Csa1G046290 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G046290
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 5440037 .. 5440319 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTTCAAGCAAGAGCCCTGCAGGTAATTTAATTTAATTTCATGATTCTTAATTAATTATTGTTATGTTGTGTGATTGATTTAATATCGATGTTTAGAATATAATTTTTGTGATTTAATATTATTTCAGCGATGAAGAACGACAGAAGAATTCGCCTGGGAGGAAAAGAGATATGAAGAAGGGTATACATGAGATCATGTGTAATAATGCTCCTTTGAGGGTTTCGACATCTGAACATCGAGACTACGGGGATGATCGAGTCATCAATCTTGACGCGTAA

mRNA sequence

ATGAATTTCAAGCAAGAGCCCTGCAGCGATGAAGAACGACAGAAGAATTCGCCTGGGAGGAAAAGAGATATGAAGAAGGGTATACATGAGATCATGTGTAATAATGCTCCTTTGAGGGTTTCGACATCTGAACATCGAGACTACGGGGATGATCGAGTCATCAATCTTGACGCGTAA

Coding sequence (CDS)

ATGAATTTCAAGCAAGAGCCCTGCAGCGATGAAGAACGACAGAAGAATTCGCCTGGGAGGAAAAGAGATATGAAGAAGGGTATACATGAGATCATGTGTAATAATGCTCCTTTGAGGGTTTCGACATCTGAACATCGAGACTACGGGGATGATCGAGTCATCAATCTTGACGCGTAA

Protein sequence

MNFKQEPCSDEERQKNSPGRKRDMKKGIHEIMCNNAPLRVSTSEHRDYGDDRVINLDA*
Homology
[Close]
BLAST of Csa1G046290 vs. TrEMBL
Match: A0A0A0LU54_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046290 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 2.1e-26
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1 

Query: 1  MNFKQEPCSDEERQKNSPGRKRDMKKGIHEIMCNNAPLRVSTSEHRDYGDDRVINLDA 59
          MNFKQEPCSDEERQKNSPGRKRDMKKGIHEIMCNNAPLRVSTSEHRDYGDDRVINLDA
Sbjct: 1  MNFKQEPCSDEERQKNSPGRKRDMKKGIHEIMCNNAPLRVSTSEHRDYGDDRVINLDA 58

[Close]
BLAST of Csa1G046290 vs. NCBI nr
Match: gi|778657870|ref|XP_011651709.1| (PREDICTED: tryptophan aminotransferase-related protein 2-like [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 3.0e-26
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1 

Query: 1  MNFKQEPCSDEERQKNSPGRKRDMKKGIHEIMCNNAPLRVSTSEHRDYGDDRVINLDA 59
          MNFKQEPCSDEERQKNSPGRKRDMKKGIHEIMCNNAPLRVSTSEHRDYGDDRVINLDA
Sbjct: 8  MNFKQEPCSDEERQKNSPGRKRDMKKGIHEIMCNNAPLRVSTSEHRDYGDDRVINLDA 65

[Close]
BLAST of Csa1G046290 vs. NCBI nr
Match: gi|700209236|gb|KGN64332.1| (hypothetical protein Csa_1G046290 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 3.0e-26
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1 

Query: 1  MNFKQEPCSDEERQKNSPGRKRDMKKGIHEIMCNNAPLRVSTSEHRDYGDDRVINLDA 59
          MNFKQEPCSDEERQKNSPGRKRDMKKGIHEIMCNNAPLRVSTSEHRDYGDDRVINLDA
Sbjct: 1  MNFKQEPCSDEERQKNSPGRKRDMKKGIHEIMCNNAPLRVSTSEHRDYGDDRVINLDA 58

[Close]
BLAST of Csa1G046290 vs. NCBI nr
Match: gi|659067302|ref|XP_008438732.1| (PREDICTED: tryptophan aminotransferase-related protein 2 [Cucumis melo])

HSP 1 Score: 101.3 bits (251), Expect = 6.0e-19
Identity = 50/59 (84.75%), Postives = 52/59 (88.14%), Query Frame = 1 

Query: 1  MNFKQEPCSDEERQKNSPGRKRDMKKGIHEIMC-NNAPLRVSTSEHRDYGDDRVINLDA 59
          M+FKQEPCSDEER K+SP RKRD KKGIHEIMC NN PLRVSTSE  DYGDDRVINLDA
Sbjct: 8  MSFKQEPCSDEERGKDSPVRKRDFKKGIHEIMCINNPPLRVSTSERGDYGDDRVINLDA 66

The following BLAST results are available for this feature:
BLAST of Csa1G046290 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LU54_CUCSA2.1e-26100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046290 PE=4 SV=1[more]
BLAST of Csa1G046290 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778657870|ref|XP_011651709.1|3.0e-26100.00PREDICTED: tryptophan aminotransferase-related protein 2-like [Cucumis sativus][more]
gi|700209236|gb|KGN64332.1|3.0e-26100.00hypothetical protein Csa_1G046290 [Cucumis sativus][more]
gi|659067302|ref|XP_008438732.1|6.0e-1984.75PREDICTED: tryptophan aminotransferase-related protein 2 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0008152 metabolic process
biological_process GO:0043562 cellular response to nitrogen levels
biological_process GO:0042742 defense response to bacterium
biological_process GO:0048467 gynoecium development
biological_process GO:0048527 lateral root development
biological_process GO:0010078 maintenance of root meristem identity
biological_process GO:0010087 phloem or xylem histogenesis
biological_process GO:0009958 positive gravitropism
biological_process GO:0009723 response to ethylene
cellular_component GO:0005575 cellular_component
cellular_component GO:0005789 endoplasmic reticulum membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0016846 carbon-sulfur lyase activity
molecular_function GO:0016740 transferase activity
molecular_function GO:0008483 transaminase activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU095248cucumber EST collection version 3.0transcribed_cluster
CU154845cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G046290.1Csa1G046290.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU095248CU095248transcribed_cluster
CU154845CU154845transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G046290Cla003445Watermelon (97103) v1cuwmB053
Csa1G046290ClCG01G013380Watermelon (Charleston Gray)cuwcgB013
Csa1G046290Cla97C01G012450Watermelon (97103) v2cuwmbB001
Csa1G046290Bhi08G001338Wax gourdcuwgoB030
Csa1G046290CSPI01G08710Wild cucumber (PI 183967)cpicuB000
Csa1G046290CmaCh13G008680Cucurbita maxima (Rimu)cmacuB217
Csa1G046290CmoCh13G009000Cucurbita moschata (Rifu)cmocuB202
Csa1G046290CsGy1G008640Cucumber (Gy14) v2cgybcuB001
Csa1G046290Carg07661Silver-seed gourdcarcuB1019
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G046290Watermelon (97103) v2cuwmbB017
Csa1G046290Watermelon (97103) v2cuwmbB072
Csa1G046290Watermelon (97103) v2cuwmbB087
Csa1G046290Watermelon (97103) v2cuwmbB088
Csa1G046290Wax gourdcuwgoB002
Csa1G046290Cucumber (Chinese Long) v2cucuB001
Csa1G046290Cucumber (Chinese Long) v2cucuB007
Csa1G046290Cucumber (Gy14) v1cgycuB106
Csa1G046290Cucumber (Gy14) v1cgycuB301
Csa1G046290Cucurbita maxima (Rimu)cmacuB066
Csa1G046290Cucurbita maxima (Rimu)cmacuB107
Csa1G046290Cucurbita maxima (Rimu)cmacuB233
Csa1G046290Cucurbita maxima (Rimu)cmacuB390
Csa1G046290Cucurbita moschata (Rifu)cmocuB057
Csa1G046290Cucurbita moschata (Rifu)cmocuB093
Csa1G046290Cucurbita moschata (Rifu)cmocuB219
Csa1G046290Cucurbita moschata (Rifu)cmocuB380
Csa1G046290Melon (DHL92) v3.5.1cumeB005
Csa1G046290Melon (DHL92) v3.5.1cumeB027
Csa1G046290Melon (DHL92) v3.5.1cumeB046
Csa1G046290Melon (DHL92) v3.5.1cumeB067
Csa1G046290Watermelon (Charleston Gray)cuwcgB001
Csa1G046290Watermelon (Charleston Gray)cuwcgB073
Csa1G046290Watermelon (Charleston Gray)cuwcgB089
Csa1G046290Watermelon (97103) v1cuwmB006
Csa1G046290Watermelon (97103) v1cuwmB000
Csa1G046290Watermelon (97103) v1cuwmB086
Csa1G046290Cucurbita pepo (Zucchini)cpecuB029
Csa1G046290Cucurbita pepo (Zucchini)cpecuB358
Csa1G046290Cucurbita pepo (Zucchini)cpecuB505
Csa1G046290Cucurbita pepo (Zucchini)cpecuB595
Csa1G046290Bottle gourd (USVL1VR-Ls)culsiB085
Csa1G046290Bottle gourd (USVL1VR-Ls)culsiB022
Csa1G046290Bottle gourd (USVL1VR-Ls)culsiB028
Csa1G046290Bottle gourd (USVL1VR-Ls)culsiB064
Csa1G046290Melon (DHL92) v3.6.1cumedB022
Csa1G046290Melon (DHL92) v3.6.1cumedB000
Csa1G046290Melon (DHL92) v3.6.1cumedB039
Csa1G046290Melon (DHL92) v3.6.1cumedB062
Csa1G046290Silver-seed gourdcarcuB0285
Csa1G046290Silver-seed gourdcarcuB0523