Csa1G050120 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G050120
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 5741990 .. 5744594 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAGATTCAAATCTTTTAATATAAATAAATAGTATTTTAATGGATAAGTTATATTGGGTATTTTGAAATCAACCTATTTGTTGAATTTTGAAATGTAAGAATATCCTATAATAGTTTTAATCAAATGGCTATTTTGAAAAAAATTTCTTTTTCTTAACCCAGGAACGATAATGGTTTAAGTAGTGTTTAACATATTCTAACCCTAATGTGATTGCTATCCATTTCGACTATGTTTTTTAAAAATAATCAAACATCGATTTTGTTAAATTGTTGGTAAGGGAAGATGAAAATTATGTTAAAAAACCAATCATTTAACCATGAGTGAGAAGCTTCTAACATGATAATTGGTGGTGAAGCTCTCTCTATTCACATAAATATAAGGTTAGTTTTTATTGATTATTTAGAATTTGGTTATTCATTGAAAATCTAATAAAAAATAGTAATTTGTGGCAAAATTGCATAGTCTTCTTGATGAGATACACAGTGATCGACATGATCAACATCTATCTGTGCACTTTATTTTGTAAATAGTTTGGATTTTTTTTTTTTTTTTTTTTTTGCTTGCTATATTTACACATTTTTTCTAATAACAAATAAAATTAGAACACACATGAAAAGATGTAATATATCCACAATTTCAAGAAATGTGTATATCATCTTCGCAATAACACTGAAGATAGTGAACGATATCTCTACCTAACGTTGATTGCTTTGAGATGATCTCATTTGTTCATCCATTTTCATTGCTTTGAGATGATCTCATTCGTTCATCCATTTTCATTGATTCCATGGGTCCTATCCTACCATTCAACATTGTATTTATATGTTTCTTTTTTTAATTAATAGTTATAATTTAAATAGTTTATTGTGTGGTATTTAATTAATTATCGTAATTATACTATTCAATAAATTAAATATACGATAGTAAGTTAATTCTCTTTGATTACAAATAATTAAATATACCATTACAATCTTTTTTCTAAATTATGATATCGATTCCTAACTTTAAAATTTTAAAATAATGAGAGTTATCATATTTGCTACTTGAAATCTAAGACTGGAATTGAAATAAAATTAGGATTGAAGGGTTAATTTGATCTAAAAATTACAAAGATGGTAGCTTTTGAAGTAGTAAAGATATAGGATGATTCAAAAAGAAAAAAATACATTTGATACTTTGAGTTGAAGGTAACTTAATTGTATATATAAGTTTTTAAATATAGACAATTTACATTTTTCCTGATGCTTGAAAATATATATATATATAATTTTTTTTGTTTTATTATACTTTTTAAATTACAAAATAGCAAATTTAAACGTTGACAACTTTCTAATAGTCTTAAGATATTGCTAATTGGTTCATATTTGTCATATTTCCATTATGAAAAAAAATGTCTCATGGACAATTTTTCACCGTAAAAAAGGACGTTTCAAAAATAAAAATAAAAATTATATAAGTGATTTTTTAAAAATAAAAAAATTGATAAAATATTTAAAAAGATAAAATTAATTAAACAAAATATTTTGTCATTGTATTCTTTTGACAATTTAGCATTAAATATAAATAATATAATAAAAAAGACAGTCGCAAATTTAGTAATTAAATTCAAAATAATTAACTATATAACAACTTTTTTAAAAATTGTAAATATAGTAAAATTTGTCAAAATCTATAAATGATATAGTCTATCACTAATAGACCATGTTATAAAAATTGATCTATTACCGATAGATCATACGAGTCTATCAGTGATATAAGTTTATCAGCGATATTTTTGCTATATTCATATTTTTATTTTAAATGTCGCTATATTATTAATTATTATGGGTGAAATTGTTATCCATTTCAATTACTAATAAAAAAAAAGCTAAATGGATTAACTGAAAGTTGGTAGGCCCAGAAAAATTGGGCTGGAGAGAAAGAAAGCCCAATATTTATCTTCGTCATGGAGTAAAACTTGGAGCTCGGCCGCTTGCCACTAACTCGCCGAGAAAAACCGGAGTTTCCTCTTGGCTCTGCGTATTCGAGAAAGGCGTTTCCATTTTCCAGACTTGTTTTAGAGCGAAAAACAGAGGCTCGTCACTCTGGGACTTCACCATTCTTCATTAAGAGTTAGCACCTTTTCTTAGCTTTCCCTTTTCTTTTTCCTTTATTTCGACTGTTATTGTTTCAAGTTCATTGTTTTCTTGAGAATTTCTTAGCGTCATTCATAGACTGAAACTTATTTGCATGACTCATTGGCTAAGTAGGAGTTTGAAATAAACAATGCTCGGTTTTGTTTTTTACGTGGGAATGAAGTGGGTTCTTGGGGGAAATAAGTGGGAAATTTTGACTGTGGATGCAAAGAAACTCTTCAATGAAAATGTCTTATTTGAACTTTTTGTTTTTCGCTCTTGTGGATTTTTCCTTTTTTTGGAACCCCATATCCGATTAACTGTTTGTGGACTTATCTAGCCATGATGTAATTTTTGTTTGGTGGAGAGGGAAAGAATTTTTGTTTTTCGCCTCTTCTAATATGAAAGATGTTGTGCATTGAAGGATCTCCCAAAAAGCTGGTCGAGGCTTCTCATGAAAGCCGTGGGAAGCTTTCTGTCTCCTGA

mRNA sequence

ATGCTCGGCCGCTTGCCACTAACTCGCCGAGAAAAACCGGAGTTTCCTCTTGGCTCTGCGTATTCGAGAAAGGCGTTTCCATTTTCCAGACTTGTTTTAGAGCGAAAAACAGAGGCTCGTCACTCTGGGACTTCACCATTCTTCATTAAGAGATCTCCCAAAAAGCTGGTCGAGGCTTCTCATGAAAGCCGTGGGAAGCTTTCTGTCTCCTGA

Coding sequence (CDS)

ATGCTCGGCCGCTTGCCACTAACTCGCCGAGAAAAACCGGAGTTTCCTCTTGGCTCTGCGTATTCGAGAAAGGCGTTTCCATTTTCCAGACTTGTTTTAGAGCGAAAAACAGAGGCTCGTCACTCTGGGACTTCACCATTCTTCATTAAGAGATCTCCCAAAAAGCTGGTCGAGGCTTCTCATGAAAGCCGTGGGAAGCTTTCTGTCTCCTGA

Protein sequence

MLGRLPLTRREKPEFPLGSAYSRKAFPFSRLVLERKTEARHSGTSPFFIKRSPKKLVEASHESRGKLSVS*
Homology
[Close]
BLAST of Csa1G050120 vs. TrEMBL
Match: A0A0A0LRF2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050120 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 7.5e-31
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MLGRLPLTRREKPEFPLGSAYSRKAFPFSRLVLERKTEARHSGTSPFFIKRSPKKLVEAS 60
          MLGRLPLTRREKPEFPLGSAYSRKAFPFSRLVLERKTEARHSGTSPFFIKRSPKKLVEAS
Sbjct: 1  MLGRLPLTRREKPEFPLGSAYSRKAFPFSRLVLERKTEARHSGTSPFFIKRSPKKLVEAS 60

Query: 61 HESRGKLSVS 71
          HESRGKLSVS
Sbjct: 61 HESRGKLSVS 70

[Close]
BLAST of Csa1G050120 vs. NCBI nr
Match: gi|700209277|gb|KGN64373.1| (hypothetical protein Csa_1G050120 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 1.1e-30
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

Query: 1  MLGRLPLTRREKPEFPLGSAYSRKAFPFSRLVLERKTEARHSGTSPFFIKRSPKKLVEAS 60
          MLGRLPLTRREKPEFPLGSAYSRKAFPFSRLVLERKTEARHSGTSPFFIKRSPKKLVEAS
Sbjct: 1  MLGRLPLTRREKPEFPLGSAYSRKAFPFSRLVLERKTEARHSGTSPFFIKRSPKKLVEAS 60

Query: 61 HESRGKLSVS 71
          HESRGKLSVS
Sbjct: 61 HESRGKLSVS 70

The following BLAST results are available for this feature:
BLAST of Csa1G050120 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRF2_CUCSA7.5e-31100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050120 PE=4 SV=1[more]
BLAST of Csa1G050120 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209277|gb|KGN64373.1|1.1e-30100.00hypothetical protein Csa_1G050120 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU112751cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G050120.1Csa1G050120.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU112751CU112751transcribed_cluster