Csa1G046320 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G046320
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 5457967 .. 5458244 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGGAACATTCAATCCACAGAAATGGACCCAATACATTCAAAGCAAAACAGTACGGAATTTGAAAAAGATGTTCTGACTGCGACTGTGACTTAGCAAACGTGTAATCTGTCACCGACCCAAACACTTCTCGCCACCTGTTTTCCACGCGTGTGCTCTTTTCCTTAAATCTTCGGGTTTCATTTCTCATCCCCATACCCGACCCGACCCTACTCTCTTTACTCTCACCGTCTTCTTACGTCACCCTGATGTCGCACACCTTTCCCGACTTTAA

mRNA sequence

ATGGAGAAGGAACATTCAATCCACAGAAATGGACCCAATACATTCAAAGCAAAACACAAACGTGTAATCTGTCACCGACCCAAACACTTCTCGCCACCTGTTTTCCACGCGTGTGCTCTTTTCCTTAAATCTTCGGGTTTCATTTCTCATCCCCATACCCGACCCGACCCTACTCTCTTTACTCTCACCGTCTTCTTACGTCACCCTGATGTCGCACACCTTTCCCGACTTTAA

Coding sequence (CDS)

ATGGAGAAGGAACATTCAATCCACAGAAATGGACCCAATACATTCAAAGCAAAACACAAACGTGTAATCTGTCACCGACCCAAACACTTCTCGCCACCTGTTTTCCACGCGTGTGCTCTTTTCCTTAAATCTTCGGGTTTCATTTCTCATCCCCATACCCGACCCGACCCTACTCTCTTTACTCTCACCGTCTTCTTACGTCACCCTGATGTCGCACACCTTTCCCGACTTTAA

Protein sequence

MEKEHSIHRNGPNTFKAKHKRVICHRPKHFSPPVFHACALFLKSSGFISHPHTRPDPTLFTLTVFLRHPDVAHLSRL*

Homology

[Close]

BLAST of Csa1G046320 vs. TrEMBL
Match: A0A0A0LU60_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046320 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.6e-39
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1


Query: 1  MEKEHSIHRNGPNTFKAKHKRVICHRPKHFSPPVFHACALFLKSSGFISHPHTRPDPTLF 60
          MEKEHSIHRNGPNTFKAKHKRVICHRPKHFSPPVFHACALFLKSSGFISHPHTRPDPTLF
Sbjct: 1  MEKEHSIHRNGPNTFKAKHKRVICHRPKHFSPPVFHACALFLKSSGFISHPHTRPDPTLF 60

Query: 61 TLTVFLRHPDVAHLSRL 78
          TLTVFLRHPDVAHLSRL
Sbjct: 61 TLTVFLRHPDVAHLSRL 77

[Close]

BLAST of Csa1G046320 vs. NCBI nr
Match: gi|700209241|gb|KGN64337.1| (hypothetical protein Csa_1G046320 [Cucumis sativus])

HSP 1 Score: 169.5 bits (428), Expect = 2.4e-39
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1


Query: 1  MEKEHSIHRNGPNTFKAKHKRVICHRPKHFSPPVFHACALFLKSSGFISHPHTRPDPTLF 60
          MEKEHSIHRNGPNTFKAKHKRVICHRPKHFSPPVFHACALFLKSSGFISHPHTRPDPTLF
Sbjct: 1  MEKEHSIHRNGPNTFKAKHKRVICHRPKHFSPPVFHACALFLKSSGFISHPHTRPDPTLF 60

Query: 61 TLTVFLRHPDVAHLSRL 78
          TLTVFLRHPDVAHLSRL
Sbjct: 61 TLTVFLRHPDVAHLSRL 77

The following BLAST results are available for this feature:

BLAST of Csa1G046320 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LU60_CUCSA	1.6e-39	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046320 PE=4 SV=1	[more]

BLAST of Csa1G046320 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209241\|gb\|KGN64337.1\|	2.4e-39	100.00	hypothetical protein Csa_1G046320 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G046320.1	Csa1G046320.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G046320	CsGy1G008680	Cucumber (Gy14) v2	cgybcuB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G046320	Cucumber (Gy14) v1	cgycuB106
Csa1G046320	Cucumber (Gy14) v1	cgycuB301
Csa1G046320	Cucurbita maxima (Rimu)	cmacuB066
Csa1G046320	Cucurbita maxima (Rimu)	cmacuB107
Csa1G046320	Cucurbita maxima (Rimu)	cmacuB217
Csa1G046320	Cucurbita maxima (Rimu)	cmacuB390
Csa1G046320	Cucurbita moschata (Rifu)	cmocuB057
Csa1G046320	Cucurbita moschata (Rifu)	cmocuB093
Csa1G046320	Cucurbita moschata (Rifu)	cmocuB202
Csa1G046320	Cucurbita moschata (Rifu)	cmocuB380
Csa1G046320	Melon (DHL92) v3.5.1	cumeB027
Csa1G046320	Melon (DHL92) v3.5.1	cumeB046
Csa1G046320	Watermelon (Charleston Gray)	cuwcgB001
Csa1G046320	Watermelon (Charleston Gray)	cuwcgB013
Csa1G046320	Watermelon (Charleston Gray)	cuwcgB073
Csa1G046320	Watermelon (Charleston Gray)	cuwcgB089
Csa1G046320	Watermelon (97103) v1	cuwmB000
Csa1G046320	Watermelon (97103) v1	cuwmB053
Csa1G046320	Watermelon (97103) v1	cuwmB086
Csa1G046320	Cucurbita pepo (Zucchini)	cpecuB029
Csa1G046320	Cucurbita pepo (Zucchini)	cpecuB358
Csa1G046320	Cucurbita pepo (Zucchini)	cpecuB505
Csa1G046320	Bottle gourd (USVL1VR-Ls)	culsiB085
Csa1G046320	Bottle gourd (USVL1VR-Ls)	culsiB022
Csa1G046320	Bottle gourd (USVL1VR-Ls)	culsiB028
Csa1G046320	Bottle gourd (USVL1VR-Ls)	culsiB064
Csa1G046320	Melon (DHL92) v3.6.1	cumedB022
Csa1G046320	Melon (DHL92) v3.6.1	cumedB039
Csa1G046320	Silver-seed gourd	carcuB0523
Csa1G046320	Silver-seed gourd	carcuB1019
Csa1G046320	Watermelon (97103) v2	cuwmbB001
Csa1G046320	Watermelon (97103) v2	cuwmbB072
Csa1G046320	Watermelon (97103) v2	cuwmbB087
Csa1G046320	Watermelon (97103) v2	cuwmbB088
Csa1G046320	Wax gourd	cuwgoB030
Csa1G046320	Cucumber (Chinese Long) v2	cucuB001
Csa1G046320	Cucumber (Chinese Long) v2	cucuB007