Csa1G126040 (gene) Cucumber (Chinese Long) v2

NameCsa1G126040
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 9317160 .. 9317494 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGAACGAGGTTATGTCTGTGGTAACGGTGGATATGAAGCGTCAAACCGCACTGCAGACACTTTCTGACATAAGGATCCTGTTCTCTTTCCTTTTTATATTTTGGAGATTTATGTATTCCATTGAAATATGAACTCGGTTACTAGTTTTGAAGTCAAGGTATTTCCTCTGATGAATGGGTGTTTTCTCTCTCCGAGGTTTGGAAATCCTTTGGAAGATGCAGGCCTTGTAATCTTTGGTCTGCTTAACGAACGCTACGCTCAATGTTTTGATGTCCATAAACTGTTTTTTTGTGGAATTAGCAACCCTGTGGATGACAACGCGTTCTTTTGA

mRNA sequence

ATGTGGAACGAGGTTATGTCTGTGGTAACGGTGGATATGAAGCGTCAAACCGCACTGCAGACACTTTCTGACATAAGGATCCTGTTTGGAAATCCTTTGGAAGATGCAGGCCTTGTAATCTTTGGTCTGCTTAACGAACGCTACGCTCAATGTTTTGATGTCCATAAACTGTTTTTTTGTGGAATTAGCAACCCTGTGGATGACAACGCGTTCTTTTGA

Coding sequence (CDS)

ATGTGGAACGAGGTTATGTCTGTGGTAACGGTGGATATGAAGCGTCAAACCGCACTGCAGACACTTTCTGACATAAGGATCCTGTTTGGAAATCCTTTGGAAGATGCAGGCCTTGTAATCTTTGGTCTGCTTAACGAACGCTACGCTCAATGTTTTGATGTCCATAAACTGTTTTTTTGTGGAATTAGCAACCCTGTGGATGACAACGCGTTCTTTTGA

Protein sequence

MWNEVMSVVTVDMKRQTALQTLSDIRILFGNPLEDAGLVIFGLLNERYAQCFDVHKLFFCGISNPVDDNAFF*
BLAST of Csa1G126040 vs. TrEMBL
Match: A0A0A0LVI3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G126040 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 7.4e-34
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1

Query: 1  MWNEVMSVVTVDMKRQTALQTLSDIRILFGNPLEDAGLVIFGLLNERYAQCFDVHKLFFC 60
          MWNEVMSVVTVDMKRQTALQTLSDIRILFGNPLEDAGLVIFGLLNERYAQCFDVHKLFFC
Sbjct: 1  MWNEVMSVVTVDMKRQTALQTLSDIRILFGNPLEDAGLVIFGLLNERYAQCFDVHKLFFC 60

Query: 61 GISNPVDDNAFF 73
          GISNPVDDNAFF
Sbjct: 61 GISNPVDDNAFF 72

BLAST of Csa1G126040 vs. NCBI nr
Match: gi|700209746|gb|KGN64842.1| (hypothetical protein Csa_1G126040 [Cucumis sativus])

HSP 1 Score: 150.6 bits (379), Expect = 1.1e-33
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1

Query: 1  MWNEVMSVVTVDMKRQTALQTLSDIRILFGNPLEDAGLVIFGLLNERYAQCFDVHKLFFC 60
          MWNEVMSVVTVDMKRQTALQTLSDIRILFGNPLEDAGLVIFGLLNERYAQCFDVHKLFFC
Sbjct: 1  MWNEVMSVVTVDMKRQTALQTLSDIRILFGNPLEDAGLVIFGLLNERYAQCFDVHKLFFC 60

Query: 61 GISNPVDDNAFF 73
          GISNPVDDNAFF
Sbjct: 61 GISNPVDDNAFF 72

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LVI3_CUCSA7.4e-34100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G126040 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|700209746|gb|KGN64842.1|1.1e-33100.00hypothetical protein Csa_1G126040 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU090314cucumber EST collection version 3.0transcribed_cluster
CU103217cucumber EST collection version 3.0transcribed_cluster
CU103358cucumber EST collection version 3.0transcribed_cluster
CU110192cucumber EST collection version 3.0transcribed_cluster
CU131018cucumber EST collection version 3.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G126040.1Csa1G126040.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU131018CU131018transcribed_cluster
CU110192CU110192transcribed_cluster
CU103358CU103358transcribed_cluster
CU103217CU103217transcribed_cluster
CU090314CU090314transcribed_cluster


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None