Csa1G046320 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G046320
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 5457967 .. 5458244 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGGAACATTCAATCCACAGAAATGGACCCAATACATTCAAAGCAAAACAGTACGGAATTTGAAAAAGATGTTCTGACTGCGACTGTGACTTAGCAAACGTGTAATCTGTCACCGACCCAAACACTTCTCGCCACCTGTTTTCCACGCGTGTGCTCTTTTCCTTAAATCTTCGGGTTTCATTTCTCATCCCCATACCCGACCCGACCCTACTCTCTTTACTCTCACCGTCTTCTTACGTCACCCTGATGTCGCACACCTTTCCCGACTTTAA

mRNA sequence

ATGGAGAAGGAACATTCAATCCACAGAAATGGACCCAATACATTCAAAGCAAAACACAAACGTGTAATCTGTCACCGACCCAAACACTTCTCGCCACCTGTTTTCCACGCGTGTGCTCTTTTCCTTAAATCTTCGGGTTTCATTTCTCATCCCCATACCCGACCCGACCCTACTCTCTTTACTCTCACCGTCTTCTTACGTCACCCTGATGTCGCACACCTTTCCCGACTTTAA

Coding sequence (CDS)

ATGGAGAAGGAACATTCAATCCACAGAAATGGACCCAATACATTCAAAGCAAAACACAAACGTGTAATCTGTCACCGACCCAAACACTTCTCGCCACCTGTTTTCCACGCGTGTGCTCTTTTCCTTAAATCTTCGGGTTTCATTTCTCATCCCCATACCCGACCCGACCCTACTCTCTTTACTCTCACCGTCTTCTTACGTCACCCTGATGTCGCACACCTTTCCCGACTTTAA

Protein sequence

MEKEHSIHRNGPNTFKAKHKRVICHRPKHFSPPVFHACALFLKSSGFISHPHTRPDPTLFTLTVFLRHPDVAHLSRL*
Homology
[Close]
BLAST of Csa1G046320 vs. TrEMBL
Match: A0A0A0LU60_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046320 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.6e-39
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1 

Query: 1  MEKEHSIHRNGPNTFKAKHKRVICHRPKHFSPPVFHACALFLKSSGFISHPHTRPDPTLF 60
          MEKEHSIHRNGPNTFKAKHKRVICHRPKHFSPPVFHACALFLKSSGFISHPHTRPDPTLF
Sbjct: 1  MEKEHSIHRNGPNTFKAKHKRVICHRPKHFSPPVFHACALFLKSSGFISHPHTRPDPTLF 60

Query: 61 TLTVFLRHPDVAHLSRL 78
          TLTVFLRHPDVAHLSRL
Sbjct: 61 TLTVFLRHPDVAHLSRL 77

[Close]
BLAST of Csa1G046320 vs. NCBI nr
Match: gi|700209241|gb|KGN64337.1| (hypothetical protein Csa_1G046320 [Cucumis sativus])

HSP 1 Score: 169.5 bits (428), Expect = 2.4e-39
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1 

Query: 1  MEKEHSIHRNGPNTFKAKHKRVICHRPKHFSPPVFHACALFLKSSGFISHPHTRPDPTLF 60
          MEKEHSIHRNGPNTFKAKHKRVICHRPKHFSPPVFHACALFLKSSGFISHPHTRPDPTLF
Sbjct: 1  MEKEHSIHRNGPNTFKAKHKRVICHRPKHFSPPVFHACALFLKSSGFISHPHTRPDPTLF 60

Query: 61 TLTVFLRHPDVAHLSRL 78
          TLTVFLRHPDVAHLSRL
Sbjct: 61 TLTVFLRHPDVAHLSRL 77

The following BLAST results are available for this feature:
BLAST of Csa1G046320 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LU60_CUCSA1.6e-39100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046320 PE=4 SV=1[more]
BLAST of Csa1G046320 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209241|gb|KGN64337.1|2.4e-39100.00hypothetical protein Csa_1G046320 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G046320.1Csa1G046320.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G046320CsGy1G008680Cucumber (Gy14) v2cgybcuB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G046320Cucurbita moschata (Rifu)cmocuB057
Csa1G046320Cucurbita moschata (Rifu)cmocuB093
Csa1G046320Cucurbita moschata (Rifu)cmocuB202
Csa1G046320Cucurbita moschata (Rifu)cmocuB380
Csa1G046320Melon (DHL92) v3.5.1cumeB027
Csa1G046320Melon (DHL92) v3.5.1cumeB046
Csa1G046320Watermelon (Charleston Gray)cuwcgB001
Csa1G046320Watermelon (Charleston Gray)cuwcgB013
Csa1G046320Watermelon (Charleston Gray)cuwcgB073
Csa1G046320Watermelon (Charleston Gray)cuwcgB089
Csa1G046320Watermelon (97103) v1cuwmB000
Csa1G046320Watermelon (97103) v1cuwmB053
Csa1G046320Watermelon (97103) v1cuwmB086
Csa1G046320Cucurbita pepo (Zucchini)cpecuB029
Csa1G046320Cucurbita pepo (Zucchini)cpecuB358
Csa1G046320Cucurbita pepo (Zucchini)cpecuB505
Csa1G046320Bottle gourd (USVL1VR-Ls)culsiB085
Csa1G046320Bottle gourd (USVL1VR-Ls)culsiB022
Csa1G046320Bottle gourd (USVL1VR-Ls)culsiB028
Csa1G046320Bottle gourd (USVL1VR-Ls)culsiB064
Csa1G046320Melon (DHL92) v3.6.1cumedB022
Csa1G046320Melon (DHL92) v3.6.1cumedB039
Csa1G046320Silver-seed gourdcarcuB0523
Csa1G046320Silver-seed gourdcarcuB1019
Csa1G046320Watermelon (97103) v2cuwmbB001
Csa1G046320Watermelon (97103) v2cuwmbB072
Csa1G046320Watermelon (97103) v2cuwmbB087
Csa1G046320Watermelon (97103) v2cuwmbB088
Csa1G046320Wax gourdcuwgoB030
Csa1G046320Cucumber (Chinese Long) v2cucuB001
Csa1G046320Cucumber (Chinese Long) v2cucuB007
Csa1G046320Cucumber (Gy14) v1cgycuB106
Csa1G046320Cucumber (Gy14) v1cgycuB301
Csa1G046320Cucurbita maxima (Rimu)cmacuB066
Csa1G046320Cucurbita maxima (Rimu)cmacuB107
Csa1G046320Cucurbita maxima (Rimu)cmacuB217
Csa1G046320Cucurbita maxima (Rimu)cmacuB390