Csa1G145900 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G145900
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 9732386 .. 9732601 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGGGAAAGAGGCAAGGAATTTATGGAGGTAAGAGGAGCAGTGGCAATAAAGCACCTGAAGTTAATGCTGTTTGTTCTCTCAAATCTCCATCTGTCAGCAGCCCCCTAAACGACTTCAATGCTGCTAATAAGAAGATCCAACTTGATGGGTCGCACAAAACAGCCTGTAAAGGAACACATGGGTTCTGGTATGCCAACGGGAAGAGGAAGTAA

mRNA sequence

ATGTGGGGAAAGAGGCAAGGAATTTATGGAGGTAAGAGGAGCAGTGGCAATAAAGCACCTGAAGTTAATGCTGTTTGTTCTCTCAAATCTCCATCTGTCAGCAGCCCCCTAAACGACTTCAATGCTGCTAATAAGAAGATCCAACTTGATGGGTCGCACAAAACAGCCTGTAAAGGAACACATGGGTTCTGGTATGCCAACGGGAAGAGGAAGTAA

Coding sequence (CDS)

ATGTGGGGAAAGAGGCAAGGAATTTATGGAGGTAAGAGGAGCAGTGGCAATAAAGCACCTGAAGTTAATGCTGTTTGTTCTCTCAAATCTCCATCTGTCAGCAGCCCCCTAAACGACTTCAATGCTGCTAATAAGAAGATCCAACTTGATGGGTCGCACAAAACAGCCTGTAAAGGAACACATGGGTTCTGGTATGCCAACGGGAAGAGGAAGTAA

Protein sequence

MWGKRQGIYGGKRSSGNKAPEVNAVCSLKSPSVSSPLNDFNAANKKIQLDGSHKTACKGTHGFWYANGKRK*
Homology
[Close]
BLAST of Csa1G145900 vs. TrEMBL
Match: A0A0A0LSX1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G145900 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 6.6e-35
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 

Query: 1  MWGKRQGIYGGKRSSGNKAPEVNAVCSLKSPSVSSPLNDFNAANKKIQLDGSHKTACKGT 60
          MWGKRQGIYGGKRSSGNKAPEVNAVCSLKSPSVSSPLNDFNAANKKIQLDGSHKTACKGT
Sbjct: 1  MWGKRQGIYGGKRSSGNKAPEVNAVCSLKSPSVSSPLNDFNAANKKIQLDGSHKTACKGT 60

Query: 61 HGFWYANGKRK 72
          HGFWYANGKRK
Sbjct: 61 HGFWYANGKRK 71

[Close]
BLAST of Csa1G145900 vs. TrEMBL
Match: A0A0A0L3L4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G437510 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 9.9e-07
Identity = 30/57 (52.63%), Postives = 38/57 (66.67%), Query Frame = 1 

Query: 12  KRSSGNKAPEVNAVCSLKSPSVSSPLNDFNAANKK-IQLDGSHKTACKGTHGFWYAN 68
           +++SGNK  +VNAVCS K P V+S LN+    NKK   L G  K  CKG+ GFWY+N
Sbjct: 117 EKNSGNKKSKVNAVCSSKIPFVNSSLNELIGTNKKESNLIGPTKAPCKGSSGFWYSN 173

[Close]
BLAST of Csa1G145900 vs. TrEMBL
Match: A0A0A0L3L4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G437510 PE=4 SV=1)

HSP 1 Score: 40.4 bits (93), Expect = 1.1e+00
Identity = 20/44 (45.45%), Postives = 29/44 (65.91%), Query Frame = 1 

Query: 1  MWGKRQGIYGGKRSSGNKAPEVNAVCSLKSPSVSSPLNDFNAAN 45
          M  + + ++  +++SGNK  EVNA CS K PSV+S LN+  A N
Sbjct: 53 MGKEAKDLWRKEKNSGNKESEVNAFCSPKIPSVNSSLNELIATN 96

[Close]
BLAST of Csa1G145900 vs. NCBI nr
Match: gi|700209792|gb|KGN64888.1| (hypothetical protein Csa_1G145900 [Cucumis sativus])

HSP 1 Score: 154.1 bits (388), Expect = 9.5e-35
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 

Query: 1  MWGKRQGIYGGKRSSGNKAPEVNAVCSLKSPSVSSPLNDFNAANKKIQLDGSHKTACKGT 60
          MWGKRQGIYGGKRSSGNKAPEVNAVCSLKSPSVSSPLNDFNAANKKIQLDGSHKTACKGT
Sbjct: 1  MWGKRQGIYGGKRSSGNKAPEVNAVCSLKSPSVSSPLNDFNAANKKIQLDGSHKTACKGT 60

Query: 61 HGFWYANGKRK 72
          HGFWYANGKRK
Sbjct: 61 HGFWYANGKRK 71

[Close]
BLAST of Csa1G145900 vs. NCBI nr
Match: gi|700199573|gb|KGN54731.1| (hypothetical protein Csa_4G437510 [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 1.4e-06
Identity = 30/57 (52.63%), Postives = 38/57 (66.67%), Query Frame = 1 

Query: 12  KRSSGNKAPEVNAVCSLKSPSVSSPLNDFNAANKK-IQLDGSHKTACKGTHGFWYAN 68
           +++SGNK  +VNAVCS K P V+S LN+    NKK   L G  K  CKG+ GFWY+N
Sbjct: 117 EKNSGNKKSKVNAVCSSKIPFVNSSLNELIGTNKKESNLIGPTKAPCKGSSGFWYSN 173

[Close]
BLAST of Csa1G145900 vs. NCBI nr
Match: gi|700199573|gb|KGN54731.1| (hypothetical protein Csa_4G437510 [Cucumis sativus])

HSP 1 Score: 40.4 bits (93), Expect = 1.5e+00
Identity = 20/44 (45.45%), Postives = 29/44 (65.91%), Query Frame = 1 

Query: 1  MWGKRQGIYGGKRSSGNKAPEVNAVCSLKSPSVSSPLNDFNAAN 45
          M  + + ++  +++SGNK  EVNA CS K PSV+S LN+  A N
Sbjct: 53 MGKEAKDLWRKEKNSGNKESEVNAFCSPKIPSVNSSLNELIATN 96

The following BLAST results are available for this feature:
BLAST of Csa1G145900 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSX1_CUCSA6.6e-35100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G145900 PE=4 SV=1[more]
A0A0A0L3L4_CUCSA9.9e-0752.63Uncharacterized protein OS=Cucumis sativus GN=Csa_4G437510 PE=4 SV=1[more]
A0A0A0L3L4_CUCSA1.1e+0045.45Uncharacterized protein OS=Cucumis sativus GN=Csa_4G437510 PE=4 SV=1[more]
BLAST of Csa1G145900 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209792|gb|KGN64888.1|9.5e-35100.00hypothetical protein Csa_1G145900 [Cucumis sativus][more]
gi|700199573|gb|KGN54731.1|1.4e-0652.63hypothetical protein Csa_4G437510 [Cucumis sativus][more]
gi|700199573|gb|KGN54731.1|1.5e+0045.45hypothetical protein Csa_4G437510 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G145900.1Csa1G145900.1mRNA