CSPI01G14670 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G14670
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr1 : 10379383 .. 10380124 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAGACCTAGAAAATAAAGGATCCTACCCAGAGGTGAAGCTAAAAGTTCAACAAAATTTAGTCTTTGTAATCACAAAGGTCACAATGGTCCAGGTGACCGGTCGGAAGAGCTCTTTCGTATGGTCAGCTCAACTATCCCCACGGGTAGAACGAGGGGTTGATTCCATTTATCTTATCATCTTTGTTTGGATTTCTTCTCCTGGGAGTCCAAGGTCGAGGGCCAGATCACATCTTTCAGCTTACTGAAAGGAAGCAACTTCCACAACCCCAAGCAAACTCCTCTCTTCTTAGTCAAGCAGCATCTGGCGCGTCCAACGCCCTACCTACTCTTTCCCAACCTGAAACTGCACTCATTCGTAGAAAGGGAGTCGTCGCGCGAGTCACTATGGTTGTCCGGTTTAGAGTCCTTCAGACGTCCTCAGTCCTTTCCATTAGTAGTTAGGAGCTTTTCATATTGCGGAAAAGAATATTGAAGCAAGGCGCAAAGAATATTGCAACCTATCCCCCTTTCCACGGAGTGGGCTGACTTTGCACCTCGTCCTCTCCTCCATCTCAGTCGAGCTTCTCTTTCGGGATGCGAGAGGTTAGAAGAAGGAAGGCACTAGTATATAAGCAAGCCACCACCAACCTATTCCCCTTCGTCGCTTAGGCTTGCGGATGAAAGCTGACTTCACGCTTTCCCCCAGCCCCTCGGGGGAGGAGAGGCAATCTGGGAAATCCGGGTTAGCTGGCCCCTCTTGA

mRNA sequence

ATGGTCCAGGTGACCGGTCGGAAGAGCTCTTTCGTATGGTCAGCTCAACTATCCCCACGGCTTACTGAAAGGAAGCAACTTCCACAACCCCAAGCAAACTCCTCTCTTCTTAGTCAAGCAGCATCTGGCGCGTCCAACGCCCTACCTACTCTTTCCCAACCTGAAACTGCACTCATTCGTAGAAAGGGAGTCGTCGCGCGAGTCACTATGGTTGTCCGGTTTAGAGTCCTTCAGACGTCCTCAAATATTGAAGCAAGGCGCAAAGAATATTGCAACCTATCCCCCTTTCCACGGAGTGGGCTGACTTTGCACCTCGTCCTCTCCTCCATCTCAGTCGAGCTTCTCTTTCGGGATGCGAGAGGCTTGCGGATGAAAGCTGACTTCACGCTTTCCCCCAGCCCCTCGGGGGAGGAGAGGCAATCTGGGAAATCCGGGTTAGCTGGCCCCTCTTGA

Coding sequence (CDS)

ATGGTCCAGGTGACCGGTCGGAAGAGCTCTTTCGTATGGTCAGCTCAACTATCCCCACGGCTTACTGAAAGGAAGCAACTTCCACAACCCCAAGCAAACTCCTCTCTTCTTAGTCAAGCAGCATCTGGCGCGTCCAACGCCCTACCTACTCTTTCCCAACCTGAAACTGCACTCATTCGTAGAAAGGGAGTCGTCGCGCGAGTCACTATGGTTGTCCGGTTTAGAGTCCTTCAGACGTCCTCAAATATTGAAGCAAGGCGCAAAGAATATTGCAACCTATCCCCCTTTCCACGGAGTGGGCTGACTTTGCACCTCGTCCTCTCCTCCATCTCAGTCGAGCTTCTCTTTCGGGATGCGAGAGGCTTGCGGATGAAAGCTGACTTCACGCTTTCCCCCAGCCCCTCGGGGGAGGAGAGGCAATCTGGGAAATCCGGGTTAGCTGGCCCCTCTTGA
Homology
[Close]
BLAST of CSPI01G14670 vs. TrEMBL
Match: A0A0A0LVS0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G163120 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 7.4e-36
Identity = 100/138 (72.46%), Postives = 107/138 (77.54%), Query Frame = 1 

Query: 21  LTERKQLPQPQANSSLLSQAASGASNALPTLSQPETALIRRKGVVARVTMVVRFRVLQTS 80
           LTERKQLPQPQANSSLLSQAASGASNALPTLSQPETALIRRK VVARVTMVVRFRVLQTS
Sbjct: 10  LTERKQLPQPQANSSLLSQAASGASNALPTLSQPETALIRRKEVVARVTMVVRFRVLQTS 69

Query: 81  S--NIEARRKEYCNLSPFP-----RSGLTLHLVLSSISVELLFRDAR-GLRMKADFTLSP 140
           S  +I  + K    LSP P     +SG +  ++L     E      R GL+MKADFTLSP
Sbjct: 70  SVLSISLQMKADFTLSPSPSGEERQSGKSGQMILIPWKKERPIPLRRLGLQMKADFTLSP 129

Query: 141 SPSGEERQSGKSGLAGPS 151
           SPSGEERQSGKSGLAGPS
Sbjct: 130 SPSGEERQSGKSGLAGPS 147

[Close]
BLAST of CSPI01G14670 vs. NCBI nr
Match: gi|700209831|gb|KGN64927.1| (hypothetical protein Csa_1G163120 [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 1.1e-35
Identity = 100/138 (72.46%), Postives = 107/138 (77.54%), Query Frame = 1 

Query: 21  LTERKQLPQPQANSSLLSQAASGASNALPTLSQPETALIRRKGVVARVTMVVRFRVLQTS 80
           LTERKQLPQPQANSSLLSQAASGASNALPTLSQPETALIRRK VVARVTMVVRFRVLQTS
Sbjct: 10  LTERKQLPQPQANSSLLSQAASGASNALPTLSQPETALIRRKEVVARVTMVVRFRVLQTS 69

Query: 81  S--NIEARRKEYCNLSPFP-----RSGLTLHLVLSSISVELLFRDAR-GLRMKADFTLSP 140
           S  +I  + K    LSP P     +SG +  ++L     E      R GL+MKADFTLSP
Sbjct: 70  SVLSISLQMKADFTLSPSPSGEERQSGKSGQMILIPWKKERPIPLRRLGLQMKADFTLSP 129

Query: 141 SPSGEERQSGKSGLAGPS 151
           SPSGEERQSGKSGLAGPS
Sbjct: 130 SPSGEERQSGKSGLAGPS 147

The following BLAST results are available for this feature:
BLAST of CSPI01G14670 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G14670 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVS0_CUCSA7.4e-3672.46Uncharacterized protein OS=Cucumis sativus GN=Csa_1G163120 PE=4 SV=1[more]
BLAST of CSPI01G14670 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI01G14670 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209831|gb|KGN64927.1|1.1e-3572.46hypothetical protein Csa_1G163120 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G14670.1CSPI01G14670.1mRNA