Csa1G089480 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G089480
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 8352899 .. 8353238 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAATTGGGATTGCCGAGCCCAGCCCAGCCCCTCTCAAGTTTGCACTTTGCACGCCATATCCAATCTCCTCCACGGCTACCCTGCAAAAGGAGACCACCACGACTCAGCCGTCTGGGATTCCCGAGCTCCACCGTCTCCTCAACTTCGAGTTCGACGTTGCACCCAAACCAATGAAGAAGAATCGGTAGGAAGTGGTCATCGAAAAACCCAATTTCTAGAAGTCTCCAACTGATGCTCTTCATCTTGCTATGATACAATCAACTTTCATCCGCCCAAAAATCTTAGCCAAAGCGATGTCAATATGTTACTAATTACAAAAGGAAAACTGGAAACTG

mRNA sequence

ATGGGTAATTGGGATTGCCGAGCCCAGCCCAGCCCCTCTCAAGTTTGCACTTTGCACGCCATATCCAATCTCCTCCACGGCTACCCTGCAAAAGGAGACCACCACGACTCAGCCGTCTGGGATTCCCGAGCTCCACCGTCTCCTCAACTTCGAGTTCGACGTTGCACCCAAACCAATGAAGAAGAATCGGTAGGAAGTGGTCATCGAAAAACCCAATTTCTAGAAGTCTCCAACTGA

Coding sequence (CDS)

ATGGGTAATTGGGATTGCCGAGCCCAGCCCAGCCCCTCTCAAGTTTGCACTTTGCACGCCATATCCAATCTCCTCCACGGCTACCCTGCAAAAGGAGACCACCACGACTCAGCCGTCTGGGATTCCCGAGCTCCACCGTCTCCTCAACTTCGAGTTCGACGTTGCACCCAAACCAATGAAGAAGAATCGGTAGGAAGTGGTCATCGAAAAACCCAATTTCTAGAAGTCTCCAACTGA

Protein sequence

MGNWDCRAQPSPSQVCTLHAISNLLHGYPAKGDHHDSAVWDSRAPPSPQLRVRRCTQTNEEESVGSGHRKTQFLEVSN*
Homology
[Close]
BLAST of Csa1G089480 vs. TrEMBL
Match: A0A0A0LUT0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G089480 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 5.7e-40
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1 

Query: 1  MGNWDCRAQPSPSQVCTLHAISNLLHGYPAKGDHHDSAVWDSRAPPSPQLRVRRCTQTNE 60
          MGNWDCRAQPSPSQVCTLHAISNLLHGYPAKGDHHDSAVWDSRAPPSPQLRVRRCTQTNE
Sbjct: 1  MGNWDCRAQPSPSQVCTLHAISNLLHGYPAKGDHHDSAVWDSRAPPSPQLRVRRCTQTNE 60

Query: 61 EESVGSGHRKTQFLEVSN 79
          EESVGSGHRKTQFLEVSN
Sbjct: 61 EESVGSGHRKTQFLEVSN 78

[Close]
BLAST of Csa1G089480 vs. NCBI nr
Match: gi|700209663|gb|KGN64759.1| (hypothetical protein Csa_1G089480 [Cucumis sativus])

HSP 1 Score: 171.0 bits (432), Expect = 8.2e-40
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1 

Query: 1  MGNWDCRAQPSPSQVCTLHAISNLLHGYPAKGDHHDSAVWDSRAPPSPQLRVRRCTQTNE 60
          MGNWDCRAQPSPSQVCTLHAISNLLHGYPAKGDHHDSAVWDSRAPPSPQLRVRRCTQTNE
Sbjct: 1  MGNWDCRAQPSPSQVCTLHAISNLLHGYPAKGDHHDSAVWDSRAPPSPQLRVRRCTQTNE 60

Query: 61 EESVGSGHRKTQFLEVSN 79
          EESVGSGHRKTQFLEVSN
Sbjct: 61 EESVGSGHRKTQFLEVSN 78

The following BLAST results are available for this feature:
BLAST of Csa1G089480 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUT0_CUCSA5.7e-40100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G089480 PE=4 SV=1[more]
BLAST of Csa1G089480 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209663|gb|KGN64759.1|8.2e-40100.00hypothetical protein Csa_1G089480 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU127981cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G089480.1Csa1G089480.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU127981CU127981transcribed_cluster