Csa1G042770 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G042770
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	EH-domain-containing protein
Location	Chr1 : 4490833 .. 4491913 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGTTTTATACTACTTATTTGGATTTTATTACATTAACCAATACCCAGATGTTTTTCTAATTCTAAATATTGTTTTCATTACAACCAGCTAATTTCTTTAGCACAAGCAGGGTATGACCTGGACTCAGATATCCTCAAGAACGCAGGCAAGACATCTTAACAATTCAAAGTTTCTTTGGCTTTTATTCTTGGAGTGTAACTGATTAATTTCTGTTCTGGATCAAGACATCAAATAATTCAGACATCTTATGCCAGAGCCTTTAATTTTATGCCATGTCTGAATTTATCAGTTGTATATTAGATCTATTGATTTGTTTTTACTTTATCTTCCTCTAATCCTCGAAATGTGACAGTGCTCTCGTTGTATATAATTCAAGAAGAAACGTAGTCTAAGCAATTTTTTTGTAGACTGCCCAGGTGAGAATATTGAGATTCAGGGACCGTAATTCTTTCTAACCGGTTAATTCATCCTCTAATGGTTGGTTCCTTGATTGACTTTATTGAATGTTATTGAACTAGATTATTTGAAAACTATTAGTGAAAAGTTATAACAGGCAGAATGGATAAAATCTGGTTTGTAGATTGTAAACAGAAAGCGGTTTGTTTGAATTCAAACTTTGTATTCATGTGCTTACATAACACCTTGCAATGCAAAGGCACTACTTGCTTATTGTTCATTATACATTGACACCCTTCTGCTTCCTTACAGCTGGCATGGAGGAAATTAAACTTCCAGTGCCAGAAGGGTTGGACGCTTTAGCTGTTGTAAGTACTCACTCCTTGACAGTGTTGAATTTCCATTGAAATATAGATAAATTAATGTAAGATATCATTTTGCTGATACGCTTTTCAGAAAACTAAGAGATTAGCAATATCTAGTCAACCTGAGACAAATGGTTAGAAAATTACTGATCATTGAATTTCCATAATAAAATTGCCAACTCGGTCTCTGATTTAAATTGATACTCTGCCAATATAGGAACTTTTCAACCTATGCCCCCACCATCAACTCCATGGTTTGCTACAAAATCTGGGAGCAAGGTATTATGGGTTCTTTTTTCCATTTTTGAGCATTAA

mRNA sequence

ATGCAGCTAATTTCTTTAGCACAAGCAGGGTATGACCTGGACTCAGATATCCTCAAGAACGCAGCTGGCATGGAGGAAATTAAACTTCCAGTGCCAGAAGGGTTGGACGCTTTAGCTGTTAAAACTAAGAGATTAGCAATATCTAGTCAACCTGAGACAAATGGAACTTTTCAACCTATGCCCCCACCATCAACTCCATGGTTTGCTACAAAATCTGGGAGCAAGGTATTATGGGTTCTTTTTTCCATTTTTGAGCATTAA

Coding sequence (CDS)

ATGCAGCTAATTTCTTTAGCACAAGCAGGGTATGACCTGGACTCAGATATCCTCAAGAACGCAGCTGGCATGGAGGAAATTAAACTTCCAGTGCCAGAAGGGTTGGACGCTTTAGCTGTTAAAACTAAGAGATTAGCAATATCTAGTCAACCTGAGACAAATGGAACTTTTCAACCTATGCCCCCACCATCAACTCCATGGTTTGCTACAAAATCTGGGAGCAAGGTATTATGGGTTCTTTTTTCCATTTTTGAGCATTAA

Protein sequence

MQLISLAQAGYDLDSDILKNAAGMEEIKLPVPEGLDALAVKTKRLAISSQPETNGTFQPMPPPSTPWFATKSGSKVLWVLFSIFEH*

Homology

[Close]

BLAST of Csa1G042770 vs. Swiss-Prot
Match: EHD2_ARATH (EH domain-containing protein 2 OS=Arabidopsis thaliana GN=EHD2 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.4e-08
Identity = 29/72 (40.28%), Postives = 42/72 (58.33%), Query Frame = 1


Query: 1   MQLISLAQAGYDLDSDILKNAAGMEEIKLPVPEGLDALAVKTKRLAISSQPETNGTFQPM 60
           M+L+SLAQ G+++ SD+LK +  M+ ++LPV EGL+ +  K K    +   E N   +P 
Sbjct: 78  MKLVSLAQEGHEITSDLLKGSIDMKSVELPVLEGLENVVSKQKVSKTNVDVEDNVVTKPQ 137

Query: 61  PPPSTPWFATKS 73
               TPWF +KS
Sbjct: 138 VTAKTPWFKSKS 149

[Close]

BLAST of Csa1G042770 vs. Swiss-Prot
Match: EHD1_ARATH (EH domain-containing protein 1 OS=Arabidopsis thaliana GN=EHD1 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.7e-06
Identity = 27/76 (35.53%), Postives = 39/76 (51.32%), Query Frame = 1


Query: 1   MQLISLAQAGYDLDSDILKNAAGMEEIKLPVPEGLDALAVKTKRLAISSQPETNGTFQPM 60
           MQL+SLAQ G+++  ++L +    + I  P  EGL  L  K K  + SS P  NG+    
Sbjct: 77  MQLVSLAQTGHEISHEVLISDVDFKNINPPTMEGLGVLMAKKKHSSKSSDPNMNGSPAAD 136

Query: 61  PPPSTPWFATKSGSKV 77
              +  WF++KS  K+
Sbjct: 137 TSLTAHWFSSKSSKKI 152

[Close]

BLAST of Csa1G042770 vs. TrEMBL
Match: A0A0A0LQH1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042770 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 3.3e-41
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MQLISLAQAGYDLDSDILKNAAGMEEIKLPVPEGLDALAVKTKRLAISSQPETNGTFQPM 60
          MQLISLAQAGYDLDSDILKNAAGMEEIKLPVPEGLDALAVKTKRLAISSQPETNGTFQPM
Sbjct: 1  MQLISLAQAGYDLDSDILKNAAGMEEIKLPVPEGLDALAVKTKRLAISSQPETNGTFQPM 60

Query: 61 PPPSTPWFATKSGSKVLWVLFSIFEH 87
          PPPSTPWFATKSGSKVLWVLFSIFEH
Sbjct: 61 PPPSTPWFATKSGSKVLWVLFSIFEH 86

[Close]

BLAST of Csa1G042770 vs. TrEMBL
Match: A0A061GI53_THECC (EPS15 domain 2 isoform 1 OS=Theobroma cacao GN=TCM_030332 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 7.8e-14
Identity = 41/75 (54.67%), Postives = 51/75 (68.00%), Query Frame = 1


Query: 1   MQLISLAQAGYDLDSDILKNAAGMEEIKLPVPEGLDALAVKTKRLAISSQPETNGTFQPM 60
           MQL+SLAQAG +L SD+LK++   E I LP+ EGLDALAVK+K    + +PE NGT  P 
Sbjct: 77  MQLVSLAQAGNELTSDVLKSSVDAENISLPIMEGLDALAVKSKDSTTNGEPEMNGTTHPQ 136

Query: 61  PPPSTPWFATKSGSK 76
            P S  WF +KS  K
Sbjct: 137 VPTSAKWFTSKSARK 151

[Close]

BLAST of Csa1G042770 vs. TrEMBL
Match: A0A061GP02_THECC (EPS15 domain 2 isoform 3 OS=Theobroma cacao GN=TCM_030332 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 7.8e-14
Identity = 41/75 (54.67%), Postives = 51/75 (68.00%), Query Frame = 1


Query: 1   MQLISLAQAGYDLDSDILKNAAGMEEIKLPVPEGLDALAVKTKRLAISSQPETNGTFQPM 60
           MQL+SLAQAG +L SD+LK++   E I LP+ EGLDALAVK+K    + +PE NGT  P 
Sbjct: 77  MQLVSLAQAGNELTSDVLKSSVDAENISLPIMEGLDALAVKSKDSTTNGEPEMNGTTHPQ 136

Query: 61  PPPSTPWFATKSGSK 76
            P S  WF +KS  K
Sbjct: 137 VPTSAKWFTSKSARK 151

[Close]

BLAST of Csa1G042770 vs. TrEMBL
Match: A0A061GH01_THECC (EPS15 domain 2 isoform 5 OS=Theobroma cacao GN=TCM_030332 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 7.8e-14
Identity = 41/75 (54.67%), Postives = 51/75 (68.00%), Query Frame = 1


Query: 1   MQLISLAQAGYDLDSDILKNAAGMEEIKLPVPEGLDALAVKTKRLAISSQPETNGTFQPM 60
           MQL+SLAQAG +L SD+LK++   E I LP+ EGLDALAVK+K    + +PE NGT  P 
Sbjct: 77  MQLVSLAQAGNELTSDVLKSSVDAENISLPIMEGLDALAVKSKDSTTNGEPEMNGTTHPQ 136

Query: 61  PPPSTPWFATKSGSK 76
            P S  WF +KS  K
Sbjct: 137 VPTSAKWFTSKSARK 151

[Close]

BLAST of Csa1G042770 vs. TrEMBL
Match: A0A061GG55_THECC (EPS15 domain 2 isoform 4 OS=Theobroma cacao GN=TCM_030332 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 7.8e-14
Identity = 41/75 (54.67%), Postives = 51/75 (68.00%), Query Frame = 1


Query: 1   MQLISLAQAGYDLDSDILKNAAGMEEIKLPVPEGLDALAVKTKRLAISSQPETNGTFQPM 60
           MQL+SLAQAG +L SD+LK++   E I LP+ EGLDALAVK+K    + +PE NGT  P 
Sbjct: 77  MQLVSLAQAGNELTSDVLKSSVDAENISLPIMEGLDALAVKSKDSTTNGEPEMNGTTHPQ 136

Query: 61  PPPSTPWFATKSGSK 76
            P S  WF +KS  K
Sbjct: 137 VPTSAKWFTSKSARK 151

[Close]

BLAST of Csa1G042770 vs. TAIR10
Match: AT4G05520.1 (AT4G05520.1 EPS15 homology domain 2)

HSP 1 Score: 59.3 bits (142), Expect = 1.4e-09
Identity = 29/72 (40.28%), Postives = 42/72 (58.33%), Query Frame = 1


Query: 1   MQLISLAQAGYDLDSDILKNAAGMEEIKLPVPEGLDALAVKTKRLAISSQPETNGTFQPM 60
           M+L+SLAQ G+++ SD+LK +  M+ ++LPV EGL+ +  K K    +   E N   +P 
Sbjct: 78  MKLVSLAQEGHEITSDLLKGSIDMKSVELPVLEGLENVVSKQKVSKTNVDVEDNVVTKPQ 137

Query: 61  PPPSTPWFATKS 73
               TPWF +KS
Sbjct: 138 VTAKTPWFKSKS 149

[Close]

BLAST of Csa1G042770 vs. TAIR10
Match: AT3G20290.1 (AT3G20290.1 EPS15 homology domain 1)

HSP 1 Score: 53.1 bits (126), Expect = 9.7e-08
Identity = 27/76 (35.53%), Postives = 39/76 (51.32%), Query Frame = 1


Query: 1   MQLISLAQAGYDLDSDILKNAAGMEEIKLPVPEGLDALAVKTKRLAISSQPETNGTFQPM 60
           MQL+SLAQ G+++  ++L +    + I  P  EGL  L  K K  + SS P  NG+    
Sbjct: 77  MQLVSLAQTGHEISHEVLISDVDFKNINPPTMEGLGVLMAKKKHSSKSSDPNMNGSPAAD 136

Query: 61  PPPSTPWFATKSGSKV 77
              +  WF++KS  K+
Sbjct: 137 TSLTAHWFSSKSSKKI 152

[Close]

BLAST of Csa1G042770 vs. NCBI nr
Match: gi|700209074|gb|KGN64170.1| (hypothetical protein Csa_1G042770 [Cucumis sativus])

HSP 1 Score: 175.3 bits (443), Expect = 4.8e-41
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MQLISLAQAGYDLDSDILKNAAGMEEIKLPVPEGLDALAVKTKRLAISSQPETNGTFQPM 60
          MQLISLAQAGYDLDSDILKNAAGMEEIKLPVPEGLDALAVKTKRLAISSQPETNGTFQPM
Sbjct: 1  MQLISLAQAGYDLDSDILKNAAGMEEIKLPVPEGLDALAVKTKRLAISSQPETNGTFQPM 60

Query: 61 PPPSTPWFATKSGSKVLWVLFSIFEH 87
          PPPSTPWFATKSGSKVLWVLFSIFEH
Sbjct: 61 PPPSTPWFATKSGSKVLWVLFSIFEH 86

[Close]

BLAST of Csa1G042770 vs. NCBI nr
Match: gi|778664443|ref|XP_004145425.2| (PREDICTED: EH domain-containing protein 1 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 1.5e-31
Identity = 72/76 (94.74%), Postives = 73/76 (96.05%), Query Frame = 1


Query: 1   MQLISLAQAGYDLDSDILKNAAGMEEIKLPVPEGLDALAVKTKRLAISSQPETNGTFQPM 60
           MQLISLAQAGYDLDSDILK AAGMEEIKLPV EGLDALAVKTKRLAISSQ ETNGTFQPM
Sbjct: 77  MQLISLAQAGYDLDSDILKKAAGMEEIKLPVLEGLDALAVKTKRLAISSQHETNGTFQPM 136

Query: 61  PPPSTPWFATKSGSKV 77
           PPPSTPWFATKSGSK+
Sbjct: 137 PPPSTPWFATKSGSKI 152

[Close]

BLAST of Csa1G042770 vs. NCBI nr
Match: gi|659118166|ref|XP_008458980.1| (PREDICTED: EH domain-containing protein 1 [Cucumis melo])

HSP 1 Score: 140.2 bits (352), Expect = 1.7e-30
Identity = 69/76 (90.79%), Postives = 73/76 (96.05%), Query Frame = 1


Query: 1   MQLISLAQAGYDLDSDILKNAAGMEEIKLPVPEGLDALAVKTKRLAISSQPETNGTFQPM 60
           MQLISLAQAGYDLDSDILK AAGMEEIKLPV EGLDALAVK+KRLA+SSQ ETNGTFQPM
Sbjct: 77  MQLISLAQAGYDLDSDILKKAAGMEEIKLPVLEGLDALAVKSKRLAVSSQHETNGTFQPM 136

Query: 61  PPPSTPWFATKSGSKV 77
           PPPSTPWFA+KSGSK+
Sbjct: 137 PPPSTPWFASKSGSKI 152

[Close]

BLAST of Csa1G042770 vs. NCBI nr
Match: gi|1012107328|ref|XP_015959030.1| (PREDICTED: EH domain-containing protein 2-like [Arachis duranensis])

HSP 1 Score: 88.2 bits (217), Expect = 7.7e-15
Identity = 44/74 (59.46%), Postives = 51/74 (68.92%), Query Frame = 1


Query: 1   MQLISLAQAGYDLDSDILKNAAGMEEIKLPVPEGLDALAVKTKRLAISSQPETNGTFQPM 60
           MQL+SLAQAGY+L+SDILK     E +K PV EGL+ L  KTKRL I+S PE NG  QP 
Sbjct: 69  MQLVSLAQAGYELNSDILKTEIDKENVKPPVMEGLEDLVAKTKRLIINSPPEINGPAQPQ 128

Query: 61  PPPSTPWFATKSGS 75
             P  PWF +KS S
Sbjct: 129 SIPKNPWFTSKSKS 142

[Close]

BLAST of Csa1G042770 vs. NCBI nr
Match: gi|1021508309|ref|XP_016197511.1| (PREDICTED: EH domain-containing protein 2-like [Arachis ipaensis])

HSP 1 Score: 87.0 bits (214), Expect = 1.7e-14
Identity = 44/74 (59.46%), Postives = 51/74 (68.92%), Query Frame = 1


Query: 1   MQLISLAQAGYDLDSDILKNAAGMEEIKLPVPEGLDALAVKTKRLAISSQPETNGTFQPM 60
           MQL+SLAQAGY+L+SDILK     E +K PV EGL+ L  KTKRL I+S PE NG  QP 
Sbjct: 69  MQLVSLAQAGYELNSDILKIEIDKENVKPPVMEGLEDLVAKTKRLIINSPPEINGPAQPQ 128

Query: 61  PPPSTPWFATKSGS 75
             P  PWF +KS S
Sbjct: 129 SIPKNPWFTSKSKS 142

The following BLAST results are available for this feature:

BLAST of Csa1G042770 vs. Swiss-Prot


Match Name	E-value	Identity	Description
EHD2_ARATH	2.4e-08	40.28	EH domain-containing protein 2 OS=Arabidopsis thaliana GN=EHD2 PE=1 SV=1	[more]
EHD1_ARATH	1.7e-06	35.53	EH domain-containing protein 1 OS=Arabidopsis thaliana GN=EHD1 PE=1 SV=1	[more]

BLAST of Csa1G042770 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQH1_CUCSA	3.3e-41	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042770 PE=4 SV=1	[more]
A0A061GI53_THECC	7.8e-14	54.67	EPS15 domain 2 isoform 1 OS=Theobroma cacao GN=TCM_030332 PE=3 SV=1	[more]
A0A061GP02_THECC	7.8e-14	54.67	EPS15 domain 2 isoform 3 OS=Theobroma cacao GN=TCM_030332 PE=3 SV=1	[more]
A0A061GH01_THECC	7.8e-14	54.67	EPS15 domain 2 isoform 5 OS=Theobroma cacao GN=TCM_030332 PE=3 SV=1	[more]
A0A061GG55_THECC	7.8e-14	54.67	EPS15 domain 2 isoform 4 OS=Theobroma cacao GN=TCM_030332 PE=3 SV=1	[more]

BLAST of Csa1G042770 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G05520.1	1.4e-09	40.28	EPS15 homology domain 2	[more]
AT3G20290.1	9.7e-08	35.53	EPS15 homology domain 1	[more]

BLAST of Csa1G042770 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209074\|gb\|KGN64170.1\|	4.8e-41	100.00	hypothetical protein Csa_1G042770 [Cucumis sativus]	[more]
gi\|778664443\|ref\|XP_004145425.2\|	1.5e-31	94.74	PREDICTED: EH domain-containing protein 1 [Cucumis sativus]	[more]
gi\|659118166\|ref\|XP_008458980.1\|	1.7e-30	90.79	PREDICTED: EH domain-containing protein 1 [Cucumis melo]	[more]
gi\|1012107328\|ref\|XP_015959030.1\|	7.7e-15	59.46	PREDICTED: EH domain-containing protein 2-like [Arachis duranensis]	[more]
gi\|1021508309\|ref\|XP_016197511.1\|	1.7e-14	59.46	PREDICTED: EH domain-containing protein 2-like [Arachis ipaensis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0044464	cell part
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0043167	ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G042770.1	Csa1G042770.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G042770	CSPI01G07170	Wild cucumber (PI 183967)	cpicuB000
Csa1G042770	CsGy1G007010	Cucumber (Gy14) v2	cgybcuB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G042770	Silver-seed gourd	carcuB0415
Csa1G042770	Silver-seed gourd	carcuB0523
Csa1G042770	Silver-seed gourd	carcuB0623
Csa1G042770	Silver-seed gourd	carcuB0802
Csa1G042770	Watermelon (97103) v2	cuwmbB054
Csa1G042770	Watermelon (97103) v2	cuwmbB080
Csa1G042770	Wax gourd	cuwgoB028
Csa1G042770	Wax gourd	cuwgoB093
Csa1G042770	Cucumber (Chinese Long) v2	cucuB000
Csa1G042770	Cucumber (Gy14) v1	cgycuB139
Csa1G042770	Cucumber (Gy14) v1	cgycuB159
Csa1G042770	Cucurbita maxima (Rimu)	cmacuB056
Csa1G042770	Cucurbita maxima (Rimu)	cmacuB088
Csa1G042770	Cucurbita maxima (Rimu)	cmacuB217
Csa1G042770	Cucurbita maxima (Rimu)	cmacuB390
Csa1G042770	Cucurbita moschata (Rifu)	cmocuB046
Csa1G042770	Cucurbita moschata (Rifu)	cmocuB077
Csa1G042770	Cucurbita moschata (Rifu)	cmocuB202
Csa1G042770	Cucurbita moschata (Rifu)	cmocuB380
Csa1G042770	Melon (DHL92) v3.5.1	cumeB027
Csa1G042770	Melon (DHL92) v3.5.1	cumeB056
Csa1G042770	Watermelon (Charleston Gray)	cuwcgB057
Csa1G042770	Watermelon (Charleston Gray)	cuwcgB083
Csa1G042770	Watermelon (97103) v1	cuwmB062
Csa1G042770	Watermelon (97103) v1	cuwmB096
Csa1G042770	Cucurbita pepo (Zucchini)	cpecuB029
Csa1G042770	Cucurbita pepo (Zucchini)	cpecuB369
Csa1G042770	Cucurbita pepo (Zucchini)	cpecuB505
Csa1G042770	Cucurbita pepo (Zucchini)	cpecuB655
Csa1G042770	Bottle gourd (USVL1VR-Ls)	culsiB022
Csa1G042770	Bottle gourd (USVL1VR-Ls)	culsiB072
Csa1G042770	Cucumber (Gy14) v2	cgybcuB004
Csa1G042770	Melon (DHL92) v3.6.1	cumedB022
Csa1G042770	Melon (DHL92) v3.6.1	cumedB048