Csa1G186620 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G186620
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	TNFR/CD27/30/40/95 cysteine-rich region
Location	Chr1 : 11281213 .. 11281661 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATTACTTCCACTTCCACACATGGCCATCAGATCATTACAAATCACGGAGGTGGTGATTCTGATGACCGCCGTCTGGTTGACGGTGGGTTGCCCAGCGGAGGGCAAGGTGTGCGCCGACTGCATCAGGAACAGGATGGAGCAGGACTGCCCGGCGTGTGCTCCGCCCCTGCGTTGCATGGCACAGTGCCTTTGGGGCGGGGATTCGAGGTCGAGGTGCGTTAATCGGTGCGATTCCGGCGGCGCGTGGGCGAGCTTGGCAAGCTGCAAGCAGTGCATAACCAAGTGCAAGTGCAGGTGCAGTTCTTCTTCTTTCATGAGCGTGCAATCGGTTAATTAAGAAGTTGGAGAGTGTGCTGTTTTGTAATCTTTCAAGTGGAGTACTTTGTAAAAGCAAATTTGAATCGTTTTATGCTGTCAGTTAAGAGCAAATTTGAATAGTTTGTGATG

mRNA sequence

ATGGCCATCAGATCATTACAAATCACGGAGGTGGTGATTCTGATGACCGCCGTCTGGTTGACGGTGGGTTGCCCAGCGGAGGGCAAGGTGTGCGCCGACTGCATCAGGAACAGGATGGAGCAGGACTGCCCGGCGTGTGCTCCGCCCCTGCGTTGCATGGCACAGTGCCTTTGGGGCGGGGATTCGAGGTCGAGGTGCGTTAATCGGTGCGATTCCGGCGGCGCGTGGGCGAGCTTGGCAAGCTGCAAGCAGTGCATAACCAAGTGCAAGTGCAGGTGCAGTTCTTCTTCTTTCATGAGCGTGCAATCGGTTAATTAA

Coding sequence (CDS)

ATGGCCATCAGATCATTACAAATCACGGAGGTGGTGATTCTGATGACCGCCGTCTGGTTGACGGTGGGTTGCCCAGCGGAGGGCAAGGTGTGCGCCGACTGCATCAGGAACAGGATGGAGCAGGACTGCCCGGCGTGTGCTCCGCCCCTGCGTTGCATGGCACAGTGCCTTTGGGGCGGGGATTCGAGGTCGAGGTGCGTTAATCGGTGCGATTCCGGCGGCGCGTGGGCGAGCTTGGCAAGCTGCAAGCAGTGCATAACCAAGTGCAAGTGCAGGTGCAGTTCTTCTTCTTTCATGAGCGTGCAATCGGTTAATTAA

Protein sequence

MAIRSLQITEVVILMTAVWLTVGCPAEGKVCADCIRNRMEQDCPACAPPLRCMAQCLWGGDSRSRCVNRCDSGGAWASLASCKQCITKCKCRCSSSSFMSVQSVN*

Homology

[Close]

BLAST of Csa1G186620 vs. TrEMBL
Match: A0A0A0LW71_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G186620 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 5.3e-57
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1


Query: 1   MAIRSLQITEVVILMTAVWLTVGCPAEGKVCADCIRNRMEQDCPACAPPLRCMAQCLWGG 60
           MAIRSLQITEVVILMTAVWLTVGCPAEGKVCADCIRNRMEQDCPACAPPLRCMAQCLWGG
Sbjct: 1   MAIRSLQITEVVILMTAVWLTVGCPAEGKVCADCIRNRMEQDCPACAPPLRCMAQCLWGG 60

Query: 61  DSRSRCVNRCDSGGAWASLASCKQCITKCKCRCSSSSFMSVQSVN 106
           DSRSRCVNRCDSGGAWASLASCKQCITKCKCRCSSSSFMSVQSVN
Sbjct: 61  DSRSRCVNRCDSGGAWASLASCKQCITKCKCRCSSSSFMSVQSVN 105

[Close]

BLAST of Csa1G186620 vs. TrEMBL
Match: M1C6G3_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400023652 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 4.7e-21
Identity = 41/75 (54.67%), Postives = 56/75 (74.67%), Query Frame = 1


Query: 21  TVGCPAEGKVCADCIRNRMEQDCPACAPPLRCMAQCLWGGDSRSRCVNRCDSGGAWASLA 80
           ++GCP +G  C +CI N ++ DCP CAP +RCMA+CLW G SRS+C+NRCD  G +  L+
Sbjct: 30  SLGCPTDGNGCRNCIVNHIKIDCPKCAPIMRCMAKCLWCGTSRSKCINRCDCKGTYPRLS 89

Query: 81  SCKQCITKCKCRCSS 96
            CK C+++CKC CSS
Sbjct: 90  DCKNCLSQCKCSCSS 104

[Close]

BLAST of Csa1G186620 vs. TrEMBL
Match: A0A166H086_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_002220 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 5.2e-20
Identity = 42/88 (47.73%), Postives = 60/88 (68.18%), Query Frame = 1


Query: 8  ITEVVILMTAVWLTVGCPAEGKVCADCIRNRMEQDCPACAPPLRCMAQCLWG-GDSRSRC 67
          +T +++ +      + CPA+G  C DCI NRM+ DCPACAP +RCMAQCLW  G S+ +C
Sbjct: 12 VTFLIMSLIISLPALACPADGSECKDCIANRMKSDCPACAPIMRCMAQCLWDKGMSQKQC 71

Query: 68 VNRCDSGGAWASLASCKQCITKCKCRCS 95
          V +CD  G +  ++ CK+C+ +CKC CS
Sbjct: 72 VKKCDCDGGYPRVSDCKKCLLQCKCSCS 99

[Close]

BLAST of Csa1G186620 vs. TrEMBL
Match: K4BPX8_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 6.8e-20
Identity = 39/85 (45.88%), Postives = 58/85 (68.24%), Query Frame = 1


Query: 11  VVILMTAVWLTVGCPAEGKVCADCIRNRMEQDCPACAPPLRCMAQCLWGGDSRSRCVNRC 70
           +++    +  + GCP +G  C +CI N ++ DCP CAP +RCMA+CLW G SRS+C+ +C
Sbjct: 20  IIVCDMIILPSFGCPTDGNGCRNCIVNHIKIDCPKCAPIMRCMAKCLWCGTSRSKCIKKC 79

Query: 71  DSGGAWASLASCKQCITKCKCRCSS 96
           D  G +  L+ CK C+++CKC CSS
Sbjct: 80  DCKGTYPRLSDCKNCLSQCKCSCSS 104

[Close]

BLAST of Csa1G186620 vs. TrEMBL
Match: A0A059C9P4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E03949 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.2e-19
Identity = 43/93 (46.24%), Postives = 58/93 (62.37%), Query Frame = 1


Query: 1  MAIRSLQITEVVILMTAVWLTVGCPAEGKVCADCIRNRMEQDCPACAPPLRCMAQCLWGG 60
          +A+  L +  V+  M      V CP++G VC DCI +R+   CP+C P LRCM +CLWGG
Sbjct: 7  LALVPLMMLVVLWSMAVPPPAVACPSDGGVCRDCIVDRLNHGCPSCRPVLRCMGRCLWGG 66

Query: 61 DSRSRCVNRCDSGGAWASLASCKQCITKCKCRC 94
           SR+ C  RCD  G    L+ CK+C++KCKC C
Sbjct: 67 SSRANCTRRCDCKGGNPKLSDCKKCMSKCKCSC 99

[Close]

BLAST of Csa1G186620 vs. TAIR10
Match: AT1G12064.1 (AT1G12064.1 unknown protein)

HSP 1 Score: 80.9 bits (198), Expect = 5.3e-16
Identity = 33/73 (45.21%), Postives = 45/73 (61.64%), Query Frame = 1


Query: 25  PAEGKVCADCIRNRMEQDCPACAPPLRCMAQCLWGGDSRSRCVN--RCDSGGAWASLASC 84
           P     C  C+  +M+ DCP C P LRCMA+CLWGG ++ +C    RCD+  A  SL  C
Sbjct: 38  PPSQNSCKTCMAEQMKYDCPKCVPVLRCMARCLWGGVTQRKCTTTCRCDT-AAKPSLLEC 97

Query: 85  KQCITKCKCRCSS 96
           K+C+++CKC C++
Sbjct: 98  KRCVSRCKCSCAA 109

[Close]

BLAST of Csa1G186620 vs. NCBI nr
Match: gi|700209961|gb|KGN65057.1| (hypothetical protein Csa_1G186620 [Cucumis sativus])

HSP 1 Score: 228.0 bits (580), Expect = 7.6e-57
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1


Query: 1   MAIRSLQITEVVILMTAVWLTVGCPAEGKVCADCIRNRMEQDCPACAPPLRCMAQCLWGG 60
           MAIRSLQITEVVILMTAVWLTVGCPAEGKVCADCIRNRMEQDCPACAPPLRCMAQCLWGG
Sbjct: 1   MAIRSLQITEVVILMTAVWLTVGCPAEGKVCADCIRNRMEQDCPACAPPLRCMAQCLWGG 60

Query: 61  DSRSRCVNRCDSGGAWASLASCKQCITKCKCRCSSSSFMSVQSVN 106
           DSRSRCVNRCDSGGAWASLASCKQCITKCKCRCSSSSFMSVQSVN
Sbjct: 61  DSRSRCVNRCDSGGAWASLASCKQCITKCKCRCSSSSFMSVQSVN 105

[Close]

BLAST of Csa1G186620 vs. NCBI nr
Match: gi|659118104|ref|XP_008458948.1| (PREDICTED: uncharacterized protein LOC103498207 [Cucumis melo])

HSP 1 Score: 189.5 bits (480), Expect = 3.0e-45
Identity = 85/103 (82.52%), Postives = 91/103 (88.35%), Query Frame = 1


Query: 1   MAIRSLQITEVVILMTAVWLTVGCPAEGKVCADCIRNRMEQDCPACAPPLRCMAQCLWGG 60
           MA RSL I   VILMTA+WL V CPA+GKVC+DCIRNRME+DCPACAPPLRCMAQCLWGG
Sbjct: 1   MANRSLLIAAAVILMTAIWLAVACPADGKVCSDCIRNRMERDCPACAPPLRCMAQCLWGG 60

Query: 61  DSRSRCVNRCDSGGAWASLASCKQCITKCKCRCSSSSFMSVQS 104
            SRSRCVNRCDSGGAWASLASCKQCI+KCKC+CSSSS  S  S
Sbjct: 61  GSRSRCVNRCDSGGAWASLASCKQCISKCKCKCSSSSSSSSSS 103

[Close]

BLAST of Csa1G186620 vs. NCBI nr
Match: gi|731439325|ref|XP_010646205.1| (PREDICTED: uncharacterized protein LOC104878123 [Vitis vinifera])

HSP 1 Score: 112.8 bits (281), Expect = 3.6e-22
Identity = 45/89 (50.56%), Postives = 62/89 (69.66%), Query Frame = 1


Query: 11  VVILMTAVWLTV----GCPAEGKVCADCIRNRMEQDCPACAPPLRCMAQCLWGGDSRSRC 70
           V++L+   WL +    GCP++G  C DCI N+M   CP+CAP LRCMA+CLWGG S+S+C
Sbjct: 13  VLMLLLVFWLMISPALGCPSDGSECKDCIVNQMRNGCPSCAPVLRCMARCLWGGTSKSKC 72

Query: 71  VNRCDSGGAWASLASCKQCITKCKCRCSS 96
           V RCD  G    L+ CK+C+++CKC C +
Sbjct: 73  VKRCDCYGGKPRLSDCKKCMSRCKCSCEA 101

[Close]

BLAST of Csa1G186620 vs. NCBI nr
Match: gi|1009107245|ref|XP_015878661.1| (PREDICTED: uncharacterized protein LOC107414952 [Ziziphus jujuba])

HSP 1 Score: 110.2 bits (274), Expect = 2.3e-21
Identity = 46/98 (46.94%), Postives = 63/98 (64.29%), Query Frame = 1


Query: 1  MAIRSLQITEVVILMTAVWLTV-----GCPAEGKVCADCIRNRMEQDCPACAPPLRCMAQ 60
          M  R   +  V +++  VWL +     GCP++G+ C  CI N+M+  CPACAP LRCMA+
Sbjct: 2  MEKRLCALRVVPMMLLVVWLMMISPAKGCPSDGRECKTCIVNQMKFGCPACAPILRCMAR 61

Query: 61 CLWGGDSRSRCVNRCDSGGAWASLASCKQCITKCKCRC 94
          CLW G SR  C+ RCD GG    L+ CK+C+++CKC C
Sbjct: 62 CLWSGSSRRNCIKRCDCGGGTPKLSDCKKCMSRCKCSC 99

[Close]

BLAST of Csa1G186620 vs. NCBI nr
Match: gi|747078148|ref|XP_011086230.1| (PREDICTED: uncharacterized protein LOC105168021 [Sesamum indicum])

HSP 1 Score: 110.2 bits (274), Expect = 2.3e-21
Identity = 43/89 (48.31%), Postives = 64/89 (71.91%), Query Frame = 1


Query: 11  VVILMTAVWLT--VGCPAEGKVCADCIRNRMEQDCPACAPPLRCMAQCLWGGDSRSRCVN 70
           ++ILM+A  L   +GCP++G  C +CI N+M+  CP C P ++CMA+CLWGG SRS C+ 
Sbjct: 18  LIILMSATSLPNCLGCPSDGSQCRNCIVNQMKTGCPGCVPIMQCMARCLWGGSSRSNCIK 77

Query: 71  RCDSGGAWASLASCKQCITKCKCRCSSSS 98
           +CD  G +  LA C++C+++CKC CS S+
Sbjct: 78  KCDCNGGYPRLADCRKCLSQCKCSCSVSA 106

The following BLAST results are available for this feature:

BLAST of Csa1G186620 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LW71_CUCSA	5.3e-57	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G186620 PE=4 SV=1	[more]
M1C6G3_SOLTU	4.7e-21	54.67	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400023652 PE=4 SV=1	[more]
A0A166H086_DAUCA	5.2e-20	47.73	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_002220 PE=4 SV=1	[more]
K4BPX8_SOLLC	6.8e-20	45.88	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
A0A059C9P4_EUCGR	1.2e-19	46.24	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E03949 PE=4 SV=1	[more]

BLAST of Csa1G186620 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G12064.1	5.3e-16	45.21	unknown protein	[more]

BLAST of Csa1G186620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209961\|gb\|KGN65057.1\|	7.6e-57	100.00	hypothetical protein Csa_1G186620 [Cucumis sativus]	[more]
gi\|659118104\|ref\|XP_008458948.1\|	3.0e-45	82.52	PREDICTED: uncharacterized protein LOC103498207 [Cucumis melo]	[more]
gi\|731439325\|ref\|XP_010646205.1\|	3.6e-22	50.56	PREDICTED: uncharacterized protein LOC104878123 [Vitis vinifera]	[more]
gi\|1009107245\|ref\|XP_015878661.1\|	2.3e-21	46.94	PREDICTED: uncharacterized protein LOC107414952 [Ziziphus jujuba]	[more]
gi\|747078148\|ref\|XP_011086230.1\|	2.3e-21	48.31	PREDICTED: uncharacterized protein LOC105168021 [Sesamum indicum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005488	binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU098386	cucumber EST collection version 3.0	transcribed_cluster
CU150257	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G186620.1	Csa1G186620.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU150257	CU150257	transcribed_cluster
CU098386	CU098386	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PROFILE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..24 score:

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G186620	CSPI01G15960	Wild cucumber (PI 183967)	cpicuB000
Csa1G186620	Cucsa.002310	Cucumber (Gy14) v1	cgycuB000
Csa1G186620	Cp4.1LG09g06590	Cucurbita pepo (Zucchini)	cpecuB020

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G186620	Silver-seed gourd	carcuB1051
Csa1G186620	Watermelon (97103) v2	cuwmbB005
Csa1G186620	Watermelon (97103) v2	cuwmbB009
Csa1G186620	Wax gourd	cuwgoB036
Csa1G186620	Wax gourd	cuwgoB058
Csa1G186620	Cucumber (Gy14) v1	cgycuB016
Csa1G186620	Cucurbita maxima (Rimu)	cmacuB210
Csa1G186620	Cucurbita moschata (Rifu)	cmocuB196
Csa1G186620	Watermelon (Charleston Gray)	cuwcgB019
Csa1G186620	Watermelon (Charleston Gray)	cuwcgB022
Csa1G186620	Watermelon (97103) v1	cuwmB048
Csa1G186620	Watermelon (97103) v1	cuwmB051
Csa1G186620	Cucurbita pepo (Zucchini)	cpecuB056
Csa1G186620	Cucurbita pepo (Zucchini)	cpecuB521
Csa1G186620	Bottle gourd (USVL1VR-Ls)	culsiB032
Csa1G186620	Bottle gourd (USVL1VR-Ls)	culsiB020
Csa1G186620	Bottle gourd (USVL1VR-Ls)	culsiB037
Csa1G186620	Cucumber (Gy14) v2	cgybcuB001
Csa1G186620	Cucumber (Gy14) v2	cgybcuB240