CSPI01G14260 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G14260
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr1 : 9866131 .. 9866346 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGGGAAAGAGGCAAGGAATTTATGGAGGTAAGAGGAGCAGTGGCAATAAAGCACCTGAAGTTAATGCTGTTTGTTCTCTCAAATCTCCATCTGTCAGCAGCCCCCTAAACGACTTCAATGCTGCTAATAAGAAGATCCAACTTGATGGGTTGCACAAAACAGCCTGTAAAGGAACACATGGGTTCTGGTATGCCAACGGGAAGAGGAAGTAA

mRNA sequence

ATGTGGGGAAAGAGGCAAGGAATTTATGGAGGTAAGAGGAGCAGTGGCAATAAAGCACCTGAAGTTAATGCTGTTTGTTCTCTCAAATCTCCATCTGTCAGCAGCCCCCTAAACGACTTCAATGCTGCTAATAAGAAGATCCAACTTGATGGGTTGCACAAAACAGCCTGTAAAGGAACACATGGGTTCTGGTATGCCAACGGGAAGAGGAAGTAA

Coding sequence (CDS)

ATGTGGGGAAAGAGGCAAGGAATTTATGGAGGTAAGAGGAGCAGTGGCAATAAAGCACCTGAAGTTAATGCTGTTTGTTCTCTCAAATCTCCATCTGTCAGCAGCCCCCTAAACGACTTCAATGCTGCTAATAAGAAGATCCAACTTGATGGGTTGCACAAAACAGCCTGTAAAGGAACACATGGGTTCTGGTATGCCAACGGGAAGAGGAAGTAA

Homology

[Close]

BLAST of CSPI01G14260 vs. TrEMBL
Match: A0A0A0LSX1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G145900 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 4.3e-34
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = 1


Query: 1  MWGKRQGIYGGKRSSGNKAPEVNAVCSLKSPSVSSPLNDFNAANKKIQLDGLHKTACKGT 60
          MWGKRQGIYGGKRSSGNKAPEVNAVCSLKSPSVSSPLNDFNAANKKIQLDG HKTACKGT
Sbjct: 1  MWGKRQGIYGGKRSSGNKAPEVNAVCSLKSPSVSSPLNDFNAANKKIQLDGSHKTACKGT 60

Query: 61 HGFWYANGKRK 72
          HGFWYANGKRK
Sbjct: 61 HGFWYANGKRK 71

[Close]

BLAST of CSPI01G14260 vs. TrEMBL
Match: A0A0A0L3L4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G437510 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.7e-06
Identity = 30/57 (52.63%), Postives = 38/57 (66.67%), Query Frame = 1


Query: 12  KRSSGNKAPEVNAVCSLKSPSVSSPLNDFNAANKK-IQLDGLHKTACKGTHGFWYAN 68
           +++SGNK  +VNAVCS K P V+S LN+    NKK   L G  K  CKG+ GFWY+N
Sbjct: 117 EKNSGNKKSKVNAVCSSKIPFVNSSLNELIGTNKKESNLIGPTKAPCKGSSGFWYSN 173

[Close]

BLAST of CSPI01G14260 vs. NCBI nr
Match: gi|700209792|gb|KGN64888.1| (hypothetical protein Csa_1G145900 [Cucumis sativus])

HSP 1 Score: 151.4 bits (381), Expect = 6.1e-34
Identity = 70/71 (98.59%), Postives = 70/71 (98.59%), Query Frame = 1


Query: 1  MWGKRQGIYGGKRSSGNKAPEVNAVCSLKSPSVSSPLNDFNAANKKIQLDGLHKTACKGT 60
          MWGKRQGIYGGKRSSGNKAPEVNAVCSLKSPSVSSPLNDFNAANKKIQLDG HKTACKGT
Sbjct: 1  MWGKRQGIYGGKRSSGNKAPEVNAVCSLKSPSVSSPLNDFNAANKKIQLDGSHKTACKGT 60

Query: 61 HGFWYANGKRK 72
          HGFWYANGKRK
Sbjct: 61 HGFWYANGKRK 71

[Close]

BLAST of CSPI01G14260 vs. NCBI nr
Match: gi|700199573|gb|KGN54731.1| (hypothetical protein Csa_4G437510 [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 2.4e-06
Identity = 30/57 (52.63%), Postives = 38/57 (66.67%), Query Frame = 1


Query: 12  KRSSGNKAPEVNAVCSLKSPSVSSPLNDFNAANKK-IQLDGLHKTACKGTHGFWYAN 68
           +++SGNK  +VNAVCS K P V+S LN+    NKK   L G  K  CKG+ GFWY+N
Sbjct: 117 EKNSGNKKSKVNAVCSSKIPFVNSSLNELIGTNKKESNLIGPTKAPCKGSSGFWYSN 173

The following BLAST results are available for this feature:

BLAST of CSPI01G14260 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G14260 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LSX1_CUCSA	4.3e-34	98.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G145900 PE=4 SV=1	[more]
A0A0A0L3L4_CUCSA	1.7e-06	52.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G437510 PE=4 SV=1	[more]

BLAST of CSPI01G14260 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI01G14260 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209792\|gb\|KGN64888.1\|	6.1e-34	98.59	hypothetical protein Csa_1G145900 [Cucumis sativus]	[more]
gi\|700199573\|gb\|KGN54731.1\|	2.4e-06	52.63	hypothetical protein Csa_4G437510 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G14260.1	CSPI01G14260.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G14260	Csa1G145900	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G14260	MELO3C004811	Melon (DHL92) v3.5.1	cpimeB011

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G14260	Watermelon (97103) v2	cpiwmbB009
CSPI01G14260	Watermelon (97103) v2	cpiwmbB026
CSPI01G14260	Wax gourd	cpiwgoB049
CSPI01G14260	Cucumber (Gy14) v1	cgycpiB318
CSPI01G14260	Cucurbita maxima (Rimu)	cmacpiB163
CSPI01G14260	Cucurbita maxima (Rimu)	cmacpiB205
CSPI01G14260	Cucurbita moschata (Rifu)	cmocpiB148
CSPI01G14260	Cucurbita moschata (Rifu)	cmocpiB192
CSPI01G14260	Watermelon (Charleston Gray)	cpiwcgB027
CSPI01G14260	Watermelon (97103) v1	cpiwmB047
CSPI01G14260	Watermelon (97103) v1	cpiwmB070
CSPI01G14260	Cucurbita pepo (Zucchini)	cpecpiB518
CSPI01G14260	Cucurbita pepo (Zucchini)	cpecpiB809
CSPI01G14260	Bottle gourd (USVL1VR-Ls)	cpilsiB006
CSPI01G14260	Bottle gourd (USVL1VR-Ls)	cpilsiB046
CSPI01G14260	Melon (DHL92) v3.6.1	cpimedB011
CSPI01G14260	Cucumber (Gy14) v2	cgybcpiB001
CSPI01G14260	Silver-seed gourd	carcpiB0192
CSPI01G14260	Cucumber (Chinese Long) v3	cpicucB001