Csa1G181290 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G181290
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 10952075 .. 10952578 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAATTAAAGCAATAACCCCTTACGAATCTTACCAAGAAGGTCTAACCCTTGCTGTTTGGTGTCCTAAAACGTCCGAACTTGTAGAACTGAACCTTAAACGTTATAGGCACACTAGTTTGAAGCCAATCAGAGTGTGGATAACAGCCGCAAAAACCTTACGCCCAAGCCAAAAATGCTGCTGCAAGAAACCCAGACGTCGGAAACGTGATGCACAACTTGTTGTTCTCGTTGGAGTCTCAAACGGAGAAAAAACAATGCTTCGAAAGCCTAGGCGAAGTGGTTCGGAGTCGTGCTCACAATGCAAGTCAGGTTGCCGATTGAACGTAGAGCGTCGTCGACTACAGAGCTGGGCGTTTGCGTGGGTGTGGGCTCCAGTCGTCGCTTGCCTTACGCCTGTAGTGCCGGAGTGTCGCCGGAGAAGTAGACTGAGGTACGGGGTTCGGGCGCTGTTTGATGAGAGGGGTGGAAGATGGACGTTTCCTTTTTTTCCCAAATCTTAA

mRNA sequence

ATGGAAATTAAAGCAATAACCCCTTACGAATCTTACCAAGAAGGTCTAACCCTTGCTGTTTGGTGTCCTAAAACGTCCGAACTTGTAGAACTGAACCTTAAACGTTATAGGCACACTAGTTTGAAGCCAATCAGAGTGTGGATAACAGCCGCAAAAACCTTACGCCCAAGCCAAAAATGCTGCTGCAAGAAACCCAGACGTCGGAAACGTGATGCACAACTTGTTGTTCTCGTTGGAGTCTCAAACGGAGAAAAAACAATGCTTCGAAAGCCTAGGCGAAGTGGTTCGGAGTCGTGCTCACAATGCAAGTCAGGTTGCCGATTGAACGTAGAGCGTCGTCGACTACAGAGCTGGGCGTTTGCGTGGGTGTGGGCTCCAGTCGTCGCTTGCCTTACGCCTGTAGTGCCGGAGTGTCGCCGGAGAAGTAGACTGAGGTACGGGGTTCGGGCGCTGTTTGATGAGAGGGGTGGAAGATGGACGTTTCCTTTTTTTCCCAAATCTTAA

Coding sequence (CDS)

ATGGAAATTAAAGCAATAACCCCTTACGAATCTTACCAAGAAGGTCTAACCCTTGCTGTTTGGTGTCCTAAAACGTCCGAACTTGTAGAACTGAACCTTAAACGTTATAGGCACACTAGTTTGAAGCCAATCAGAGTGTGGATAACAGCCGCAAAAACCTTACGCCCAAGCCAAAAATGCTGCTGCAAGAAACCCAGACGTCGGAAACGTGATGCACAACTTGTTGTTCTCGTTGGAGTCTCAAACGGAGAAAAAACAATGCTTCGAAAGCCTAGGCGAAGTGGTTCGGAGTCGTGCTCACAATGCAAGTCAGGTTGCCGATTGAACGTAGAGCGTCGTCGACTACAGAGCTGGGCGTTTGCGTGGGTGTGGGCTCCAGTCGTCGCTTGCCTTACGCCTGTAGTGCCGGAGTGTCGCCGGAGAAGTAGACTGAGGTACGGGGTTCGGGCGCTGTTTGATGAGAGGGGTGGAAGATGGACGTTTCCTTTTTTTCCCAAATCTTAA

Protein sequence

MEIKAITPYESYQEGLTLAVWCPKTSELVELNLKRYRHTSLKPIRVWITAAKTLRPSQKCCCKKPRRRKRDAQLVVLVGVSNGEKTMLRKPRRSGSESCSQCKSGCRLNVERRRLQSWAFAWVWAPVVACLTPVVPECRRRSRLRYGVRALFDERGGRWTFPFFPKS*
Homology
[Close]
BLAST of Csa1G181290 vs. TrEMBL
Match: A0A0A0LT13_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181290 PE=4 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 3.9e-94
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 1 

Query: 1   MEIKAITPYESYQEGLTLAVWCPKTSELVELNLKRYRHTSLKPIRVWITAAKTLRPSQKC 60
           MEIKAITPYESYQEGLTLAVWCPKTSELVELNLKRYRHTSLKPIRVWITAAKTLRPSQKC
Sbjct: 1   MEIKAITPYESYQEGLTLAVWCPKTSELVELNLKRYRHTSLKPIRVWITAAKTLRPSQKC 60

Query: 61  CCKKPRRRKRDAQLVVLVGVSNGEKTMLRKPRRSGSESCSQCKSGCRLNVERRRLQSWAF 120
           CCKKPRRRKRDAQLVVLVGVSNGEKTMLRKPRRSGSESCSQCKSGCRLNVERRRLQSWAF
Sbjct: 61  CCKKPRRRKRDAQLVVLVGVSNGEKTMLRKPRRSGSESCSQCKSGCRLNVERRRLQSWAF 120

Query: 121 AWVWAPVVACLTPVVPECRRRSRLRYGVRALFDERGGRWTFPFFPKS 168
           AWVWAPVVACLTPVVPECRRRSRLRYGVRALFDERGGRWTFPFFPKS
Sbjct: 121 AWVWAPVVACLTPVVPECRRRSRLRYGVRALFDERGGRWTFPFFPKS 167

[Close]
BLAST of Csa1G181290 vs. NCBI nr
Match: gi|700209919|gb|KGN65015.1| (hypothetical protein Csa_1G181290 [Cucumis sativus])

HSP 1 Score: 352.1 bits (902), Expect = 5.5e-94
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 1 

Query: 1   MEIKAITPYESYQEGLTLAVWCPKTSELVELNLKRYRHTSLKPIRVWITAAKTLRPSQKC 60
           MEIKAITPYESYQEGLTLAVWCPKTSELVELNLKRYRHTSLKPIRVWITAAKTLRPSQKC
Sbjct: 1   MEIKAITPYESYQEGLTLAVWCPKTSELVELNLKRYRHTSLKPIRVWITAAKTLRPSQKC 60

Query: 61  CCKKPRRRKRDAQLVVLVGVSNGEKTMLRKPRRSGSESCSQCKSGCRLNVERRRLQSWAF 120
           CCKKPRRRKRDAQLVVLVGVSNGEKTMLRKPRRSGSESCSQCKSGCRLNVERRRLQSWAF
Sbjct: 61  CCKKPRRRKRDAQLVVLVGVSNGEKTMLRKPRRSGSESCSQCKSGCRLNVERRRLQSWAF 120

Query: 121 AWVWAPVVACLTPVVPECRRRSRLRYGVRALFDERGGRWTFPFFPKS 168
           AWVWAPVVACLTPVVPECRRRSRLRYGVRALFDERGGRWTFPFFPKS
Sbjct: 121 AWVWAPVVACLTPVVPECRRRSRLRYGVRALFDERGGRWTFPFFPKS 167

The following BLAST results are available for this feature:
BLAST of Csa1G181290 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LT13_CUCSA3.9e-94100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181290 PE=4 SV=1[more]
BLAST of Csa1G181290 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209919|gb|KGN65015.1|5.5e-94100.00hypothetical protein Csa_1G181290 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU142296cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G181290.1Csa1G181290.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU142296CU142296transcribed_cluster