Csa1G163120 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G163120
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 10210883 .. 10211593 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATACTCTTCCGAGACGGATGCATCTTACTGAAAGGAAGCAACTTCCACAACCCCAAGCAAACTCCTCTCTTCTTAGTCAAGCAGCATCTGGCGCGTCCAACGCCCTACCTACTCTTTCCCAACCTGAAACTGCACTCATTCGTAGAAAGGAAGTCGTCGCGCGAGTCACTATGGTTGTCCGGTTTAGAGTCCTTCAGACGTCCTCAGTCCTTTCCATTAGTAGTTAGGAGCTTTTCATATTGCGGAAAAGAATATTGAAGCAAGGCGCAAAGAATATTGCAACCTATCCCCCTTTCCACGGAGTGGGCTGACTTTGCACCTCATCCTCTCCTCCATCTCAGTCGAGCTTCTCTTTCGGGATGCGAGAGGTTAGAAGAAGGAAGGCGCTAGTATATAAGCAAGCCACCACCAACCTATTCCCCTTCGTCGCTTAGGCCTGCAGATGAAAGCTGACTTCACGCTTTCCCCCAGCCCCTCCGGGGAGGAGAGGCAATCTGGGAAATCCGGGTTAGCTGGCCCCTCTTGATCTGTGTCTTACCTTGAGTCCCTAGCTTCCGAGACAGATGATTCTTATTCCATGGAAGAAGGAAAGACCTATTCCCCTTCGTCGCTTAGGCCTGCAGATGAAAGCTGACTTCACGCTTTCCCCCAGCCCCTCCGGGGAGGAGAGGCAATCTGGGAAATCCGGGTTAGCTGGCCCCTCTTGA

mRNA sequence

ATGAATACTCTTCCGAGACGGATGCATCTTACTGAAAGGAAGCAACTTCCACAACCCCAAGCAAACTCCTCTCTTCTTAGTCAAGCAGCATCTGGCGCGTCCAACGCCCTACCTACTCTTTCCCAACCTGAAACTGCACTCATTCGTAGAAAGGAAGTCGTCGCGCGAGTCACTATGGTTGTCCGGTTTAGAGTCCTTCAGACGTCCTCAGTCCTTTCCATTAGCCTGCAGATGAAAGCTGACTTCACGCTTTCCCCCAGCCCCTCCGGGGAGGAGAGGCAATCTGGGAAATCCGGACAGATGATTCTTATTCCATGGAAGAAGGAAAGACCTATTCCCCTTCGTCGCTTAGGCCTGCAGATGAAAGCTGACTTCACGCTTTCCCCCAGCCCCTCCGGGGAGGAGAGGCAATCTGGGAAATCCGGGTTAGCTGGCCCCTCTTGA

Coding sequence (CDS)

ATGAATACTCTTCCGAGACGGATGCATCTTACTGAAAGGAAGCAACTTCCACAACCCCAAGCAAACTCCTCTCTTCTTAGTCAAGCAGCATCTGGCGCGTCCAACGCCCTACCTACTCTTTCCCAACCTGAAACTGCACTCATTCGTAGAAAGGAAGTCGTCGCGCGAGTCACTATGGTTGTCCGGTTTAGAGTCCTTCAGACGTCCTCAGTCCTTTCCATTAGCCTGCAGATGAAAGCTGACTTCACGCTTTCCCCCAGCCCCTCCGGGGAGGAGAGGCAATCTGGGAAATCCGGACAGATGATTCTTATTCCATGGAAGAAGGAAAGACCTATTCCCCTTCGTCGCTTAGGCCTGCAGATGAAAGCTGACTTCACGCTTTCCCCCAGCCCCTCCGGGGAGGAGAGGCAATCTGGGAAATCCGGGTTAGCTGGCCCCTCTTGA

Protein sequence

MNTLPRRMHLTERKQLPQPQANSSLLSQAASGASNALPTLSQPETALIRRKEVVARVTMVVRFRVLQTSSVLSISLQMKADFTLSPSPSGEERQSGKSGQMILIPWKKERPIPLRRLGLQMKADFTLSPSPSGEERQSGKSGLAGPS*
Homology
[Close]
BLAST of Csa1G163120 vs. TrEMBL
Match: A0A0A0LVS0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G163120 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 8.7e-74
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1 

Query: 1   MNTLPRRMHLTERKQLPQPQANSSLLSQAASGASNALPTLSQPETALIRRKEVVARVTMV 60
           MNTLPRRMHLTERKQLPQPQANSSLLSQAASGASNALPTLSQPETALIRRKEVVARVTMV
Sbjct: 1   MNTLPRRMHLTERKQLPQPQANSSLLSQAASGASNALPTLSQPETALIRRKEVVARVTMV 60

Query: 61  VRFRVLQTSSVLSISLQMKADFTLSPSPSGEERQSGKSGQMILIPWKKERPIPLRRLGLQ 120
           VRFRVLQTSSVLSISLQMKADFTLSPSPSGEERQSGKSGQMILIPWKKERPIPLRRLGLQ
Sbjct: 61  VRFRVLQTSSVLSISLQMKADFTLSPSPSGEERQSGKSGQMILIPWKKERPIPLRRLGLQ 120

Query: 121 MKADFTLSPSPSGEERQSGKSGLAGPS 148
           MKADFTLSPSPSGEERQSGKSGLAGPS
Sbjct: 121 MKADFTLSPSPSGEERQSGKSGLAGPS 147

[Close]
BLAST of Csa1G163120 vs. NCBI nr
Match: gi|700209831|gb|KGN64927.1| (hypothetical protein Csa_1G163120 [Cucumis sativus])

HSP 1 Score: 284.3 bits (726), Expect = 1.2e-73
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1 

Query: 1   MNTLPRRMHLTERKQLPQPQANSSLLSQAASGASNALPTLSQPETALIRRKEVVARVTMV 60
           MNTLPRRMHLTERKQLPQPQANSSLLSQAASGASNALPTLSQPETALIRRKEVVARVTMV
Sbjct: 1   MNTLPRRMHLTERKQLPQPQANSSLLSQAASGASNALPTLSQPETALIRRKEVVARVTMV 60

Query: 61  VRFRVLQTSSVLSISLQMKADFTLSPSPSGEERQSGKSGQMILIPWKKERPIPLRRLGLQ 120
           VRFRVLQTSSVLSISLQMKADFTLSPSPSGEERQSGKSGQMILIPWKKERPIPLRRLGLQ
Sbjct: 61  VRFRVLQTSSVLSISLQMKADFTLSPSPSGEERQSGKSGQMILIPWKKERPIPLRRLGLQ 120

Query: 121 MKADFTLSPSPSGEERQSGKSGLAGPS 148
           MKADFTLSPSPSGEERQSGKSGLAGPS
Sbjct: 121 MKADFTLSPSPSGEERQSGKSGLAGPS 147

The following BLAST results are available for this feature:
BLAST of Csa1G163120 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVS0_CUCSA8.7e-74100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G163120 PE=4 SV=1[more]
BLAST of Csa1G163120 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209831|gb|KGN64927.1|1.2e-73100.00hypothetical protein Csa_1G163120 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU142594cucumber EST collection version 3.0transcribed_cluster
CU160681cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G163120.1Csa1G163120.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU160681CU160681transcribed_cluster
CU142594CU142594transcribed_cluster