Csa1G171060 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G171060
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 10642110 .. 10642488 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGGTTTAGAAGGGCAAGACCGTGAGATAAGGGCGAGACTTGCTAAACAAATAGCAACGAGGCTAGGAGGAGAGCAACACCAAGCACACATAGTTTTTGCACGAGAGGTACACCAGTTTGAGCGAGAGCTGTATTTTGAGAATTTTACACGAATTTTTAACGGTCAGCAAAGATCCATCGACTTTTTTTTATCTTTGGCATATTTTTTTCCCGATTTTGGGTATTCATCCGACTTCCTCAAAAAGAAAAAAAAGCATCTAACCTCCATCATCTTCCCTCCCTTACAGCCGCCGGACCAACTTCCCCCAGCGTTGCAGACCTCATCAAGCTTTGATGAACCAACTTTGCAGCGGTGGAGACTATAGACTCCGATGA

mRNA sequence

ATGAGTGGTTTAGAAGGGCAAGACCGTGAGATAAGGGCGAGACTTGCTAAACAAATAGCAACGAGGCTAGGAGGAGAGCAACACCAAGCACACATAGTTTTTGCACGAGAGGTACACCAGTTTGAGCGAGAGCTGTATTTTGAGAATTTTACACGAATTTTTAACGGTCAGCAAAGATCCATCGACTTTTTTTTATCTTTGGCATATTTTTTTCCCGATTTTGGCCGCCGGACCAACTTCCCCCAGCGTTGCAGACCTCATCAAGCTTTGATGAACCAACTTTGCAGCGGTGGAGACTATAGACTCCGATGA

Coding sequence (CDS)

ATGAGTGGTTTAGAAGGGCAAGACCGTGAGATAAGGGCGAGACTTGCTAAACAAATAGCAACGAGGCTAGGAGGAGAGCAACACCAAGCACACATAGTTTTTGCACGAGAGGTACACCAGTTTGAGCGAGAGCTGTATTTTGAGAATTTTACACGAATTTTTAACGGTCAGCAAAGATCCATCGACTTTTTTTTATCTTTGGCATATTTTTTTCCCGATTTTGGCCGCCGGACCAACTTCCCCCAGCGTTGCAGACCTCATCAAGCTTTGATGAACCAACTTTGCAGCGGTGGAGACTATAGACTCCGATGA

Protein sequence

MSGLEGQDREIRARLAKQIATRLGGEQHQAHIVFAREVHQFERELYFENFTRIFNGQQRSIDFFLSLAYFFPDFGRRTNFPQRCRPHQALMNQLCSGGDYRLR*
Homology
[Close]
BLAST of Csa1G171060 vs. TrEMBL
Match: A0A0A0LVL4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G171060 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 3.5e-53
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MSGLEGQDREIRARLAKQIATRLGGEQHQAHIVFAREVHQFERELYFENFTRIFNGQQRS 60
           MSGLEGQDREIRARLAKQIATRLGGEQHQAHIVFAREVHQFERELYFENFTRIFNGQQRS
Sbjct: 1   MSGLEGQDREIRARLAKQIATRLGGEQHQAHIVFAREVHQFERELYFENFTRIFNGQQRS 60

Query: 61  IDFFLSLAYFFPDFGRRTNFPQRCRPHQALMNQLCSGGDYRLR 104
           IDFFLSLAYFFPDFGRRTNFPQRCRPHQALMNQLCSGGDYRLR
Sbjct: 61  IDFFLSLAYFFPDFGRRTNFPQRCRPHQALMNQLCSGGDYRLR 103

[Close]
BLAST of Csa1G171060 vs. NCBI nr
Match: gi|700209888|gb|KGN64984.1| (hypothetical protein Csa_1G171060 [Cucumis sativus])

HSP 1 Score: 215.3 bits (547), Expect = 5.0e-53
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MSGLEGQDREIRARLAKQIATRLGGEQHQAHIVFAREVHQFERELYFENFTRIFNGQQRS 60
           MSGLEGQDREIRARLAKQIATRLGGEQHQAHIVFAREVHQFERELYFENFTRIFNGQQRS
Sbjct: 1   MSGLEGQDREIRARLAKQIATRLGGEQHQAHIVFAREVHQFERELYFENFTRIFNGQQRS 60

Query: 61  IDFFLSLAYFFPDFGRRTNFPQRCRPHQALMNQLCSGGDYRLR 104
           IDFFLSLAYFFPDFGRRTNFPQRCRPHQALMNQLCSGGDYRLR
Sbjct: 61  IDFFLSLAYFFPDFGRRTNFPQRCRPHQALMNQLCSGGDYRLR 103

The following BLAST results are available for this feature:
BLAST of Csa1G171060 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVL4_CUCSA3.5e-53100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G171060 PE=4 SV=1[more]
BLAST of Csa1G171060 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209888|gb|KGN64984.1|5.0e-53100.00hypothetical protein Csa_1G171060 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0008270 zinc ion binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU129802cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G171060.1Csa1G171060.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU129802CU129802transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G171060CsGy1G015020Cucumber (Gy14) v2cgybcuB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G171060Watermelon (97103) v2cuwmbB009
Csa1G171060Wax gourdcuwgoB036
Csa1G171060Cucumber (Gy14) v1cgycuB457
Csa1G171060Cucurbita maxima (Rimu)cmacuB210
Csa1G171060Cucurbita maxima (Rimu)cmacuB222
Csa1G171060Cucurbita maxima (Rimu)cmacuB399
Csa1G171060Cucurbita moschata (Rifu)cmocuB206
Csa1G171060Cucurbita moschata (Rifu)cmocuB392
Csa1G171060Melon (DHL92) v3.5.1cumeB000
Csa1G171060Melon (DHL92) v3.5.1cumeB004
Csa1G171060Melon (DHL92) v3.5.1cumeB015
Csa1G171060Watermelon (Charleston Gray)cuwcgB022
Csa1G171060Watermelon (97103) v1cuwmB042
Csa1G171060Cucurbita pepo (Zucchini)cpecuB020
Csa1G171060Cucurbita pepo (Zucchini)cpecuB056
Csa1G171060Cucurbita pepo (Zucchini)cpecuB512
Csa1G171060Bottle gourd (USVL1VR-Ls)culsiB032
Csa1G171060Bottle gourd (USVL1VR-Ls)culsiB037
Csa1G171060Melon (DHL92) v3.6.1cumedB010
Csa1G171060Melon (DHL92) v3.6.1cumedB016