCTTCTTCTTCTTCTTCTTCTCCTCCTCTTCGATTTCGTAGTTCAAAATCCCTCCCTTTACTACTTCTAATCCCACTGAGAATTTTGAACTTCGAAATTTTAGGGCTTCGTTCTTCTCCCCTTATCCGTCCACTCATTTCCTTCTTTTTCCAACCTGGCCCTTGGTTTTGTTTCTTTTATTTGGATCCGTTCATGGACGCTCGGGATTCATCTTCGTCCTCCGCCCTGAATCGGGATGGGTCCTCGTCGGCCGTTGAGGATGACGGTGCTTTATCCATCACCGCCGCTCTTGCTAGGGAGGCTGCCTCGCTTTTTCAATCGGGGAAGTATGTTGGGTGTGTAGAGGTCTTGAACCAGCTGTTGCAGAAGAAAGAAGACGATCCTAAGGTTTGATTTTTCTTCCACCGTAATCTAATTTTGTTTCTTTGTTTACCTTTCTTTTCCCCTTTTTGTTGAGTTTTATAGCTTGATGTAGGAATGATTTAATCCATTCTACAATTTCGTTAATCCTTCGTGTGTATGTGTGCAGATGCGGGTTAGTTTTTTGAATTCAGTGATGCGAAATGTTGAGCTCAGAAATAATTTGGGGCGCTTTTTTCTTTTGTCCCATTTTTCCACTTTAGCGAATGTTGAGATTTGAATTATTTGAGGACAACATGCTAGAACTAAGTGCAATTTCGTTGAATAGTTTGACTACGCCTAGGTTATTCTAAGAGGAAATGCAAATGGGTGGTGATTTTCATTGAATGTCATCATTTTCCTTGGGATAAATTTTATCCTTTATGATTATCTACTGGAATTTAGGCTGGGGTGGTGGCATTTCTGTTCGTACATTATTTCATTTTTTCTTTATTACTGGTTAATTTGAACGTTAAACCTTCTAGTCACAGAATTGTTACCTAAACCTTTGATGTGAAAGCGACACCAATAGAATTCCCCTAGCAACTGATGGCCTGGAAAATATTTGGGGTTTCAGCCGCTTAACTAACAAGCATGGGCGATCAACTCCACTAAAGGCTCCATTTTCATTTACGGAAGATGGGTTTTACATAATACCACGTCTTTATCTTACTGTACTTGTTCCCACTGCCTGATTCAATACTTTCAATCCCAAGCTCTTCACTTTTGAAGTATGAAAAATCTAGAGTGGTGAAAAAAATTAATGTAATATTGACCCTGCCAAGTGCTAATGACAACGAGAAACTTGTTGTTTTTGTTAGTCTGTCCAGTCTCCATTCAGTATAACTGTGTTCAGATTTCACATTGTTGGCAAAAAAGTGTTGAGTGGCTTTGAATCTGGTTGGCATTAATTATATTCCCCATGTATGTGACTAACTCCTAATCTTTGCTCTAAAGCACATGTCAATTGGTAACTGATGATTGATATAGAAAACAAATATTGTCATGAAGTTAAATCAGCTTCATGAGCAGATAATATTATGTGGAAGTGTTACATGCACTCTCCAATTATACTGCTATCCTCGGCTCCATAGAAGTTTATGTAGCGATTCTATTTTACTTTTCTAGTAGAAGATCAAATCCCGATTATTAATTCTAGTAATAGCTCACTCTACAACCTTGGCCCTTTTCTTACTTATAAGTAATCAATGGTTGCATATTTAAAGAGTGGCCTCAGGTTCCAGAATGAATTATGATAAGTGTTATGGCAATTCTTTTATTATTGTTTTTGTTGGGCTGTGAGGAAGGTTAAGGAGATTCTACCTTACCTTTTTGTTAGTTATACTACCACATTAATTTTAGGGAACAATATCTTTGGTTTTCGATATTTAGTCAATTGGCACTATTACAACTATTTTGTTTTAATTTTTTAACTTGACATATTCGGATAGGGTGTCTTTTGATATACATTGACGTTGGATTCTCGATAAATTGTGATTTTCTATGTTGATTTTGACTTCGATCCAATCTTTAGGACTGCATCTTTTATAAGGAGCTTAGTGGTATTTTGGTGTCATTGTTTTTTTGTTACTAAACTAGTTAGTTGCAATGGGTTTGGCTTATGTGCTTTAATTTTGATGCTTCATTTGACACTTCCTTAAAGAAAGAAAATATATTGGGCAGCACATCATTTATAGGTGCCTTTCGCAGGTGCTTCATAATATTGCCATTGCCGAATACTTGAGGGATGGTTGTTCCAATCCAAAGAAGTTACTTGAAGTATTAAACAATGTGAAGGTATGCCATTAG

mRNA sequence

ATGGACGCTCGGGATTCATCTTCGTCCTCCGCCCTGAATCGGGATGGGTCCTCGTCGGCCGTTGAGGATGACGGTGCTTTATCCATCACCGCCGCTCTTGCTAGGGAGGCTGCCTCGCTTTTTCAATCGGGGAAGTATGTTGGGTGTGTAGAGGTCTTGAACCAGCTGTTGCAGAAGAAAGAAGACGATCCTAAGGTGCTTCATAATATTGCCATTGCCGAATACTTGAGGGATGGTTGTTCCAATCCAAAGAAGTTACTTGAAGTATTAAACAATGTGAAGGTATGCCATTAG

Coding sequence (CDS)

ATGGACGCTCGGGATTCATCTTCGTCCTCCGCCCTGAATCGGGATGGGTCCTCGTCGGCCGTTGAGGATGACGGTGCTTTATCCATCACCGCCGCTCTTGCTAGGGAGGCTGCCTCGCTTTTTCAATCGGGGAAGTATGTTGGGTGTGTAGAGGTCTTGAACCAGCTGTTGCAGAAGAAAGAAGACGATCCTAAGGTGCTTCATAATATTGCCATTGCCGAATACTTGAGGGATGGTTGTTCCAATCCAAAGAAGTTACTTGAAGTATTAAACAATGTGAAGGTATGCCATTAG
Homology
[Close]
BLAST of CSPI01G16700 vs. TrEMBL
Match: A0A0A0LWB8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G228980 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 2.1e-44
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 

Query: 1  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKK 60
          MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKK
Sbjct: 1  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKK 60

Query: 61 EDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVKVCH 98
          EDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVKVCH
Sbjct: 61 EDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVKVCH 97

[Close]
BLAST of CSPI01G16700 vs. TrEMBL
Match: A0A061GMW2_THECC (Tetratricopeptide repeat-like superfamily protein OS=Theobroma cacao GN=TCM_038150 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 7.4e-29
Identity = 71/94 (75.53%), Postives = 81/94 (86.17%), Query Frame = 1 

Query: 1  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKK 60
          MD+RDSSSSSA NRDG+  A +DDG LS+TAALA++AA  FQS K+  CV+VLNQL  KK
Sbjct: 1  MDSRDSSSSSAPNRDGA--AADDDGVLSVTAALAKDAALYFQSRKFAECVDVLNQLKPKK 60

Query: 61 EDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK 95
          EDDPKVLHNIAIAE+ RDGCS+PKKLLEVLNNVK
Sbjct: 61 EDDPKVLHNIAIAEFFRDGCSDPKKLLEVLNNVK 92

[Close]
BLAST of CSPI01G16700 vs. TrEMBL
Match: A5BUX0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020807 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 6.2e-28
Identity = 69/97 (71.13%), Postives = 82/97 (84.54%), Query Frame = 1 

Query: 1  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKK 60
          MD+RD+S SSA  RDG+S   +DD  LS+ A+LA++AA LFQS K+  C++VLNQLLQKK
Sbjct: 1  MDSRDTSLSSAATRDGASP--DDDAGLSVAASLAKDAALLFQSRKFSECLDVLNQLLQKK 60

Query: 61 EDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVKVCH 98
          EDDPKVLHNIAIAEY RDGCS+PKKLLEVLNNVKV +
Sbjct: 61 EDDPKVLHNIAIAEYFRDGCSDPKKLLEVLNNVKVIY 95

[Close]
BLAST of CSPI01G16700 vs. TrEMBL
Match: F6HHB1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g05820 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 3.1e-27
Identity = 68/94 (72.34%), Postives = 80/94 (85.11%), Query Frame = 1 

Query: 1  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKK 60
          MD+RD+S SSA  RDG+S   +DD  LS+ A+LA++AA LFQS K+  C++VLNQLLQKK
Sbjct: 1  MDSRDTSLSSAATRDGASP--DDDAGLSVAASLAKDAALLFQSRKFSECLDVLNQLLQKK 60

Query: 61 EDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK 95
          EDDPKVLHNIAIAEY RDGCS+PKKLLEVLNNVK
Sbjct: 61 EDDPKVLHNIAIAEYFRDGCSDPKKLLEVLNNVK 92

[Close]
BLAST of CSPI01G16700 vs. TrEMBL
Match: A0A0D2VJB1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G235300 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.0e-26
Identity = 66/94 (70.21%), Postives = 79/94 (84.04%), Query Frame = 1 

Query: 1  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKK 60
          MD+RDSSSSS  NRDG++   +DDG LS+TAALA++AA  FQS K+  CV+VL QL  KK
Sbjct: 1  MDSRDSSSSSVPNRDGTAG--DDDGVLSVTAALAKDAALYFQSRKFAECVDVLTQLKTKK 60

Query: 61 EDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK 95
          E DPKVLHNIAIAE+LRDGCS+PKK+LEVLNN+K
Sbjct: 61 EGDPKVLHNIAIAEFLRDGCSDPKKMLEVLNNIK 92

[Close]
BLAST of CSPI01G16700 vs. TAIR10
Match: AT5G35430.1 (AT5G35430.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 98.6 bits (244), Expect = 2.3e-21
Identity = 56/94 (59.57%), Postives = 71/94 (75.53%), Query Frame = 1 

Query: 1  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKK 60
          MD+RDS SS A+ RD SS + +D   LS+T+ LA+ A S FQSGK+  C++VL QL Q K
Sbjct: 1  MDSRDSLSSDAV-RDASSLS-DDAAVLSVTSTLAKTALSYFQSGKFEECIDVLIQLDQMK 60

Query: 61 EDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK 95
           +DPKVLHN+AIAEY +DGCSN +KL+EVL  VK
Sbjct: 61 HNDPKVLHNMAIAEYFKDGCSNSEKLVEVLKRVK 92

[Close]
BLAST of CSPI01G16700 vs. NCBI nr
Match: gi|700210026|gb|KGN65122.1| (hypothetical protein Csa_1G228980 [Cucumis sativus])

HSP 1 Score: 186.0 bits (471), Expect = 3.1e-44
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 

Query: 1  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKK 60
          MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKK
Sbjct: 1  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKK 60

Query: 61 EDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVKVCH 98
          EDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVKVCH
Sbjct: 61 EDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVKVCH 97

[Close]
BLAST of CSPI01G16700 vs. NCBI nr
Match: gi|449464972|ref|XP_004150203.1| (PREDICTED: CCR4-NOT transcription complex subunit 10 [Cucumis sativus])

HSP 1 Score: 177.6 bits (449), Expect = 1.1e-41
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 

Query: 1  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKK 60
          MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKK
Sbjct: 1  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKK 60

Query: 61 EDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK 95
          EDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK
Sbjct: 61 EDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK 94

[Close]
BLAST of CSPI01G16700 vs. NCBI nr
Match: gi|659086470|ref|XP_008443951.1| (PREDICTED: CCR4-NOT transcription complex subunit 10 [Cucumis melo])

HSP 1 Score: 169.9 bits (429), Expect = 2.3e-39
Identity = 90/94 (95.74%), Postives = 91/94 (96.81%), Query Frame = 1 

Query: 1  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKK 60
          MDARDSSSSSA NRD SSSAVEDDGALSITAALA+EAASLFQSGKY GCVEVLNQLLQKK
Sbjct: 1  MDARDSSSSSAPNRDASSSAVEDDGALSITAALAKEAASLFQSGKYAGCVEVLNQLLQKK 60

Query: 61 EDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK 95
          EDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK
Sbjct: 61 EDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK 94

[Close]
BLAST of CSPI01G16700 vs. NCBI nr
Match: gi|590578568|ref|XP_007013546.1| (Tetratricopeptide repeat-like superfamily protein [Theobroma cacao])

HSP 1 Score: 134.4 bits (337), Expect = 1.1e-28
Identity = 71/94 (75.53%), Postives = 81/94 (86.17%), Query Frame = 1 

Query: 1  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKK 60
          MD+RDSSSSSA NRDG+  A +DDG LS+TAALA++AA  FQS K+  CV+VLNQL  KK
Sbjct: 1  MDSRDSSSSSAPNRDGA--AADDDGVLSVTAALAKDAALYFQSRKFAECVDVLNQLKPKK 60

Query: 61 EDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVK 95
          EDDPKVLHNIAIAE+ RDGCS+PKKLLEVLNNVK
Sbjct: 61 EDDPKVLHNIAIAEFFRDGCSDPKKLLEVLNNVK 92

[Close]
BLAST of CSPI01G16700 vs. NCBI nr
Match: gi|147863828|emb|CAN83603.1| (hypothetical protein VITISV_020807 [Vitis vinifera])

HSP 1 Score: 131.3 bits (329), Expect = 9.0e-28
Identity = 69/97 (71.13%), Postives = 82/97 (84.54%), Query Frame = 1 

Query: 1  MDARDSSSSSALNRDGSSSAVEDDGALSITAALAREAASLFQSGKYVGCVEVLNQLLQKK 60
          MD+RD+S SSA  RDG+S   +DD  LS+ A+LA++AA LFQS K+  C++VLNQLLQKK
Sbjct: 1  MDSRDTSLSSAATRDGASP--DDDAGLSVAASLAKDAALLFQSRKFSECLDVLNQLLQKK 60

Query: 61 EDDPKVLHNIAIAEYLRDGCSNPKKLLEVLNNVKVCH 98
          EDDPKVLHNIAIAEY RDGCS+PKKLLEVLNNVKV +
Sbjct: 61 EDDPKVLHNIAIAEYFRDGCSDPKKLLEVLNNVKVIY 95

The following BLAST results are available for this feature:
BLAST of CSPI01G16700 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G16700 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LWB8_CUCSA2.1e-44100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G228980 PE=4 SV=1[more]
A0A061GMW2_THECC7.4e-2975.53Tetratricopeptide repeat-like superfamily protein OS=Theobroma cacao GN=TCM_0381... [more]
A5BUX0_VITVI6.2e-2871.13Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020807 PE=4 SV=1[more]
F6HHB1_VITVI3.1e-2772.34Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g05820 PE=4 SV=... [more]
A0A0D2VJB1_GOSRA2.0e-2670.21Uncharacterized protein OS=Gossypium raimondii GN=B456_013G235300 PE=4 SV=1[more]
BLAST of CSPI01G16700 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G35430.12.3e-2159.57 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of CSPI01G16700 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210026|gb|KGN65122.1|3.1e-44100.00hypothetical protein Csa_1G228980 [Cucumis sativus][more]
gi|449464972|ref|XP_004150203.1|1.1e-41100.00PREDICTED: CCR4-NOT transcription complex subunit 10 [Cucumis sativus][more]
gi|659086470|ref|XP_008443951.1|2.3e-3995.74PREDICTED: CCR4-NOT transcription complex subunit 10 [Cucumis melo][more]
gi|590578568|ref|XP_007013546.1|1.1e-2875.53Tetratricopeptide repeat-like superfamily protein [Theobroma cacao][more]
gi|147863828|emb|CAN83603.1|9.0e-2871.13hypothetical protein VITISV_020807 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006007 glucose catabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G16700.1CSPI01G16700.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domainGENE3DG3DSA:1.25.40.10coord: 32..75
score: 6.
NoneNo IPR availablePANTHERPTHR12979FAMILY NOT NAMEDcoord: 5..94
score: 1.9
NoneNo IPR availablePANTHERPTHR12979:SF5CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 10coord: 5..94
score: 1.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G16700Cla012209Watermelon (97103) v1cpiwmB102
CSPI01G16700Csa1G228980Cucumber (Chinese Long) v2cpicuB000
CSPI01G16700ClCG06G011510Watermelon (Charleston Gray)cpiwcgB086
CSPI01G16700CmoCh11G005220Cucurbita moschata (Rifu)cmocpiB081
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G16700Cucurbita pepo (Zucchini)cpecpiB660
CSPI01G16700Bottle gourd (USVL1VR-Ls)cpilsiB074
CSPI01G16700Melon (DHL92) v3.6.1cpimedB042
CSPI01G16700Cucumber (Gy14) v2cgybcpiB008
CSPI01G16700Silver-seed gourdcarcpiB0037
CSPI01G16700Silver-seed gourdcarcpiB0141
CSPI01G16700Cucumber (Chinese Long) v3cpicucB011
CSPI01G16700Watermelon (97103) v2cpiwmbB082
CSPI01G16700Wax gourdcpiwgoB085
CSPI01G16700Cucumber (Gy14) v1cgycpiB008
CSPI01G16700Cucurbita maxima (Rimu)cmacpiB053
CSPI01G16700Cucurbita maxima (Rimu)cmacpiB089
CSPI01G16700Cucurbita moschata (Rifu)cmocpiB044
CSPI01G16700Melon (DHL92) v3.5.1cpimeB048
CSPI01G16700Cucurbita pepo (Zucchini)cpecpiB365