Csa1G169970 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G169970
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 10556711 .. 10557046 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCGTCCACGAATTAGACAGGTTGATTAAGATTGAGAAAGGGTTGCTCTCGTTCAACGGTTCTCTACCTGACTTCCTATATGCTCCCATTAAAGCATTGAAGTGGGAAAAATTCTTCACGGACGAGACAAAGGTCAAGTTCGATGTAGTAGATCTATTTTATGCGACAAAGTTTCATCCAAAGGAATCATACGCGATAGTGGATGACGAGAGAGTTCCTTTCACTAAAGAAAAGAGCTCAATGAGTTGTATGGTTTACCTAATGATCTGGACACATACCCTGGCCATAGGCTCATCGCCTAACCCACAGAAAAAGATGCAAGTAGAACTATAA

mRNA sequence

ATGAGCGTCCACGAATTAGACAGGTTGATTAAGATTGAGAAAGGGTTGCTCTCGTTCAACGGTTCTCTACCTGACTTCCTATATGCTCCCATTAAAGCATTGAAGTGGGAAAAATTCTTCACGGACGAGACAAAGGTCAAGTTCGATGTAGTAGATCTATTTTATGCGACAAAGTTTCATCCAAAGGAATCATACGCGATAGTGGATGACGAGAGAGTTCCTTTCACTAAAGAAAAGAGCTCAATGAGTTGTATGGTTTACCTAATGATCTGGACACATACCCTGGCCATAGGCTCATCGCCTAACCCACAGAAAAAGATGCAAGTAGAACTATAA

Coding sequence (CDS)

ATGAGCGTCCACGAATTAGACAGGTTGATTAAGATTGAGAAAGGGTTGCTCTCGTTCAACGGTTCTCTACCTGACTTCCTATATGCTCCCATTAAAGCATTGAAGTGGGAAAAATTCTTCACGGACGAGACAAAGGTCAAGTTCGATGTAGTAGATCTATTTTATGCGACAAAGTTTCATCCAAAGGAATCATACGCGATAGTGGATGACGAGAGAGTTCCTTTCACTAAAGAAAAGAGCTCAATGAGTTGTATGGTTTACCTAATGATCTGGACACATACCCTGGCCATAGGCTCATCGCCTAACCCACAGAAAAAGATGCAAGTAGAACTATAA

Protein sequence

MSVHELDRLIKIEKGLLSFNGSLPDFLYAPIKALKWEKFFTDETKVKFDVVDLFYATKFHPKESYAIVDDERVPFTKEKSSMSCMVYLMIWTHTLAIGSSPNPQKKMQVEL*

Homology

[Close]

BLAST of Csa1G169970 vs. TrEMBL
Match: A0A0A0LT82_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G169970 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 4.3e-57
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1


Query: 1   MSVHELDRLIKIEKGLLSFNGSLPDFLYAPIKALKWEKFFTDETKVKFDVVDLFYATKFH 60
           MSVHELDRLIKIEKGLLSFNGSLPDFLYAPIKALKWEKFFTDETKVKFDVVDLFYATKFH
Sbjct: 1   MSVHELDRLIKIEKGLLSFNGSLPDFLYAPIKALKWEKFFTDETKVKFDVVDLFYATKFH 60

Query: 61  PKESYAIVDDERVPFTKEKSSMSCMVYLMIWTHTLAIGSSPNPQKKMQVEL 112
           PKESYAIVDDERVPFTKEKSSMSCMVYLMIWTHTLAIGSSPNPQKKMQVEL
Sbjct: 61  PKESYAIVDDERVPFTKEKSSMSCMVYLMIWTHTLAIGSSPNPQKKMQVEL 111

[Close]

BLAST of Csa1G169970 vs. TrEMBL
Match: A0A0A0L9V9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G283010 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 6.1e-11
Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = 1


Query: 13  EKGLLSFNGSLPDFLYAPIKALKWEKFFTDETKVKFDVVDLFYATKFHP 62
           +KGLLSFNG LPDFL+  IKALKWEK    E +VK D+V++FYA KFHP
Sbjct: 128 KKGLLSFNGLLPDFLHRSIKALKWEKLLLSEARVKLDLVEMFYAVKFHP 176

[Close]

BLAST of Csa1G169970 vs. TrEMBL
Match: A0A0A0KXQ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G091900 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.1e-07
Identity = 38/78 (48.72%), Postives = 44/78 (56.41%), Query Frame = 1


Query: 5   ELDRLIKIEKGLLSFNGSLPDFLYAPIKALKWEKFFTDETKVKFDVVDLFYATKFHPKES 64
           ELD+LIKIEKGLL F G LPDFL  PIKA KW+KFF  E +     V         P  S
Sbjct: 36  ELDKLIKIEKGLLPFKGPLPDFLPDPIKAFKWKKFFIVEGEKVPSTVKAISKLYDLPNGS 95

Query: 65  YAIVDDERVPFTKEKSSM 83
           YA   D+R+     +S M
Sbjct: 96  YA-YPDQRIIDNPMRSDM 112

[Close]

BLAST of Csa1G169970 vs. NCBI nr
Match: gi|700209877|gb|KGN64973.1| (hypothetical protein Csa_1G169970 [Cucumis sativus])

HSP 1 Score: 228.4 bits (581), Expect = 6.2e-57
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1


Query: 1   MSVHELDRLIKIEKGLLSFNGSLPDFLYAPIKALKWEKFFTDETKVKFDVVDLFYATKFH 60
           MSVHELDRLIKIEKGLLSFNGSLPDFLYAPIKALKWEKFFTDETKVKFDVVDLFYATKFH
Sbjct: 1   MSVHELDRLIKIEKGLLSFNGSLPDFLYAPIKALKWEKFFTDETKVKFDVVDLFYATKFH 60

Query: 61  PKESYAIVDDERVPFTKEKSSMSCMVYLMIWTHTLAIGSSPNPQKKMQVEL 112
           PKESYAIVDDERVPFTKEKSSMSCMVYLMIWTHTLAIGSSPNPQKKMQVEL
Sbjct: 61  PKESYAIVDDERVPFTKEKSSMSCMVYLMIWTHTLAIGSSPNPQKKMQVEL 111

[Close]

BLAST of Csa1G169970 vs. NCBI nr
Match: gi|700202631|gb|KGN57764.1| (hypothetical protein Csa_3G283010 [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 8.7e-11
Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = 1


Query: 13  EKGLLSFNGSLPDFLYAPIKALKWEKFFTDETKVKFDVVDLFYATKFHP 62
           +KGLLSFNG LPDFL+  IKALKWEK    E +VK D+V++FYA KFHP
Sbjct: 128 KKGLLSFNGLLPDFLHRSIKALKWEKLLLSEARVKLDLVEMFYAVKFHP 176

[Close]

BLAST of Csa1G169970 vs. NCBI nr
Match: gi|700198466|gb|KGN53624.1| (hypothetical protein Csa_4G091900 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 5.8e-07
Identity = 38/78 (48.72%), Postives = 44/78 (56.41%), Query Frame = 1


Query: 5   ELDRLIKIEKGLLSFNGSLPDFLYAPIKALKWEKFFTDETKVKFDVVDLFYATKFHPKES 64
           ELD+LIKIEKGLL F G LPDFL  PIKA KW+KFF  E +     V         P  S
Sbjct: 36  ELDKLIKIEKGLLPFKGPLPDFLPDPIKAFKWKKFFIVEGEKVPSTVKAISKLYDLPNGS 95

Query: 65  YAIVDDERVPFTKEKSSM 83
           YA   D+R+     +S M
Sbjct: 96  YA-YPDQRIIDNPMRSDM 112

The following BLAST results are available for this feature:

BLAST of Csa1G169970 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT82_CUCSA	4.3e-57	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G169970 PE=4 SV=1	[more]
A0A0A0L9V9_CUCSA	6.1e-11	67.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G283010 PE=4 SV=1	[more]
A0A0A0KXQ2_CUCSA	4.1e-07	48.72	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G091900 PE=4 SV=1	[more]

BLAST of Csa1G169970 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209877\|gb\|KGN64973.1\|	6.2e-57	100.00	hypothetical protein Csa_1G169970 [Cucumis sativus]	[more]
gi\|700202631\|gb\|KGN57764.1\|	8.7e-11	67.35	hypothetical protein Csa_3G283010 [Cucumis sativus]	[more]
gi\|700198466\|gb\|KGN53624.1\|	5.8e-07	48.72	hypothetical protein Csa_4G091900 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G169970.1	Csa1G169970.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G169970	CSPI01G15150	Wild cucumber (PI 183967)	cpicuB000

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G169970	Cucumber (Gy14) v2	cgybcuB001
Csa1G169970	Melon (DHL92) v3.6.1	cumedB010
Csa1G169970	Watermelon (97103) v2	cuwmbB009
Csa1G169970	Cucumber (Gy14) v1	cgycuB457
Csa1G169970	Cucurbita maxima (Rimu)	cmacuB222
Csa1G169970	Cucurbita maxima (Rimu)	cmacuB399
Csa1G169970	Cucurbita moschata (Rifu)	cmocuB206
Csa1G169970	Cucurbita moschata (Rifu)	cmocuB392
Csa1G169970	Melon (DHL92) v3.5.1	cumeB015
Csa1G169970	Watermelon (Charleston Gray)	cuwcgB022
Csa1G169970	Watermelon (97103) v1	cuwmB042
Csa1G169970	Cucurbita pepo (Zucchini)	cpecuB020
Csa1G169970	Bottle gourd (USVL1VR-Ls)	culsiB032