Csa1G042340 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G042340
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionTranscription factor; contains IPR011598 (Myc-type, basic helix-loop-helix (bHLH) domain)
LocationChr1 : 4258154 .. 4259785 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGGTTTTGAAAAAAAAAGTTTTAGTTCAAAACATTCCATGGCTGACTTCACTCCGAACTTTCAAAGCTTAAAACCATCATCTTTCCCTCTAATGGATATAGATCCCAACCAAAACCCAAATCTTAATTTTCTTGACAACATTCCAATTTTGTTCAGTGAAAGTTTCTTTAACAATCAAACTGCTGTTCCTTCTCCTAGATTCCTAGAAAATTGGGGAGAAAATTTCCAAGGGATTTTCTCTCATCATCAAGCCAATCAGATCATAACTCCCACTTCTTCTCCTGTTTTTGAGCCTAAAAATCTATTTGGAAATGACCTCCATGGAAGCAAGAAAAGAAAGCTTGAAAATAATGATGCATATGAAAGCAGCTCTGGCAACTCTACCCCTCAAGTTTCTGAAAATGGGATCAACACCAAAAATGTAAACAAAAAAAACTCTCATCCTTTTTCGTTTTTCTATTCTCAAATTACAAAACTTATGGAAATGTTCTTACTTCCATGTATTATTTTCATGTCTGCAGAACAATGGAAAAGAGAAGCGGTCGAAAAAAGGCGACACAAACGACGGCGAAAAACCGAGGGAAGTTGTTCATGTTAGAGCTAGAAGAGGTCAAGCAACAGACAGTCATAGTGTAGCAGAAAGGGTACGTAACTTTGATTTGAAGAACATAAATTTAGACCTTTTCTTTTCTTTTACAAATGTATTTATGGAGATACAAACATTACTGTTATTCTCAAACAGATAAGAAGAGGCAAAATCAATGAAAGATTGAGATGTTTACAAGACATTGTTCCTGGATGTTACAAGGTAAATGAAAATTGAAGTTGTTTAGCAAAATTTTTCTAAAAAAACCCTTAAATGACAACAAACATATAATTACATAATTTACATTGTGTTTGTGTAGACAATGGGAATGGCAGTGATGTTGGATGAGATAATCAATTATGTGCAATCTTTGCAGAATCAAGTTGAGGTAATAAAGTTTTAAGCATTATTTGGGAATTTGAAAAACAACAACACAAATAATGATTTTTTGTTCTTGTTTTTGTACAGTTTCTTTCTATGAAACTCACAGCTGCAAGCTCCTATCATGACTTCAACTCTGACTCAGATGCTGAAGACAAACTGAAGGTACATTATTATACACTAAATTTCTTTCAAATGTTAAATTACAAAACCAACCTTAACTTTCCCTCTTTGTTTCGATAATACCCTTGTTCGAACTTTTGACAAACATTAATTTAGATCATTATCACACATTTATAATAAGATTTGGATGTGTAATAATGTGAGTAAACATGATGAATGTTTATAAGATTTGTGGTTAATACTTAGAATTTGAATGGAAATTATTAAATGGATCACAGGGAAAGGAAATAAGAGAAGGAAATGGAGGAATATCAATGATTGGATCATCAACTCAACTTGGTCCCTTTGACTTGTGCTTTGGTTCATATTCAACATTGCCATTCAACACCATATGATCACTATAATATGATCAACAACAACATTAATTAGCTAATAGTTCCTATATTAATTATTCTTCTTCATTTTTCCATCACCAAAAATTTGTTCCCCACTTTAATTTTTAAGCCATACTTATAAATTTATCTATCCTTGTAATCAACCC

mRNA sequence

ATGGCTGACTTCACTCCGAACTTTCAAAGCTTAAAACCATCATCTTTCCCTCTAATGGATATAGATCCCAACCAAAACCCAAATCTTAATTTTCTTGACAACATTCCAATTTTGTTCAGTGAAAGTTTCTTTAACAATCAAACTGCTGTTCCTTCTCCTAGATTCCTAGAAAATTGGGGAGAAAATTTCCAAGGGATTTTCTCTCATCATCAAGCCAATCAGATCATAACTCCCACTTCTTCTCCTGTTTTTGAGCCTAAAAATCTATTTGGAAATGACCTCCATGGAAGCAAGAAAAGAAAGCTTGAAAATAATGATGCATATGAAAGCAGCTCTGGCAACTCTACCCCTCAAGTTTCTGAAAATGGGATCAACACCAAAAATAACAATGGAAAAGAGAAGCGGTCGAAAAAAGGCGACACAAACGACGGCGAAAAACCGAGGGAAGTTGTTCATGTTAGAGCTAGAAGAGGTCAAGCAACAGACAGTCATAGTGTAGCAGAAAGGATAAGAAGAGGCAAAATCAATGAAAGATTGAGATGTTTACAAGACATTGTTCCTGGATGTTACAAGACAATGGGAATGGCAGTGATGTTGGATGAGATAATCAATTATGTGCAATCTTTGCAGAATCAAGTTGAGTTTCTTTCTATGAAACTCACAGCTGCAAGCTCCTATCATGACTTCAACTCTGACTCAGATGCTGAAGACAAACTGAAGGGAAAGGAAATAAGAGAAGGAAATGGAGGAATATCAATGATTGGATCATCAACTCAACTTGGTCCCTTTGACTTGTGCTTTGGTTCATATTCAACATTGCCATTCAACACCATATGA

Coding sequence (CDS)

ATGGCTGACTTCACTCCGAACTTTCAAAGCTTAAAACCATCATCTTTCCCTCTAATGGATATAGATCCCAACCAAAACCCAAATCTTAATTTTCTTGACAACATTCCAATTTTGTTCAGTGAAAGTTTCTTTAACAATCAAACTGCTGTTCCTTCTCCTAGATTCCTAGAAAATTGGGGAGAAAATTTCCAAGGGATTTTCTCTCATCATCAAGCCAATCAGATCATAACTCCCACTTCTTCTCCTGTTTTTGAGCCTAAAAATCTATTTGGAAATGACCTCCATGGAAGCAAGAAAAGAAAGCTTGAAAATAATGATGCATATGAAAGCAGCTCTGGCAACTCTACCCCTCAAGTTTCTGAAAATGGGATCAACACCAAAAATAACAATGGAAAAGAGAAGCGGTCGAAAAAAGGCGACACAAACGACGGCGAAAAACCGAGGGAAGTTGTTCATGTTAGAGCTAGAAGAGGTCAAGCAACAGACAGTCATAGTGTAGCAGAAAGGATAAGAAGAGGCAAAATCAATGAAAGATTGAGATGTTTACAAGACATTGTTCCTGGATGTTACAAGACAATGGGAATGGCAGTGATGTTGGATGAGATAATCAATTATGTGCAATCTTTGCAGAATCAAGTTGAGTTTCTTTCTATGAAACTCACAGCTGCAAGCTCCTATCATGACTTCAACTCTGACTCAGATGCTGAAGACAAACTGAAGGGAAAGGAAATAAGAGAAGGAAATGGAGGAATATCAATGATTGGATCATCAACTCAACTTGGTCCCTTTGACTTGTGCTTTGGTTCATATTCAACATTGCCATTCAACACCATATGA

Protein sequence

MADFTPNFQSLKPSSFPLMDIDPNQNPNLNFLDNIPILFSESFFNNQTAVPSPRFLENWGENFQGIFSHHQANQIITPTSSPVFEPKNLFGNDLHGSKKRKLENNDAYESSSGNSTPQVSENGINTKNNNGKEKRSKKGDTNDGEKPREVVHVRARRGQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSYHDFNSDSDAEDKLKGKEIREGNGGISMIGSSTQLGPFDLCFGSYSTLPFNTI*
Homology
[Close]
BLAST of Csa1G042340 vs. Swiss-Prot
Match: BEE3_ARATH (Transcription factor BEE 3 OS=Arabidopsis thaliana GN=BEE3 PE=2 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 5.6e-51
Identity = 136/281 (48.40%), Postives = 166/281 (59.07%), Query Frame = 1 

Query: 1   MADFTPNFQSLKPSSFPLMDIDPNQNPNLNFLDNIPILFSES----FFNNQTAVPSP-RF 60
           MA+ + +FQ+      P+  +    N  L+     P  FS S    FF+NQ     P + 
Sbjct: 1   MANLSSDFQTFTMDD-PIRQLAELSN-TLHHFQTFPPPFSSSLDSLFFHNQFPDHFPGKS 60

Query: 61  LENWGENFQGIFSHHQANQIITPTSSPVFEPKNLFGNDLHGS----KKRK-------LEN 120
           LEN   NF      HQ           +F P N+  N+   S    KKRK          
Sbjct: 61  LEN---NF------HQG----------IFFPSNIQNNEESSSQFDTKKRKSLMEAVSTSE 120

Query: 121 NDAYESSSGNSTPQVSENG-INTKNNNGKEKRSKKGDTNDGEKPREVVHVRARRGQATDS 180
           N   + +   S+ QVS NG I+TKNN+ +  R K+    + EK REVVHVRARRGQATDS
Sbjct: 121 NSVSDQTLSTSSAQVSINGNISTKNNSSR--RGKRSKNREEEKEREVVHVRARRGQATDS 180

Query: 181 HSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAA 240
           HS+AER+RRGKINERL+CLQDIVPGCYKTMGMA MLDEIINYVQSLQNQVEFLSMKLTAA
Sbjct: 181 HSIAERVRRGKINERLKCLQDIVPGCYKTMGMATMLDEIINYVQSLQNQVEFLSMKLTAA 240

Query: 241 SSYHDFNSDSDAEDKLKGKEIRE------GNGGISMIGSST 259
           SSY+DFNS++DA + ++  + RE      G  G S+  SS+
Sbjct: 241 SSYYDFNSETDAVESMQKAKAREAVEMGQGRDGSSVFHSSS 258

[Close]
BLAST of Csa1G042340 vs. Swiss-Prot
Match: BEE1_ARATH (Transcription factor BEE 1 OS=Arabidopsis thaliana GN=BEE1 PE=2 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.7e-47
Identity = 115/231 (49.78%), Postives = 137/231 (59.31%), Query Frame = 1 

Query: 24  NQNPNLNFLDNIPILFSESFFNNQTAVPSPRFLENWGENFQGIFSHHQANQII-----TP 83
           N N NL+F               QT  PS   LE+       +F HH   Q++     +P
Sbjct: 30  NNNSNLHF---------------QTFHPSSTSLES-------LFLHHHQQQLLHFPGNSP 89

Query: 84  TSSPVFEPKNLFGNDLHGSKKRKLENNDAYESSSGNSTPQVSENGINTKNNNG---KEKR 143
            SS  F   + F +  H       +      + S + T  VS+N        G   + KR
Sbjct: 90  DSSNNFSSTSSFLHSDHNIVDETKKRKALLPTLSSSETSGVSDNTNVIATETGSLRRGKR 149

Query: 144 SKKGDTNDGEKPREVVHVRARRGQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGM 203
            KK    + EK REVVHVRARRGQATDSHS+AER+RRGKINERLRCLQD+VPGCYK MGM
Sbjct: 150 LKKKKEEEDEKEREVVHVRARRGQATDSHSLAERVRRGKINERLRCLQDMVPGCYKAMGM 209

Query: 204 AVMLDEIINYVQSLQNQVEFLSMKLTAASSYHDFNSDSDAEDKLKGKEIRE 247
           A MLDEIINYVQSLQNQVEFLSMKLTAASS++DFNS++DA D ++  + RE
Sbjct: 210 ATMLDEIINYVQSLQNQVEFLSMKLTAASSFYDFNSETDAVDSMQRAKARE 238

[Close]
BLAST of Csa1G042340 vs. Swiss-Prot
Match: BH075_ARATH (Transcription factor bHLH75 OS=Arabidopsis thaliana GN=BHLH75 PE=2 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 7.2e-38
Identity = 93/189 (49.21%), Postives = 119/189 (62.96%), Query Frame = 1 

Query: 88  NLFGNDLHGSKKRKLENNDAYESSSGNSTPQVSENGINTKNNNGKEKRSKKGDTNDGEKP 147
           + F N LHG+ +RK           GN      E+G   +    +E+ +  GD  + +KP
Sbjct: 56  HFFPNLLHGNTRRK-----------GNK----EESGSKRRRKRSEEEEAMNGD--ETQKP 115

Query: 148 REVVHVRARRGQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQ 207
           ++VVHVRA+RGQATDSHS+AER+RR KINERL+CLQD+VPGCYK MGMAVMLD II+YV+
Sbjct: 116 KDVVHVRAKRGQATDSHSLAERVRREKINERLKCLQDLVPGCYKAMGMAVMLDVIIDYVR 175

Query: 208 SLQNQVEFLSMKLTAASSYHDFNS-DSDAEDKLKGKEIREGNGGISMIGSSTQLGPFDLC 267
           SLQNQ+EFLSMKL+AAS+ +D NS D +  D  +G  I        ++  S    P +  
Sbjct: 176 SLQNQIEFLSMKLSAASACYDLNSLDIEPTDIFQGGNIHSAAEMERILRESVGTQPPNFS 223

Query: 268 FGSYSTLPF 276
               STLPF
Sbjct: 236 ----STLPF 223

[Close]
BLAST of Csa1G042340 vs. Swiss-Prot
Match: BH062_ARATH (Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.0e-31
Identity = 88/203 (43.35%), Postives = 119/203 (58.62%), Query Frame = 1 

Query: 39  FSESFFNNQTAVPSPRFLENWGENFQGIFSHHQANQIITPTSSPVFEP--KNLFGNDLHG 98
           F    FN++T  P P        N   I ++ +  ++   +SSPVF+P   ++   +  G
Sbjct: 151 FGSRSFNSRTNSPFPI------NNEPPITTNEKMPRV---SSSPVFKPLASHVPAGESSG 210

Query: 99  SKKRKLENNDAYESSSGNSTPQVSENGINTKNNNGKEKRSKKGDTNDGEKPREV------ 158
              RK +       S  NS   VS +    +  +   KR KK + N G+K + +      
Sbjct: 211 ELSRKRKTK-----SKQNSPSAVSSSKEIEEKEDSDPKRCKKSEEN-GDKTKSIDPYKDY 270

Query: 159 VHVRARRGQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQ 218
           +HVRARRGQATDSHS+AER+RR KI+ER++ LQD+VPGC K  G A+MLDEIINYVQSLQ
Sbjct: 271 IHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQ 330

Query: 219 NQVEFLSMKLTAASSYHDFNSDS 234
            QVEFLSMKL++ ++  DFN D+
Sbjct: 331 RQVEFLSMKLSSVNTRLDFNMDA 338

[Close]
BLAST of Csa1G042340 vs. Swiss-Prot
Match: BH077_ARATH (Transcription factor bHLH77 OS=Arabidopsis thaliana GN=BHLH77 PE=1 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 6.5e-31
Identity = 73/153 (47.71%), Postives = 92/153 (60.13%), Query Frame = 1 

Query: 91  GNDLHGSKKRKLENNDAYESSSGNSTPQVSENGINTKNNNGKEKRSKKGDTNDGEKPREV 150
           G +   S      N+     + G+   + S+  +   + NG EK   KGD  D  KP E 
Sbjct: 125 GKESPASSSLTASNSKVSGENGGSKGGKRSKQDVAGSSKNGVEKCDSKGDNKDDAKPPEA 184

Query: 151 ----VHVRARRGQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYV 210
               +HVRARRGQATDSHS+AER RR KI+ER+  LQD+VPGC +  G AVMLDEIINYV
Sbjct: 185 PKDYIHVRARRGQATDSHSLAERARREKISERMTLLQDLVPGCNRITGKAVMLDEIINYV 244

Query: 211 QSLQNQVEFLSMKLTAASSYHDFNSDSDAEDKL 240
           QSLQ QVEFLSMKL   +   +FN+++    ++
Sbjct: 245 QSLQRQVEFLSMKLATVNPRMEFNANASLSTEM 277

[Close]
BLAST of Csa1G042340 vs. TrEMBL
Match: A0A0A0LTN3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042340 PE=4 SV=1)

HSP 1 Score: 568.2 bits (1463), Expect = 5.7e-159
Identity = 278/278 (100.00%), Postives = 278/278 (100.00%), Query Frame = 1 

Query: 1   MADFTPNFQSLKPSSFPLMDIDPNQNPNLNFLDNIPILFSESFFNNQTAVPSPRFLENWG 60
           MADFTPNFQSLKPSSFPLMDIDPNQNPNLNFLDNIPILFSESFFNNQTAVPSPRFLENWG
Sbjct: 1   MADFTPNFQSLKPSSFPLMDIDPNQNPNLNFLDNIPILFSESFFNNQTAVPSPRFLENWG 60

Query: 61  ENFQGIFSHHQANQIITPTSSPVFEPKNLFGNDLHGSKKRKLENNDAYESSSGNSTPQVS 120
           ENFQGIFSHHQANQIITPTSSPVFEPKNLFGNDLHGSKKRKLENNDAYESSSGNSTPQVS
Sbjct: 61  ENFQGIFSHHQANQIITPTSSPVFEPKNLFGNDLHGSKKRKLENNDAYESSSGNSTPQVS 120

Query: 121 ENGINTKNNNGKEKRSKKGDTNDGEKPREVVHVRARRGQATDSHSVAERIRRGKINERLR 180
           ENGINTKNNNGKEKRSKKGDTNDGEKPREVVHVRARRGQATDSHSVAERIRRGKINERLR
Sbjct: 121 ENGINTKNNNGKEKRSKKGDTNDGEKPREVVHVRARRGQATDSHSVAERIRRGKINERLR 180

Query: 181 CLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSYHDFNSDSDAEDKLK 240
           CLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSYHDFNSDSDAEDKLK
Sbjct: 181 CLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSYHDFNSDSDAEDKLK 240

Query: 241 GKEIREGNGGISMIGSSTQLGPFDLCFGSYSTLPFNTI 279
           GKEIREGNGGISMIGSSTQLGPFDLCFGSYSTLPFNTI
Sbjct: 241 GKEIREGNGGISMIGSSTQLGPFDLCFGSYSTLPFNTI 278

[Close]
BLAST of Csa1G042340 vs. TrEMBL
Match: D7SJ01_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g03580 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 4.3e-66
Identity = 154/288 (53.47%), Postives = 185/288 (64.24%), Query Frame = 1 

Query: 1   MADFTPNFQSLKPSSFPLMDIDPNQN--------PNLNFLDNIPILFS--ESFFNNQTAV 60
           MADFT + Q  K SS+PL + DPN           N  F DN  + F   E+FF+ Q   
Sbjct: 1   MADFTADLQGFKTSSYPLFEADPNTGLISTQSTEQNQGFFDNPSLNFQALETFFSQQP-- 60

Query: 61  PSPRFLENWGENFQGIFSHHQANQIITPTSSPVFEPKNLFGNDLHGSKKRKLENNDAYES 120
             P F  N  E FQ               + P+ + +   G+ L  +KKRK    DA ES
Sbjct: 61  --PEFPGNLSEIFQ------------QKVAVPMAQAEVSAGDSLCENKKRKARV-DASES 120

Query: 121 SSGNSTPQVSENGINT-KNNNGKEKRSKKGDTNDGEKPREVVHVRARRGQATDSHSVAER 180
           SSGNS+    E+G+   KN++G+ KR+ K    + EKPREVVHVRARRGQATDSHS+AER
Sbjct: 121 SSGNSSTPACESGLKRGKNSSGRGKRAMKSIEKEDEKPREVVHVRARRGQATDSHSLAER 180

Query: 181 IRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSYHDF 240
           +RRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAAS Y+DF
Sbjct: 181 VRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASQYYDF 240

Query: 241 NSDSDAEDKLKGKEIREGNGGISMIGSSTQLGPFDLCFGSYSTLPFNT 278
           NSD+D  + ++  ++            STQ GP DL FGSYS+LP+NT
Sbjct: 241 NSDTDTLETIQRGKVHGEQ------PPSTQHGPIDLTFGSYSSLPYNT 265

[Close]
BLAST of Csa1G042340 vs. TrEMBL
Match: A0A061FU69_THECC (BR enhanced expression 1 OS=Theobroma cacao GN=TCM_012362 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 9.6e-66
Identity = 158/286 (55.24%), Postives = 189/286 (66.08%), Query Frame = 1 

Query: 1   MADFTPNFQSLKPSSFPLMDIDP-----NQ----------NPNLNFLDNIPILFSESFFN 60
           MADFT +FQS K  SF  +DIDP     NQ          N  LNF   +P   ++SFF+
Sbjct: 1   MADFTSDFQSFK-QSFSFLDIDPAMESLNQFAELSPGVIDNSALNFQSFLPFS-NDSFFS 60

Query: 61  NQTA-VPSPRFLENWGENFQGIFSHHQANQIITPTSSPVFEPKNLFGNDLHGSKKRKLEN 120
           NQ   +P      NWGEN  G F HH     +   + P    K  F    H SKKRK   
Sbjct: 61  NQAPEIPG----NNWGENLPG-FIHHSNQSSVVSVAQPTVTSKTEF----HESKKRKAL- 120

Query: 121 NDAYESSSGNST-PQVSENGINTKNNNGKEKRSKKGDTNDGEKPREVVHVRARRGQATDS 180
            D  ESSSGNS+ PQVSE+GI  +NN G+ KR++  +  + EKP+EVVHVRARRGQATDS
Sbjct: 121 -DVSESSSGNSSSPQVSESGIKRRNNPGRGKRARSNEKGE-EKPKEVVHVRARRGQATDS 180

Query: 181 HSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAA 240
           HS+AER+RRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAA
Sbjct: 181 HSLAERVRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAA 240

Query: 241 SSYHDFNSDSDAEDKLKGKEIREGNGGISMIGSSTQLGPFDLCFGS 270
           S+Y+DFNS+SDA +K++  + +E      ++ S   +G    CF S
Sbjct: 241 STYYDFNSESDAMEKMQRAKAQEAKELDRLMRSEGYVGGL-ACFHS 271

[Close]
BLAST of Csa1G042340 vs. TrEMBL
Match: B9I2L2_POPTR (Basic helix-loop-helix family protein OS=Populus trichocarpa GN=POPTR_0012s05210g PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 4.1e-64
Identity = 150/285 (52.63%), Postives = 188/285 (65.96%), Query Frame = 1 

Query: 1   MADFTPNFQSLKPSSFPLMDIDPNQ---------------NPNLNFLDNIPILFSESFFN 60
           MADFT + QS +P  FP +DIDP+                NP++N + +     S++FF+
Sbjct: 1   MADFTADLQSFRPP-FPFLDIDPSMVALSQFTEVSQAILDNPSVNNIHSFMPFTSDNFFS 60

Query: 61  NQTAVPSPRFLENWGENFQGIFSHHQANQIITPTSSPVFEPKNLFGNDLHGSKKRKLENN 120
           +Q    +P F  N  E F GIF  HQ +Q + P S P   P N   ++   SKKRK    
Sbjct: 61  HQ----APEFPGNLAEGFAGIF--HQNDQTVMPVSQPFTTPGN--ESEFQESKKRKAM-- 120

Query: 121 DAYESSSGNSTPQVSENGINTKNNNGKEKRSKKGDTNDGEKPREVVHVRARRGQATDSHS 180
           D  ESSS NS+PQVSE+G   +N N   +R K   +N+  KP++VVHVRARRGQATDSHS
Sbjct: 121 DVSESSSMNSSPQVSESGSKRRNVNSS-RRGKGVKSNEDGKPKDVVHVRARRGQATDSHS 180

Query: 181 VAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASS 240
           +AER+RRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAAS+
Sbjct: 181 LAERVRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAAST 240

Query: 241 YHDFNSDSDA----------EDKLKGKEIREGNGGISMIGSSTQL 261
           ++DFN+++DA          E K   + +REG+GG + I S+  L
Sbjct: 241 FYDFNAETDAIETMQRAKAQEAKELQRAMREGSGGFAHIHSTWSL 273

[Close]
BLAST of Csa1G042340 vs. TrEMBL
Match: V7CA67_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G094700g PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.9e-61
Identity = 145/282 (51.42%), Postives = 181/282 (64.18%), Query Frame = 1 

Query: 1   MADFTPNFQ--SLKPSSFPLMDIDPNQNPNLNFLDNIPILFSESFFNNQTAVP------- 60
           MA+FT N Q  S++PSSFP +DIDP+      F+     +   S       +P       
Sbjct: 1   MAEFTENLQLQSIRPSSFPFLDIDPSMELLNQFIGMNQHVIDNSNLTMHNLMPFSCDTFL 60

Query: 61  ---SPRFLENWGENFQGIFSHHQANQIITPTSSPVFEPKNLFGNDLHGSKKRKLENNDAY 120
               P F  N  ENF  +  H   N +  P S P+F+ +N     +H  KKRK  + D  
Sbjct: 61  GPQEPEFPGNLEENFPALVHHVNHNAL--PVSLPIFQAEN----KIHDGKKRK--SMDLP 120

Query: 121 ESSSGNSTPQVSENGINTKNNNGKEKRSKKGDTNDGEKPREVVHVRARRGQATDSHSVAE 180
           E+SS NSTP VSE+G   K+++G+ KR+K   T + EK +EVVHVRARRGQATDSHS+AE
Sbjct: 121 ETSSANSTPAVSESGSKRKHSSGRGKRAKSNVTEE-EKAKEVVHVRARRGQATDSHSLAE 180

Query: 181 RIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSYHD 240
           R+RRGKINE+LRCLQ+IVPGCYKTMGMAVMLDEIINYVQSLQ+QVEFLS+KLTAAS+++D
Sbjct: 181 RVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSLKLTAASTFYD 240

Query: 241 FNSDSDA----------EDKLKGKEIREGNGGISMIGSSTQL 261
           FNS++DA          E K  GK  REG GG+S    S  L
Sbjct: 241 FNSETDALETMQRARASEAKELGKYKREGYGGVSCFQPSWPL 273

[Close]
BLAST of Csa1G042340 vs. TAIR10
Match: AT1G73830.1 (AT1G73830.1 BR enhanced expression 3)

HSP 1 Score: 202.6 bits (514), Expect = 3.2e-52
Identity = 136/281 (48.40%), Postives = 166/281 (59.07%), Query Frame = 1 

Query: 1   MADFTPNFQSLKPSSFPLMDIDPNQNPNLNFLDNIPILFSES----FFNNQTAVPSP-RF 60
           MA+ + +FQ+      P+  +    N  L+     P  FS S    FF+NQ     P + 
Sbjct: 1   MANLSSDFQTFTMDD-PIRQLAELSN-TLHHFQTFPPPFSSSLDSLFFHNQFPDHFPGKS 60

Query: 61  LENWGENFQGIFSHHQANQIITPTSSPVFEPKNLFGNDLHGS----KKRK-------LEN 120
           LEN   NF      HQ           +F P N+  N+   S    KKRK          
Sbjct: 61  LEN---NF------HQG----------IFFPSNIQNNEESSSQFDTKKRKSLMEAVSTSE 120

Query: 121 NDAYESSSGNSTPQVSENG-INTKNNNGKEKRSKKGDTNDGEKPREVVHVRARRGQATDS 180
           N   + +   S+ QVS NG I+TKNN+ +  R K+    + EK REVVHVRARRGQATDS
Sbjct: 121 NSVSDQTLSTSSAQVSINGNISTKNNSSR--RGKRSKNREEEKEREVVHVRARRGQATDS 180

Query: 181 HSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAA 240
           HS+AER+RRGKINERL+CLQDIVPGCYKTMGMA MLDEIINYVQSLQNQVEFLSMKLTAA
Sbjct: 181 HSIAERVRRGKINERLKCLQDIVPGCYKTMGMATMLDEIINYVQSLQNQVEFLSMKLTAA 240

Query: 241 SSYHDFNSDSDAEDKLKGKEIRE------GNGGISMIGSST 259
           SSY+DFNS++DA + ++  + RE      G  G S+  SS+
Sbjct: 241 SSYYDFNSETDAVESMQKAKAREAVEMGQGRDGSSVFHSSS 258

[Close]
BLAST of Csa1G042340 vs. TAIR10
Match: AT1G18400.1 (AT1G18400.1 BR enhanced expression 1)

HSP 1 Score: 191.0 bits (484), Expect = 9.6e-49
Identity = 115/231 (49.78%), Postives = 137/231 (59.31%), Query Frame = 1 

Query: 24  NQNPNLNFLDNIPILFSESFFNNQTAVPSPRFLENWGENFQGIFSHHQANQII-----TP 83
           N N NL+F               QT  PS   LE+       +F HH   Q++     +P
Sbjct: 30  NNNSNLHF---------------QTFHPSSTSLES-------LFLHHHQQQLLHFPGNSP 89

Query: 84  TSSPVFEPKNLFGNDLHGSKKRKLENNDAYESSSGNSTPQVSENGINTKNNNG---KEKR 143
            SS  F   + F +  H       +      + S + T  VS+N        G   + KR
Sbjct: 90  DSSNNFSSTSSFLHSDHNIVDETKKRKALLPTLSSSETSGVSDNTNVIATETGSLRRGKR 149

Query: 144 SKKGDTNDGEKPREVVHVRARRGQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGM 203
            KK    + EK REVVHVRARRGQATDSHS+AER+RRGKINERLRCLQD+VPGCYK MGM
Sbjct: 150 LKKKKEEEDEKEREVVHVRARRGQATDSHSLAERVRRGKINERLRCLQDMVPGCYKAMGM 209

Query: 204 AVMLDEIINYVQSLQNQVEFLSMKLTAASSYHDFNSDSDAEDKLKGKEIRE 247
           A MLDEIINYVQSLQNQVEFLSMKLTAASS++DFNS++DA D ++  + RE
Sbjct: 210 ATMLDEIINYVQSLQNQVEFLSMKLTAASSFYDFNSETDAVDSMQRAKARE 238

[Close]
BLAST of Csa1G042340 vs. TAIR10
Match: AT1G25330.1 (AT1G25330.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 159.1 bits (401), Expect = 4.0e-39
Identity = 93/189 (49.21%), Postives = 119/189 (62.96%), Query Frame = 1 

Query: 88  NLFGNDLHGSKKRKLENNDAYESSSGNSTPQVSENGINTKNNNGKEKRSKKGDTNDGEKP 147
           + F N LHG+ +RK           GN      E+G   +    +E+ +  GD  + +KP
Sbjct: 56  HFFPNLLHGNTRRK-----------GNK----EESGSKRRRKRSEEEEAMNGD--ETQKP 115

Query: 148 REVVHVRARRGQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQ 207
           ++VVHVRA+RGQATDSHS+AER+RR KINERL+CLQD+VPGCYK MGMAVMLD II+YV+
Sbjct: 116 KDVVHVRAKRGQATDSHSLAERVRREKINERLKCLQDLVPGCYKAMGMAVMLDVIIDYVR 175

Query: 208 SLQNQVEFLSMKLTAASSYHDFNS-DSDAEDKLKGKEIREGNGGISMIGSSTQLGPFDLC 267
           SLQNQ+EFLSMKL+AAS+ +D NS D +  D  +G  I        ++  S    P +  
Sbjct: 176 SLQNQIEFLSMKLSAASACYDLNSLDIEPTDIFQGGNIHSAAEMERILRESVGTQPPNFS 223

Query: 268 FGSYSTLPF 276
               STLPF
Sbjct: 236 ----STLPF 223

[Close]
BLAST of Csa1G042340 vs. TAIR10
Match: AT3G07340.1 (AT3G07340.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 138.7 bits (348), Expect = 5.6e-33
Identity = 88/203 (43.35%), Postives = 119/203 (58.62%), Query Frame = 1 

Query: 39  FSESFFNNQTAVPSPRFLENWGENFQGIFSHHQANQIITPTSSPVFEP--KNLFGNDLHG 98
           F    FN++T  P P        N   I ++ +  ++   +SSPVF+P   ++   +  G
Sbjct: 151 FGSRSFNSRTNSPFPI------NNEPPITTNEKMPRV---SSSPVFKPLASHVPAGESSG 210

Query: 99  SKKRKLENNDAYESSSGNSTPQVSENGINTKNNNGKEKRSKKGDTNDGEKPREV------ 158
              RK +       S  NS   VS +    +  +   KR KK + N G+K + +      
Sbjct: 211 ELSRKRKTK-----SKQNSPSAVSSSKEIEEKEDSDPKRCKKSEEN-GDKTKSIDPYKDY 270

Query: 159 VHVRARRGQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQ 218
           +HVRARRGQATDSHS+AER+RR KI+ER++ LQD+VPGC K  G A+MLDEIINYVQSLQ
Sbjct: 271 IHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQ 330

Query: 219 NQVEFLSMKLTAASSYHDFNSDS 234
            QVEFLSMKL++ ++  DFN D+
Sbjct: 331 RQVEFLSMKLSSVNTRLDFNMDA 338

[Close]
BLAST of Csa1G042340 vs. TAIR10
Match: AT3G23690.1 (AT3G23690.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 136.0 bits (341), Expect = 3.7e-32
Identity = 73/153 (47.71%), Postives = 92/153 (60.13%), Query Frame = 1 

Query: 91  GNDLHGSKKRKLENNDAYESSSGNSTPQVSENGINTKNNNGKEKRSKKGDTNDGEKPREV 150
           G +   S      N+     + G+   + S+  +   + NG EK   KGD  D  KP E 
Sbjct: 125 GKESPASSSLTASNSKVSGENGGSKGGKRSKQDVAGSSKNGVEKCDSKGDNKDDAKPPEA 184

Query: 151 ----VHVRARRGQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYV 210
               +HVRARRGQATDSHS+AER RR KI+ER+  LQD+VPGC +  G AVMLDEIINYV
Sbjct: 185 PKDYIHVRARRGQATDSHSLAERARREKISERMTLLQDLVPGCNRITGKAVMLDEIINYV 244

Query: 211 QSLQNQVEFLSMKLTAASSYHDFNSDSDAEDKL 240
           QSLQ QVEFLSMKL   +   +FN+++    ++
Sbjct: 245 QSLQRQVEFLSMKLATVNPRMEFNANASLSTEM 277

[Close]
BLAST of Csa1G042340 vs. NCBI nr
Match: gi|449439405|ref|XP_004137476.1| (PREDICTED: transcription factor BEE 3-like [Cucumis sativus])

HSP 1 Score: 568.2 bits (1463), Expect = 8.2e-159
Identity = 278/278 (100.00%), Postives = 278/278 (100.00%), Query Frame = 1 

Query: 1   MADFTPNFQSLKPSSFPLMDIDPNQNPNLNFLDNIPILFSESFFNNQTAVPSPRFLENWG 60
           MADFTPNFQSLKPSSFPLMDIDPNQNPNLNFLDNIPILFSESFFNNQTAVPSPRFLENWG
Sbjct: 1   MADFTPNFQSLKPSSFPLMDIDPNQNPNLNFLDNIPILFSESFFNNQTAVPSPRFLENWG 60

Query: 61  ENFQGIFSHHQANQIITPTSSPVFEPKNLFGNDLHGSKKRKLENNDAYESSSGNSTPQVS 120
           ENFQGIFSHHQANQIITPTSSPVFEPKNLFGNDLHGSKKRKLENNDAYESSSGNSTPQVS
Sbjct: 61  ENFQGIFSHHQANQIITPTSSPVFEPKNLFGNDLHGSKKRKLENNDAYESSSGNSTPQVS 120

Query: 121 ENGINTKNNNGKEKRSKKGDTNDGEKPREVVHVRARRGQATDSHSVAERIRRGKINERLR 180
           ENGINTKNNNGKEKRSKKGDTNDGEKPREVVHVRARRGQATDSHSVAERIRRGKINERLR
Sbjct: 121 ENGINTKNNNGKEKRSKKGDTNDGEKPREVVHVRARRGQATDSHSVAERIRRGKINERLR 180

Query: 181 CLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSYHDFNSDSDAEDKLK 240
           CLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSYHDFNSDSDAEDKLK
Sbjct: 181 CLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSYHDFNSDSDAEDKLK 240

Query: 241 GKEIREGNGGISMIGSSTQLGPFDLCFGSYSTLPFNTI 279
           GKEIREGNGGISMIGSSTQLGPFDLCFGSYSTLPFNTI
Sbjct: 241 GKEIREGNGGISMIGSSTQLGPFDLCFGSYSTLPFNTI 278

[Close]
BLAST of Csa1G042340 vs. NCBI nr
Match: gi|659066728|ref|XP_008458311.1| (PREDICTED: transcription factor BEE 3-like [Cucumis melo])

HSP 1 Score: 515.0 bits (1325), Expect = 8.2e-143
Identity = 263/280 (93.93%), Postives = 267/280 (95.36%), Query Frame = 1 

Query: 1   MADFTPNFQSLKPSSFPLMD-IDPNQNPNLNFLDNIPILFSESFFNNQTAVPSPRFLENW 60
           MADFTPNFQSLKPSSFPLMD IDPNQNPNLNFLDNIPI FS+SFFNNQTAVPSPRFLENW
Sbjct: 1   MADFTPNFQSLKPSSFPLMDHIDPNQNPNLNFLDNIPIWFSDSFFNNQTAVPSPRFLENW 60

Query: 61  GENFQGIFSHHQANQIITPTSSPVFEPKNLFGNDLHGS-KKRKLENNDAYESSSGNSTPQ 120
           GENFQGIFS  QANQIITP SSPVFEPK+ FGNDLHGS KKRKLENNDAYESSSGNSTPQ
Sbjct: 61  GENFQGIFS--QANQIITPISSPVFEPKDPFGNDLHGSIKKRKLENNDAYESSSGNSTPQ 120

Query: 121 VSENGINTKNNNGKEKRSKKGDTNDGEKPREVVHVRARRGQATDSHSVAERIRRGKINER 180
           VSENGINTKNNNGK KRSKKGDT DG+KPREVVHVRARRGQATDSHSVAERIRRGKINER
Sbjct: 121 VSENGINTKNNNGKGKRSKKGDTYDGDKPREVVHVRARRGQATDSHSVAERIRRGKINER 180

Query: 181 LRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSYHDFNSDSDAEDK 240
           LRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSYHDFNSDSDAE K
Sbjct: 181 LRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSYHDFNSDSDAEGK 240

Query: 241 LKGKEIREGNGGISMIGSSTQLGPFDLCFGSYSTLPFNTI 279
           LKGKE+REGNGG SMI SSTQLG FDLCFGSYSTLPFNTI
Sbjct: 241 LKGKEMREGNGG-SMIASSTQLGAFDLCFGSYSTLPFNTI 277

[Close]
BLAST of Csa1G042340 vs. NCBI nr
Match: gi|225455954|ref|XP_002276500.1| (PREDICTED: transcription factor BEE 3 [Vitis vinifera])

HSP 1 Score: 259.6 bits (662), Expect = 6.2e-66
Identity = 154/288 (53.47%), Postives = 185/288 (64.24%), Query Frame = 1 

Query: 1   MADFTPNFQSLKPSSFPLMDIDPNQN--------PNLNFLDNIPILFS--ESFFNNQTAV 60
           MADFT + Q  K SS+PL + DPN           N  F DN  + F   E+FF+ Q   
Sbjct: 1   MADFTADLQGFKTSSYPLFEADPNTGLISTQSTEQNQGFFDNPSLNFQALETFFSQQP-- 60

Query: 61  PSPRFLENWGENFQGIFSHHQANQIITPTSSPVFEPKNLFGNDLHGSKKRKLENNDAYES 120
             P F  N  E FQ               + P+ + +   G+ L  +KKRK    DA ES
Sbjct: 61  --PEFPGNLSEIFQ------------QKVAVPMAQAEVSAGDSLCENKKRKARV-DASES 120

Query: 121 SSGNSTPQVSENGINT-KNNNGKEKRSKKGDTNDGEKPREVVHVRARRGQATDSHSVAER 180
           SSGNS+    E+G+   KN++G+ KR+ K    + EKPREVVHVRARRGQATDSHS+AER
Sbjct: 121 SSGNSSTPACESGLKRGKNSSGRGKRAMKSIEKEDEKPREVVHVRARRGQATDSHSLAER 180

Query: 181 IRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSYHDF 240
           +RRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAAS Y+DF
Sbjct: 181 VRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASQYYDF 240

Query: 241 NSDSDAEDKLKGKEIREGNGGISMIGSSTQLGPFDLCFGSYSTLPFNT 278
           NSD+D  + ++  ++            STQ GP DL FGSYS+LP+NT
Sbjct: 241 NSDTDTLETIQRGKVHGEQ------PPSTQHGPIDLTFGSYSSLPYNT 265

[Close]
BLAST of Csa1G042340 vs. NCBI nr
Match: gi|1009131690|ref|XP_015882980.1| (PREDICTED: transcription factor BEE 3 [Ziziphus jujuba])

HSP 1 Score: 259.2 bits (661), Expect = 8.1e-66
Identity = 155/286 (54.20%), Postives = 186/286 (65.03%), Query Frame = 1 

Query: 1   MADFTPNFQSLKPSSFPLMDIDPNQ---------------NPNLNFLDNIPILFSESFFN 60
           MADFT + QS K SSFP +DIDPN                N NLNF   +P   +++FF 
Sbjct: 1   MADFTADLQSFK-SSFPCLDIDPNMELIHQFAGISPSVLDNSNLNFQTLLPFS-NDNFFG 60

Query: 61  NQTAVPSPRFLENWGENFQGIFSHHQANQIIT-PTSSPVFEPKNLFGNDLHGSKKRKLEN 120
           NQTA        N  ENF GI + +  N     P  +P        GN+   SKKRK+  
Sbjct: 61  NQTA----ELPVNLAENFLGIVNQNNQNHAAPFPQLTPA-------GNEFQESKKRKIM- 120

Query: 121 NDAYESSSGNSTPQVSENGINTKNNNGKEKRSKKGDTNDGEKPREVVHVRARRGQATDSH 180
            +  ESSS NS+PQVSE G+  KN++GK KR K  +  + EKP+EVVHVRARRGQATDSH
Sbjct: 121 -EISESSSANSSPQVSETGMKRKNSSGKGKRVKINNVKEEEKPKEVVHVRARRGQATDSH 180

Query: 181 SVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAAS 240
           S+AER+RRGKINERL+CLQD+VPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAAS
Sbjct: 181 SLAERVRRGKINERLKCLQDLVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAAS 240

Query: 241 SYHDFNSDSDA----------EDKLKGKEIREGNGGISMIGSSTQL 261
           +++DFNS++DA          E K   + +REG+GG     SS  L
Sbjct: 241 NFYDFNSETDALETMQRAQANEAKEMERLMREGHGGFGCFHSSWPL 271

[Close]
BLAST of Csa1G042340 vs. NCBI nr
Match: gi|590664700|ref|XP_007036544.1| (BR enhanced expression 1 [Theobroma cacao])

HSP 1 Score: 258.5 bits (659), Expect = 1.4e-65
Identity = 158/286 (55.24%), Postives = 189/286 (66.08%), Query Frame = 1 

Query: 1   MADFTPNFQSLKPSSFPLMDIDP-----NQ----------NPNLNFLDNIPILFSESFFN 60
           MADFT +FQS K  SF  +DIDP     NQ          N  LNF   +P   ++SFF+
Sbjct: 1   MADFTSDFQSFK-QSFSFLDIDPAMESLNQFAELSPGVIDNSALNFQSFLPFS-NDSFFS 60

Query: 61  NQTA-VPSPRFLENWGENFQGIFSHHQANQIITPTSSPVFEPKNLFGNDLHGSKKRKLEN 120
           NQ   +P      NWGEN  G F HH     +   + P    K  F    H SKKRK   
Sbjct: 61  NQAPEIPG----NNWGENLPG-FIHHSNQSSVVSVAQPTVTSKTEF----HESKKRKAL- 120

Query: 121 NDAYESSSGNST-PQVSENGINTKNNNGKEKRSKKGDTNDGEKPREVVHVRARRGQATDS 180
            D  ESSSGNS+ PQVSE+GI  +NN G+ KR++  +  + EKP+EVVHVRARRGQATDS
Sbjct: 121 -DVSESSSGNSSSPQVSESGIKRRNNPGRGKRARSNEKGE-EKPKEVVHVRARRGQATDS 180

Query: 181 HSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAA 240
           HS+AER+RRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAA
Sbjct: 181 HSLAERVRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAA 240

Query: 241 SSYHDFNSDSDAEDKLKGKEIREGNGGISMIGSSTQLGPFDLCFGS 270
           S+Y+DFNS+SDA +K++  + +E      ++ S   +G    CF S
Sbjct: 241 STYYDFNSESDAMEKMQRAKAQEAKELDRLMRSEGYVGGL-ACFHS 271

The following BLAST results are available for this feature:
BLAST of Csa1G042340 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BEE3_ARATH5.6e-5148.40Transcription factor BEE 3 OS=Arabidopsis thaliana GN=BEE3 PE=2 SV=1[more]
BEE1_ARATH1.7e-4749.78Transcription factor BEE 1 OS=Arabidopsis thaliana GN=BEE1 PE=2 SV=1[more]
BH075_ARATH7.2e-3849.21Transcription factor bHLH75 OS=Arabidopsis thaliana GN=BHLH75 PE=2 SV=1[more]
BH062_ARATH1.0e-3143.35Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1[more]
BH077_ARATH6.5e-3147.71Transcription factor bHLH77 OS=Arabidopsis thaliana GN=BHLH77 PE=1 SV=1[more]
BLAST of Csa1G042340 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTN3_CUCSA5.7e-159100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042340 PE=4 SV=1[more]
D7SJ01_VITVI4.3e-6653.47Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g03580 PE=4 SV=... [more]
A0A061FU69_THECC9.6e-6655.24BR enhanced expression 1 OS=Theobroma cacao GN=TCM_012362 PE=4 SV=1[more]
B9I2L2_POPTR4.1e-6452.63Basic helix-loop-helix family protein OS=Populus trichocarpa GN=POPTR_0012s05210... [more]
V7CA67_PHAVU1.9e-6151.42Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G094700g PE=4 SV=1[more]
BLAST of Csa1G042340 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G73830.13.2e-5248.40 BR enhanced expression 3[more]
AT1G18400.19.6e-4949.78 BR enhanced expression 1[more]
AT1G25330.14.0e-3949.21 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT3G07340.15.6e-3343.35 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT3G23690.13.7e-3247.71 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
BLAST of Csa1G042340 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449439405|ref|XP_004137476.1|8.2e-159100.00PREDICTED: transcription factor BEE 3-like [Cucumis sativus][more]
gi|659066728|ref|XP_008458311.1|8.2e-14393.93PREDICTED: transcription factor BEE 3-like [Cucumis melo][more]
gi|225455954|ref|XP_002276500.1|6.2e-6653.47PREDICTED: transcription factor BEE 3 [Vitis vinifera][more]
gi|1009131690|ref|XP_015882980.1|8.1e-6654.20PREDICTED: transcription factor BEE 3 [Ziziphus jujuba][more]
gi|590664700|ref|XP_007036544.1|1.4e-6555.24BR enhanced expression 1 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0046983protein dimerization activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G042340.1Csa1G042340.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainGENE3DG3DSA:4.10.280.10coord: 159..221
score: 1.6
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 163..210
score: 1.
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSMARTSM00353finuluscoord: 165..215
score: 5.
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROFILEPS50888BHLHcoord: 159..209
score: 14
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainunknownSSF47459HLH, helix-loop-helix DNA-binding domaincoord: 157..227
score: 4.58
NoneNo IPR availablePANTHERPTHR12565STEROL REGULATORY ELEMENT-BINDING PROTEINcoord: 14..235
score: 1.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G042340Cla018968Watermelon (97103) v1cuwmB096
Csa1G042340Cla018502Watermelon (97103) v1cuwmB062
Csa1G042340MELO3C002089Melon (DHL92) v3.5.1cumeB027
Csa1G042340MELO3C017314Melon (DHL92) v3.5.1cumeB056
Csa1G042340ClCG06G014740Watermelon (Charleston Gray)cuwcgB083
Csa1G042340ClCG04G011100Watermelon (Charleston Gray)cuwcgB057
Csa1G042340Lsi06G013260Bottle gourd (USVL1VR-Ls)culsiB072
Csa1G042340Lsi02G001820Bottle gourd (USVL1VR-Ls)culsiB022
Csa1G042340MELO3C017314.2Melon (DHL92) v3.6.1cumedB048
Csa1G042340MELO3C002089.2Melon (DHL92) v3.6.1cumedB022
Csa1G042340Cla97C04G077970Watermelon (97103) v2cuwmbB054
Csa1G042340Cla97C06G124260Watermelon (97103) v2cuwmbB080
Csa1G042340Bhi01G002696Wax gourdcuwgoB014
Csa1G042340Bhi08G001022Wax gourdcuwgoB028
Csa1G042340CSPI01G06780Wild cucumber (PI 183967)cpicuB000
Csa1G042340CSPI01G03890Wild cucumber (PI 183967)cpicuB006
Csa1G042340Cucsa.111110Cucumber (Gy14) v1cgycuB139
Csa1G042340Cucsa.121490Cucumber (Gy14) v1cgycuB159
Csa1G042340CmaCh18G000430Cucurbita maxima (Rimu)cmacuB390
Csa1G042340CmaCh10G002300Cucurbita maxima (Rimu)cmacuB069
Csa1G042340CmaCh11G002790Cucurbita maxima (Rimu)cmacuB088
Csa1G042340CmaCh13G010230Cucurbita maxima (Rimu)cmacuB217
Csa1G042340CmoCh10G002430Cucurbita moschata (Rifu)cmocuB059
Csa1G042340CmoCh18G000360Cucurbita moschata (Rifu)cmocuB380
Csa1G042340CmoCh13G010640Cucurbita moschata (Rifu)cmocuB202
Csa1G042340CmoCh11G002820Cucurbita moschata (Rifu)cmocuB077
Csa1G042340Cp4.1LG04g13990Cucurbita pepo (Zucchini)cpecuB655
Csa1G042340Cp4.1LG20g01150Cucurbita pepo (Zucchini)cpecuB505
Csa1G042340Cp4.1LG09g11280Cucurbita pepo (Zucchini)cpecuB029
Csa1G042340Cp4.1LG18g07730Cucurbita pepo (Zucchini)cpecuB357
Csa1G042340CsGy1G003810Cucumber (Gy14) v2cgybcuB004
Csa1G042340CsGy1G006510Cucumber (Gy14) v2cgybcuB001
Csa1G042340Carg09136Silver-seed gourdcarcuB0623
Csa1G042340Carg22749Silver-seed gourdcarcuB0542
Csa1G042340Carg17928Silver-seed gourdcarcuB0492
Csa1G042340Carg04814Silver-seed gourdcarcuB0415
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Csa1G042340Csa1G024150Cucumber (Chinese Long) v2cucuB000
The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G042340Cucumber (Chinese Long) v2cucuB031
Csa1G042340Cucumber (Gy14) v1cgycuB406
Csa1G042340Cucurbita maxima (Rimu)cmacuB406
Csa1G042340Cucurbita moschata (Rifu)cmocuB395
Csa1G042340Melon (DHL92) v3.5.1cumeB011
Csa1G042340Watermelon (Charleston Gray)cuwcgB064
Csa1G042340Watermelon (97103) v1cuwmB040
Csa1G042340Cucurbita pepo (Zucchini)cpecuB028
Csa1G042340Cucumber (Gy14) v2cgybcuB199
Csa1G042340Melon (DHL92) v3.6.1cumedB006