Carg22749 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22749
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Transcription factor
Location	Cucurbita_argyrosperma_scaffold_224 : 86744 .. 87654 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCTGAGTTCACTCCAAACTTTCAGACCTTAAAGCCATCACCTTTTCCTCTAATGGAAGCCGATTCCAACATTCCTGTTTTGTTTAATGACAGTTTCTTTTCCGACCACGCTGCTCCTCCCAGATTCCCGGAAAACCGTCGAGAAAATCTCCCAGAAATTTTCTCTCCAGCCAATCAGCTCGCTTCCCCTGTTTTTGAGCGCAAGAAAAGAAAGCTTGAAACTGACGCTTCTGCAAGCAGTTCCGGAAATTCATTACCTCAGCGTTCTGAAACTGCGATCAACACTAAAAACGTGCAAACCCCCTTTGAATTTTAGTCTCAAATTTCAGAACTTTAATGGGTTTGTTCTCGTTTTCTTGCCTGCAGAGCTCTGGAAGAGGAAAGCAGCCGGAAAAAGGCAGGGGAGTGGTTCATGTTAGAGCCAAAAGAGGTCAAGCAACGGACAGCCACAGTGTAGCTGAAAGGGTAAATTAATTTGCATAAAGTTTATGTTTTTTTCTTCTCTGTTTCTCATTATCATTCCCAAAAACAGATTAGAAGAGGCAAAATCAATGAAAGATTGAGATGTTTGCAAGACATTGTACCAGGATGTTACAAGGTAATGAAAACAGAGGCTGTTTGAATAAAACAATGACAAGTTTTCTCAAACATGTTGTTTTGTGCAGACAATGGGAATGGCAGTGATGTTGGATGAGATAATTAATTACGTGCAGTCTTTGCAGAATCAAGTTGAGGTAAAGCTCCAAACTTTGAGATGAAAAACATCACAAACCAATATTGTTTAATGATCTTGTTTTGTTGTCCTGTTTTTTTTTTTTTTTTTTTTTGCAGTTTCTTTCTATGAAACTCACAGCTGCAAGCTCCTATTATGACTTCAACTCAGACGAAGCATATGAACAAGCTTAG

mRNA sequence

ATGGCTGCTGAGTTCACTCCAAACTTTCAGACCTTAAAGCCATCACCTTTTCCTCTAATGGAAGCCGATTCCAACATTCCTGTTTTGTTTAATGACAGTTTCTTTTCCGACCACGCTGCTCCTCCCAGATTCCCGGAAAACCGTCGAGAAAATCTCCCAGAAATTTTCTCTCCAGCCAATCAGCTCGCTTCCCCTGTTTTTGAGCGCAAGAAAAGAAAGCTTGAAACTGACGCTTCTGCAAGCAGTTCCGGAAATTCATTACCTCAGCGTTCTGAAACTGCGATCAACACTAAAAACAGCTCTGGAAGAGGAAAGCAGCCGGAAAAAGGCAGGGGAGTGGTTCATGTTAGAGCCAAAAGAGGTCAAGCAACGGACAGCCACAGTGTAGCTGAAAGGATTAGAAGAGGCAAAATCAATGAAAGATTGAGATGTTTGCAAGACATTGTACCAGGATGTTACAAGACAATGGGAATGGCAGTGATGTTGGATGAGATAATTAATTACGTGCAGTCTTTGCAGAATCAAGTTGAGTTTCTTTCTATGAAACTCACAGCTGCAAGCTCCTATTATGACTTCAACTCAGACGAAGCATATGAACAAGCTTAG

Coding sequence (CDS)

ATGGCTGCTGAGTTCACTCCAAACTTTCAGACCTTAAAGCCATCACCTTTTCCTCTAATGGAAGCCGATTCCAACATTCCTGTTTTGTTTAATGACAGTTTCTTTTCCGACCACGCTGCTCCTCCCAGATTCCCGGAAAACCGTCGAGAAAATCTCCCAGAAATTTTCTCTCCAGCCAATCAGCTCGCTTCCCCTGTTTTTGAGCGCAAGAAAAGAAAGCTTGAAACTGACGCTTCTGCAAGCAGTTCCGGAAATTCATTACCTCAGCGTTCTGAAACTGCGATCAACACTAAAAACAGCTCTGGAAGAGGAAAGCAGCCGGAAAAAGGCAGGGGAGTGGTTCATGTTAGAGCCAAAAGAGGTCAAGCAACGGACAGCCACAGTGTAGCTGAAAGGATTAGAAGAGGCAAAATCAATGAAAGATTGAGATGTTTGCAAGACATTGTACCAGGATGTTACAAGACAATGGGAATGGCAGTGATGTTGGATGAGATAATTAATTACGTGCAGTCTTTGCAGAATCAAGTTGAGTTTCTTTCTATGAAACTCACAGCTGCAAGCTCCTATTATGACTTCAACTCAGACGAAGCATATGAACAAGCTTAG

Protein sequence

MAAEFTPNFQTLKPSPFPLMEADSNIPVLFNDSFFSDHAAPPRFPENRRENLPEIFSPANQLASPVFERKKRKLETDASASSSGNSLPQRSETAINTKNSSGRGKQPEKGRGVVHVRAKRGQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSYYDFNSDEAYEQA

Homology

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BLAST of Carg22749 vs. NCBI nr
Match: XP_022955101.1 (transcription factor BEE 3-like [Cucurbita moschata])

HSP 1 Score: 389.8 bits (1000), Expect = 5.6e-105
Identity = 200/201 (99.50%), Postives = 200/201 (99.50%), Query Frame = 0


Query: 1   MAAEFTPNFQTLKPSPFPLMEADSNIPVLFNDSFFSDHAAPPRFPENRRENLPEIFSPAN 60
           MAAEFTPNFQTLKPSPFPLMEADSNIPVLFNDSFFSDHAAPPRFPENRRENLPEIFSPAN
Sbjct: 1   MAAEFTPNFQTLKPSPFPLMEADSNIPVLFNDSFFSDHAAPPRFPENRRENLPEIFSPAN 60

Query: 61  QLASPVFERKKRKLETDASASSSGNSLPQRSETAINTKNSSGRGKQPEKGRGVVHVRAKR 120
           QLASPVFERKKRKLETDASASSSGNSLPQRSETAINTKNSSGRGKQPEKGRGVVHVRAKR
Sbjct: 61  QLASPVFERKKRKLETDASASSSGNSLPQRSETAINTKNSSGRGKQPEKGRGVVHVRAKR 120

Query: 121 GQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLS 180
           GQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLS
Sbjct: 121 GQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLS 180

Query: 181 MKLTAASSYYDFNSDEAYEQA 202
           MKLTAASSYYDFNSDEAYE A
Sbjct: 181 MKLTAASSYYDFNSDEAYEHA 201

[Close]

BLAST of Carg22749 vs. NCBI nr
Match: XP_023542834.1 (transcription factor BEE 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 387.1 bits (993), Expect = 3.6e-104
Identity = 198/201 (98.51%), Postives = 200/201 (99.50%), Query Frame = 0


Query: 1   MAAEFTPNFQTLKPSPFPLMEADSNIPVLFNDSFFSDHAAPPRFPENRRENLPEIFSPAN 60
           MAAEFTPNFQ+LKPSPFPLMEADSNIPVLFND FFSDHAAPPRFPENRRENLP+IFSPAN
Sbjct: 1   MAAEFTPNFQSLKPSPFPLMEADSNIPVLFNDGFFSDHAAPPRFPENRRENLPKIFSPAN 60

Query: 61  QLASPVFERKKRKLETDASASSSGNSLPQRSETAINTKNSSGRGKQPEKGRGVVHVRAKR 120
           QLASPVFERKKRKLETDASASSSGNSLPQRSETAINTKNSSGRGKQPEKGRGVVHVRAKR
Sbjct: 61  QLASPVFERKKRKLETDASASSSGNSLPQRSETAINTKNSSGRGKQPEKGRGVVHVRAKR 120

Query: 121 GQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLS 180
           GQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLS
Sbjct: 121 GQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLS 180

Query: 181 MKLTAASSYYDFNSDEAYEQA 202
           MKLTAASSYYDFNSDEAYEQA
Sbjct: 181 MKLTAASSYYDFNSDEAYEQA 201

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BLAST of Carg22749 vs. NCBI nr
Match: XP_022994086.1 (transcription factor BEE 3-like [Cucurbita maxima])

HSP 1 Score: 374.8 bits (961), Expect = 1.9e-100
Identity = 193/201 (96.02%), Postives = 196/201 (97.51%), Query Frame = 0


Query: 1   MAAEFTPNFQTLKPSPFPLMEADSNIPVLFNDSFFSDHAAPPRFPENRRENLPEIFSPAN 60
           MAAEFTPNFQ+LKPSPFPLMEADSNIPVLFNDSFFSDHAAPPRF ENRRENLPEIFSPAN
Sbjct: 1   MAAEFTPNFQSLKPSPFPLMEADSNIPVLFNDSFFSDHAAPPRFLENRRENLPEIFSPAN 60

Query: 61  QLASPVFERKKRKLETDASASSSGNSLPQRSETAINTKNSSGRGKQPEKGRGVVHVRAKR 120
           QLASPVFERKKRKLETDASASSSGNS PQRSETAINTKNSSGRGKQPEK R V HVRAKR
Sbjct: 61  QLASPVFERKKRKLETDASASSSGNSSPQRSETAINTKNSSGRGKQPEKDREVAHVRAKR 120

Query: 121 GQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLS 180
           GQATDSHS+AERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLS
Sbjct: 121 GQATDSHSIAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLS 180

Query: 181 MKLTAASSYYDFNSDEAYEQA 202
           MKLTAASSYYDFNSDEAYE+A
Sbjct: 181 MKLTAASSYYDFNSDEAYERA 201

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BLAST of Carg22749 vs. NCBI nr
Match: XP_022137495.1 (transcription factor BEE 3-like [Momordica charantia])

HSP 1 Score: 263.5 bits (672), Expect = 6.0e-67
Identity = 152/224 (67.86%), Postives = 164/224 (73.21%), Query Frame = 0


Query: 3   AEFTPNFQTLKPSPFPLMEADSN----------------IPVLFNDSFFSDHAAPPRFPE 62
           AE T NFQ+LKPS  PLM+ D N                IPVLFNDSFF +  APPRF E
Sbjct: 2   AELTANFQSLKPSSSPLMDMDPNQNPSLLHNPNVNFLDTIPVLFNDSFFGNQ-APPRFLE 61

Query: 63  NRRENLPEIFSPANQLASPVF-------ERKKRKLETDASASSSGNSLPQRSETAINTKN 122
              EN P +F  ANQ+ +P F       E KKRKLETDAS  SSGNS PQ SET + TKN
Sbjct: 62  TWGENFPGVFCQANQITAPDFPSGNDLHETKKRKLETDASECSSGNSTPQISETGVKTKN 121

Query: 123 SSGRGKQPEKG--------RGVVHVRAKRGQATDSHSVAERIRRGKINERLRCLQDIVPG 182
           SS +GK+ +KG        R VVHVRA+RGQATDSHSVAERIRRGKINERLRCLQDIVPG
Sbjct: 122 SSSKGKRSKKGGENDDEKPREVVHVRARRGQATDSHSVAERIRRGKINERLRCLQDIVPG 181

Query: 183 CYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSYYDFNSD 196
           CYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASS+YDFNSD
Sbjct: 182 CYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSFYDFNSD 224

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BLAST of Carg22749 vs. NCBI nr
Match: XP_022924059.1 (transcription factor BEE 3-like [Cucurbita moschata])

HSP 1 Score: 259.2 bits (661), Expect = 1.1e-65
Identity = 152/223 (68.16%), Postives = 165/223 (73.99%), Query Frame = 0


Query: 3   AEFTPNFQTLKPSPFPLMEAD----------SNIPVLFNDSFFSDHAA-PPRFPENRREN 62
           AEFT NFQ+LKPSPFPLM+ D           NIPVLFNDSFF + AA PPRFPE   EN
Sbjct: 2   AEFTANFQSLKPSPFPLMDMDPNQIPSLNFLDNIPVLFNDSFFGNQAAVPPRFPEIWGEN 61

Query: 63  LPEIFSPANQLASPVFE-----------RKKRKLETDASASSSGNSLPQRSETAINTKNS 122
               F  ANQ+ +PVFE            KKR+L+ +AS SSSGNS PQ       TKN+
Sbjct: 62  ----FCQANQITAPVFEPTNPSGSDLHGSKKRRLQNEASESSSGNSTPQ-------TKNN 121

Query: 123 SGRGKQPEKG--------RGVVHVRAKRGQATDSHSVAERIRRGKINERLRCLQDIVPGC 182
           SG+GK+ +KG        R VVHVRAKRGQATDSHS+AERIRRGKINERLRCLQDIVPGC
Sbjct: 122 SGKGKRSKKGDENDGEKPREVVHVRAKRGQATDSHSIAERIRRGKINERLRCLQDIVPGC 181

Query: 183 YKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSYYDFNSD 196
           YKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSYYDFNSD
Sbjct: 182 YKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSYYDFNSD 213

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BLAST of Carg22749 vs. TAIR10
Match: AT1G73830.1 (BR enhanced expression 3)

HSP 1 Score: 161.4 bits (407), Expect = 5.9e-40
Identity = 108/209 (51.67%), Postives = 128/209 (61.24%), Query Frame = 0


Query: 8   NFQTLKPSPFPLMEADSNIPVLFNDSFFSDHAAPPRFPENRREN--LPEIFSPA----NQ 67
           +FQT  P PF      S++  LF  + F DH     FP    EN     IF P+    N+
Sbjct: 29  HFQTF-PPPF-----SSSLDSLFFHNQFPDH-----FPGKSLENNFHQGIFFPSNIQNNE 88

Query: 68  LASPVFERKKRKLETDASASSSGNSLPQRSETAINTKNSSGR---------------GKQ 127
            +S  F+ KKRK   +A ++S  +   Q   T+    + +G                   
Sbjct: 89  ESSSQFDTKKRKSLMEAVSTSENSVSDQTLSTSSAQVSINGNXXXXXXXXXXXXXXXXXX 148

Query: 128 PEKGRGVVHVRAKRGQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEII 187
                 VVHVRA+RGQATDSHS+AER+RRGKINERL+CLQDIVPGCYKTMGMA MLDEII
Sbjct: 149 XXXXXXVVHVRARRGQATDSHSIAERVRRGKINERLKCLQDIVPGCYKTMGMATMLDEII 208

Query: 188 NYVQSLQNQVEFLSMKLTAASSYYDFNSD 196
           NYVQSLQNQVEFLSMKLTAASSYYDFNS+
Sbjct: 209 NYVQSLQNQVEFLSMKLTAASSYYDFNSE 226

[Close]

BLAST of Carg22749 vs. TAIR10
Match: AT1G18400.1 (BR enhanced expression 1)

HSP 1 Score: 152.9 bits (385), Expect = 2.1e-37
Identity = 74/82 (90.24%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 114 VHVRAKRGQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQ 173
           VHVRA+RGQATDSHS+AER+RRGKINERLRCLQD+VPGCYK MGMA MLDEIINYVQSLQ
Sbjct: 143 VHVRARRGQATDSHSLAERVRRGKINERLRCLQDMVPGCYKAMGMATMLDEIINYVQSLQ 202

Query: 174 NQVEFLSMKLTAASSYYDFNSD 196
           NQVEFLSMKLTAASS+YDFNS+
Sbjct: 203 NQVEFLSMKLTAASSFYDFNSE 224

[Close]

BLAST of Carg22749 vs. TAIR10
Match: AT1G25330.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 142.1 bits (357), Expect = 3.7e-34
Identity = 70/91 (76.92%), Postives = 82/91 (90.11%), Query Frame = 0


Query: 104 GKQPEKGRGVVHVRAKRGQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLD 163
           G + +K + VVHVRAKRGQATDSHS+AER+RR KINERL+CLQD+VPGCYK MGMAVMLD
Sbjct: 92  GDETQKPKDVVHVRAKRGQATDSHSLAERVRREKINERLKCLQDLVPGCYKAMGMAVMLD 151

Query: 164 EIINYVQSLQNQVEFLSMKLTAASSYYDFNS 195
            II+YV+SLQNQ+EFLSMKL+AAS+ YD NS
Sbjct: 152 VIIDYVRSLQNQIEFLSMKLSAASACYDLNS 182

[Close]

BLAST of Carg22749 vs. TAIR10
Match: AT1G68920.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 118.2 bits (295), Expect = 5.7e-27
Identity = 58/82 (70.73%), Postives = 68/82 (82.93%), Query Frame = 0


Query: 112 GVVHVRAKRGQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQS 171
           G +HVRA+RGQAT+SHS+AER+RR KI+ER++ LQD+VPGC K  G AVMLDEIINYVQS
Sbjct: 299 GYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQS 358

Query: 172 LQNQVEFLSMKLTAASSYYDFN 194
           LQ QVEFLSMKL   +   DFN
Sbjct: 359 LQRQVEFLSMKLATVNPQMDFN 380

[Close]

BLAST of Carg22749 vs. TAIR10
Match: AT5G50915.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 117.9 bits (294), Expect = 7.4e-27
Identity = 60/83 (72.29%), Postives = 71/83 (85.54%), Query Frame = 0


Query: 114 VHVRAKRGQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQ 173
           +HVRA+RGQATDSHS+AER+RR KI+ER+R LQ++VPGC K  G A+MLDEIINYVQ+LQ
Sbjct: 134 IHVRARRGQATDSHSLAERVRREKISERMRTLQNLVPGCDKVTGKALMLDEIINYVQTLQ 193

Query: 174 NQVEFLSMKLTAASS-YYDFNSD 196
            QVEFLSMKLT+ S   YDF SD
Sbjct: 194 TQVEFLSMKLTSISPVVYDFGSD 216

[Close]

BLAST of Carg22749 vs. Swiss-Prot
Match: sp|Q8GWK7|BEE3_ARATH (Transcription factor BEE 3 OS=Arabidopsis thaliana OX=3702 GN=BEE3 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.1e-38
Identity = 108/209 (51.67%), Postives = 128/209 (61.24%), Query Frame = 0


Query: 8   NFQTLKPSPFPLMEADSNIPVLFNDSFFSDHAAPPRFPENRREN--LPEIFSPA----NQ 67
           +FQT  P PF      S++  LF  + F DH     FP    EN     IF P+    N+
Sbjct: 29  HFQTF-PPPF-----SSSLDSLFFHNQFPDH-----FPGKSLENNFHQGIFFPSNIQNNE 88

Query: 68  LASPVFERKKRKLETDASASSSGNSLPQRSETAINTKNSSGR---------------GKQ 127
            +S  F+ KKRK   +A ++S  +   Q   T+    + +G                   
Sbjct: 89  ESSSQFDTKKRKSLMEAVSTSENSVSDQTLSTSSAQVSINGNXXXXXXXXXXXXXXXXXX 148

Query: 128 PEKGRGVVHVRAKRGQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEII 187
                 VVHVRA+RGQATDSHS+AER+RRGKINERL+CLQDIVPGCYKTMGMA MLDEII
Sbjct: 149 XXXXXXVVHVRARRGQATDSHSIAERVRRGKINERLKCLQDIVPGCYKTMGMATMLDEII 208

Query: 188 NYVQSLQNQVEFLSMKLTAASSYYDFNSD 196
           NYVQSLQNQVEFLSMKLTAASSYYDFNS+
Sbjct: 209 NYVQSLQNQVEFLSMKLTAASSYYDFNSE 226

[Close]

BLAST of Carg22749 vs. Swiss-Prot
Match: sp|Q8GZ13|BEE1_ARATH (Transcription factor BEE 1 OS=Arabidopsis thaliana OX=3702 GN=BEE1 PE=2 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 3.8e-36
Identity = 74/82 (90.24%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 114 VHVRAKRGQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQ 173
           VHVRA+RGQATDSHS+AER+RRGKINERLRCLQD+VPGCYK MGMA MLDEIINYVQSLQ
Sbjct: 143 VHVRARRGQATDSHSLAERVRRGKINERLRCLQDMVPGCYKAMGMATMLDEIINYVQSLQ 202

Query: 174 NQVEFLSMKLTAASSYYDFNSD 196
           NQVEFLSMKLTAASS+YDFNS+
Sbjct: 203 NQVEFLSMKLTAASSFYDFNSE 224

[Close]

BLAST of Carg22749 vs. Swiss-Prot
Match: sp|A4D998|BH075_ARATH (Transcription factor bHLH75 OS=Arabidopsis thaliana OX=3702 GN=BHLH75 PE=2 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 6.6e-33
Identity = 70/91 (76.92%), Postives = 82/91 (90.11%), Query Frame = 0


Query: 104 GKQPEKGRGVVHVRAKRGQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLD 163
           G + +K + VVHVRAKRGQATDSHS+AER+RR KINERL+CLQD+VPGCYK MGMAVMLD
Sbjct: 92  GDETQKPKDVVHVRAKRGQATDSHSLAERVRREKINERLKCLQDLVPGCYKAMGMAVMLD 151

Query: 164 EIINYVQSLQNQVEFLSMKLTAASSYYDFNS 195
            II+YV+SLQNQ+EFLSMKL+AAS+ YD NS
Sbjct: 152 VIIDYVRSLQNQIEFLSMKLSAASACYDLNS 182

[Close]

BLAST of Carg22749 vs. Swiss-Prot
Match: sp|Q9CAA9|BH049_ARATH (Transcription factor bHLH49 OS=Arabidopsis thaliana OX=3702 GN=BHLH49 PE=1 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.0e-25
Identity = 58/82 (70.73%), Postives = 68/82 (82.93%), Query Frame = 0


Query: 112 GVVHVRAKRGQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQS 171
           G +HVRA+RGQAT+SHS+AER+RR KI+ER++ LQD+VPGC K  G AVMLDEIINYVQS
Sbjct: 299 GYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQS 358

Query: 172 LQNQVEFLSMKLTAASSYYDFN 194
           LQ QVEFLSMKL   +   DFN
Sbjct: 359 LQRQVEFLSMKLATVNPQMDFN 380

[Close]

BLAST of Carg22749 vs. Swiss-Prot
Match: sp|Q93W88|BH137_ARATH (Transcription factor bHLH137 OS=Arabidopsis thaliana OX=3702 GN=BHLH137 PE=1 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.3e-25
Identity = 60/83 (72.29%), Postives = 71/83 (85.54%), Query Frame = 0


Query: 114 VHVRAKRGQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQ 173
           +HVRA+RGQATDSHS+AER+RR KI+ER+R LQ++VPGC K  G A+MLDEIINYVQ+LQ
Sbjct: 134 IHVRARRGQATDSHSLAERVRREKISERMRTLQNLVPGCDKVTGKALMLDEIINYVQTLQ 193

Query: 174 NQVEFLSMKLTAASS-YYDFNSD 196
            QVEFLSMKLT+ S   YDF SD
Sbjct: 194 TQVEFLSMKLTSISPVVYDFGSD 216

[Close]

BLAST of Carg22749 vs. TrEMBL
Match: tr|A0A1S3C7K3|A0A1S3C7K3_CUCME (transcription factor BEE 3-like OS=Cucumis melo OX=3656 GN=LOC103497739 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 7.0e-64
Identity = 153/235 (65.11%), Postives = 169/235 (71.91%), Query Frame = 0


Query: 3   AEFTPNFQTLKPSPFPLMEAD-----------SNIPVLFNDSFFSDHAA--PPRFPENRR 62
           A+FTPNFQ+LKPS FPLM+              NIP+ F+DSFF++  A   PRF EN  
Sbjct: 2   ADFTPNFQSLKPSSFPLMDHIDPNQNPNLNFLDNIPIWFSDSFFNNQTAVPSPRFLENWG 61

Query: 63  ENLPEIFSPANQ----LASPVFER------------KKRKLE-TDASASSSGNSLPQRSE 122
           EN   IFS ANQ    ++SPVFE             KKRKLE  DA  SSSGNS PQ SE
Sbjct: 62  ENFQGIFSQANQIITPISSPVFEPKDPFGNDLHGSIKKRKLENNDAYESSSGNSTPQVSE 121

Query: 123 TAINTKNSSGRGKQPEKG--------RGVVHVRAKRGQATDSHSVAERIRRGKINERLRC 182
             INTKN++G+GK+ +KG        R VVHVRA+RGQATDSHSVAERIRRGKINERLRC
Sbjct: 122 NGINTKNNNGKGKRSKKGDTYDGDKPREVVHVRARRGQATDSHSVAERIRRGKINERLRC 181

Query: 183 LQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSYYDFNSDEAYE 200
           LQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSY+DFNSD   E
Sbjct: 182 LQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSYHDFNSDSDAE 236

[Close]

BLAST of Carg22749 vs. TrEMBL
Match: tr|A0A0A0LTN3|A0A0A0LTN3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042340 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 3.5e-63
Identity = 153/235 (65.11%), Postives = 170/235 (72.34%), Query Frame = 0


Query: 3   AEFTPNFQTLKPSPFPLMEAD----------SNIPVLFNDSFFSDHAA--PPRFPENRRE 62
           A+FTPNFQ+LKPS FPLM+ D           NIP+LF++SFF++  A   PRF EN  E
Sbjct: 2   ADFTPNFQSLKPSSFPLMDIDPNQNPNLNFLDNIPILFSESFFNNQTAVPSPRFLENWGE 61

Query: 63  NLPEIFS--PANQL----ASPVFE-----------RKKRKLE-TDASASSSGNSLPQRSE 122
           N   IFS   ANQ+    +SPVFE            KKRKLE  DA  SSSGNS PQ SE
Sbjct: 62  NFQGIFSHHQANQIITPTSSPVFEPKNLFGNDLHGSKKRKLENNDAYESSSGNSTPQVSE 121

Query: 123 TAINTKNSSGRGKQPEKG--------RGVVHVRAKRGQATDSHSVAERIRRGKINERLRC 182
             INTKN++G+ K+ +KG        R VVHVRA+RGQATDSHSVAERIRRGKINERLRC
Sbjct: 122 NGINTKNNNGKEKRSKKGDTNDGEKPREVVHVRARRGQATDSHSVAERIRRGKINERLRC 181

Query: 183 LQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSYYDFNSDEAYE 200
           LQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSY+DFNSD   E
Sbjct: 182 LQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSYHDFNSDSDAE 236

[Close]

BLAST of Carg22749 vs. TrEMBL
Match: tr|D7SJ01|D7SJ01_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_17s0000g03580 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.2e-49
Identity = 128/225 (56.89%), Postives = 144/225 (64.00%), Query Frame = 0


Query: 3   AEFTPNFQTLKPSPFPLMEADSNIPVLF------NDSFFSDHA------------APPRF 62
           A+FT + Q  K S +PL EAD N  ++       N  FF + +             PP F
Sbjct: 2   ADFTADLQGFKTSSYPLFEADPNTGLISTQSTEQNQGFFDNPSLNFQALETFFSQQPPEF 61

Query: 63  PENRRENLPE-IFSPANQ----LASPVFERKKRKLETDASASSSGNSLPQRSETAINT-K 122
           P N  E   + +  P  Q        + E KKRK   DAS SSSGNS     E+ +   K
Sbjct: 62  PGNLSEIFQQKVAVPMAQAEVSAGDSLCENKKRKARVDASESSSGNSSTPACESGLKRGK 121

Query: 123 NSSGRG--------KQPEKGRGVVHVRAKRGQATDSHSVAERIRRGKINERLRCLQDIVP 182
           NSSGRG        K+ EK R VVHVRA+RGQATDSHS+AER+RRGKINERLRCLQDIVP
Sbjct: 122 NSSGRGKRAMKSIEKEDEKPREVVHVRARRGQATDSHSLAERVRRGKINERLRCLQDIVP 181

Query: 183 GCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSYYDFNSD 196
           GCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAAS YYDFNSD
Sbjct: 182 GCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASQYYDFNSD 226

[Close]

BLAST of Carg22749 vs. TrEMBL
Match: tr|V7CQI4|V7CQI4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_002G316900g PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.9e-48
Identity = 122/213 (57.28%), Postives = 150/213 (70.42%), Query Frame = 0


Query: 3   AEFTPNFQTLKPSPFPLMEADS----NIPVLFNDSFFSDHAAPPRFPENRRENLPEIFSP 62
           A+FT +FQ+ +PS FP ++ D+    N+ + F+D+  +  +  P+FP N   N P  F  
Sbjct: 2   AQFTAHFQSFRPS-FPFLDIDNMEIQNL-LPFDDTLLA--SPEPQFPPNLEGNFPAPFQC 61

Query: 63  ANQLASPVF---------ERKKRKLETDASASSSGNSLPQRSETAINTKNSSGRGK---- 122
            +  A PV          E KKR+  TD    SSGNS P  SE+  NTKNSSGRGK    
Sbjct: 62  VDHNAVPVLVPISSNEVHEGKKRE-ATDMCDPSSGNSTPDISESGSNTKNSSGRGKRVKR 121

Query: 123 ---QPEKGRGVVHVRAKRGQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVML 182
              + +K   VVHVRAKRGQATDSHS+AER+RRGKINE+LRCLQ+IVPGCYKTMGMA+ML
Sbjct: 122 NAVEDKKPNQVVHVRAKRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAIML 181

Query: 183 DEIINYVQSLQNQVEFLSMKLTAASSYYDFNSD 196
           DEIINYVQSLQ+QVEFLSMKL+AAS+YYDFNS+
Sbjct: 182 DEIINYVQSLQHQVEFLSMKLSAASTYYDFNSE 209

[Close]

BLAST of Carg22749 vs. TrEMBL
Match: tr|A0A0L9TI19|A0A0L9TI19_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan847s002000 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.7e-47
Identity = 122/206 (59.22%), Postives = 143/206 (69.42%), Query Frame = 0


Query: 3   AEFTPNFQTLKPSPFPLMEADS-NIPVLFN-DSFFSDHAAPPRFPENRRENLPEIFSPAN 62
           AEFT + Q+ +PS FP ++ D+  I  L   DS     +  P FP N  EN P +F   +
Sbjct: 2   AEFTADLQSFRPS-FPFLDIDNMEIQNLVPFDSLLG--STEPEFPGNLEENFPGLFQCVD 61

Query: 63  QLASP----VFERKKRKLETDASASSSGNSLPQRSETAINTKNSSGRGK-------QPEK 122
             A P    V E KKR+  TD    SSGNS P  SE+   TKN  GRGK       + +K
Sbjct: 62  HNAVPALNEVHEGKKRE-ATDMGDPSSGNSTPDISESGSKTKNICGRGKRVKRNAVEDKK 121

Query: 123 GRGVVHVRAKRGQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYV 182
              VVHVRAKRGQATDSHS+AER+RRGKINE+LRCLQ+IVPGCYKTMGMA+MLDEIINYV
Sbjct: 122 PNQVVHVRAKRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAIMLDEIINYV 181

Query: 183 QSLQNQVEFLSMKLTAASSYYDFNSD 196
           QSLQ+QVEFLSMKL+AASSYYDFNS+
Sbjct: 182 QSLQHQVEFLSMKLSAASSYYDFNSE 203

The following BLAST results are available for this feature:

BLAST of Carg22749 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022955101.1	5.6e-105	99.50	transcription factor BEE 3-like [Cucurbita moschata]	[more]
XP_023542834.1	3.6e-104	98.51	transcription factor BEE 3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022994086.1	1.9e-100	96.02	transcription factor BEE 3-like [Cucurbita maxima]	[more]
XP_022137495.1	6.0e-67	67.86	transcription factor BEE 3-like [Momordica charantia]	[more]
XP_022924059.1	1.1e-65	68.16	transcription factor BEE 3-like [Cucurbita moschata]	[more]

BLAST of Carg22749 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G73830.1	5.9e-40	51.67	BR enhanced expression 3	[more]
AT1G18400.1	2.1e-37	90.24	BR enhanced expression 1	[more]
AT1G25330.1	3.7e-34	76.92	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G68920.1	5.7e-27	70.73	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G50915.1	7.4e-27	72.29	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

BLAST of Carg22749 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8GWK7\|BEE3_ARATH	1.1e-38	51.67	Transcription factor BEE 3 OS=Arabidopsis thaliana OX=3702 GN=BEE3 PE=2 SV=1	[more]
sp\|Q8GZ13\|BEE1_ARATH	3.8e-36	90.24	Transcription factor BEE 1 OS=Arabidopsis thaliana OX=3702 GN=BEE1 PE=2 SV=1	[more]
sp\|A4D998\|BH075_ARATH	6.6e-33	76.92	Transcription factor bHLH75 OS=Arabidopsis thaliana OX=3702 GN=BHLH75 PE=2 SV=1	[more]
sp\|Q9CAA9\|BH049_ARATH	1.0e-25	70.73	Transcription factor bHLH49 OS=Arabidopsis thaliana OX=3702 GN=BHLH49 PE=1 SV=1	[more]
sp\|Q93W88\|BH137_ARATH	1.3e-25	72.29	Transcription factor bHLH137 OS=Arabidopsis thaliana OX=3702 GN=BHLH137 PE=1 SV=...	[more]

BLAST of Carg22749 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C7K3\|A0A1S3C7K3_CUCME	7.0e-64	65.11	transcription factor BEE 3-like OS=Cucumis melo OX=3656 GN=LOC103497739 PE=4 SV=...	[more]
tr\|A0A0A0LTN3\|A0A0A0LTN3_CUCSA	3.5e-63	65.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042340 PE=4 SV=1	[more]
tr\|D7SJ01\|D7SJ01_VITVI	2.2e-49	56.89	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_17s0000g03580 PE=4 SV=...	[more]
tr\|V7CQI4\|V7CQI4_PHAVU	1.9e-48	57.28	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_002G316900g PE=4 ...	[more]
tr\|A0A0L9TI19\|A0A0L9TI19_PHAAN	2.7e-47	59.22	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan847s002000 P...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity

Vocabulary: **INTERPRO**
Term	Definition
IPR036638	HLH_DNA-bd_sf
IPR011598	bHLH_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22749-RA	Carg22749-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 128..178 e-value: 5.1E-8 score: 42.7
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 126..173 e-value: 9.9E-6 score: 25.3
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 122..172 score: 14.996
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	CDD	cd00083	HLH	coord: 120..177 e-value: 8.2766E-10 score: 51.0607
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	G3DSA:4.10.280.10		coord: 119..190 e-value: 2.7E-12 score: 48.7
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	SSF47459	HLH, helix-loop-helix DNA-binding domain	coord: 120..190
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..129
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..129
None	No IPR available	PANTHER	PTHR12565:SF296	SUBFAMILY NOT NAMED	coord: 30..195
None	No IPR available	PANTHER	PTHR12565	STEROL REGULATORY ELEMENT-BINDING PROTEIN	coord: 30..195

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22749	Cla018968	Watermelon (97103) v1	carwmB0511
Carg22749	Cla018502	Watermelon (97103) v1	carwmB0509
Carg22749	Csa1G042340	Cucumber (Chinese Long) v2	carcuB0542
Carg22749	Csa1G024150	Cucumber (Chinese Long) v2	carcuB0543
Carg22749	MELO3C017314	Melon (DHL92) v3.5.1	carmeB0518
Carg22749	MELO3C002089	Melon (DHL92) v3.5.1	carmeB0516
Carg22749	ClCG06G014740	Watermelon (Charleston Gray)	carwcgB0500
Carg22749	ClCG04G011100	Watermelon (Charleston Gray)	carwcgB0498
Carg22749	CSPI01G06780	Wild cucumber (PI 183967)	carcpiB0549
Carg22749	CSPI01G03890	Wild cucumber (PI 183967)	carcpiB0550
Carg22749	Cucsa.121490	Cucumber (Gy14) v1	carcgyB0589
Carg22749	CmaCh11G002790	Cucurbita maxima (Rimu)	carcmaB0720
Carg22749	CmaCh13G010230	Cucurbita maxima (Rimu)	carcmaB0721
Carg22749	CmaCh18G000430	Cucurbita maxima (Rimu)	carcmaB0722
Carg22749	CmoCh13G010640	Cucurbita moschata (Rifu)	carcmoB0698
Carg22749	CmoCh18G000360	Cucurbita moschata (Rifu)	carcmoB0699
Carg22749	Lsi02G001820	Bottle gourd (USVL1VR-Ls)	carlsiB467
Carg22749	Lsi06G013260	Bottle gourd (USVL1VR-Ls)	carlsiB468
Carg22749	Cp4.1LG09g11280	Cucurbita pepo (Zucchini)	carcpeB0722
Carg22749	Cp4.1LG20g01150	Cucurbita pepo (Zucchini)	carcpeB0725
Carg22749	Cp4.1LG04g13990	Cucurbita pepo (Zucchini)	carcpeB0726
Carg22749	CsGy1G003810	Cucumber (Gy14) v2	carcgybB0519
Carg22749	CsGy1G006510	Cucumber (Gy14) v2	carcgybB0518
Carg22749	MELO3C002089.2	Melon (DHL92) v3.6.1	carmedB0522
Carg22749	MELO3C017314.2	Melon (DHL92) v3.6.1	carmedB0524
Carg22749	CsaV3_1G006650	Cucumber (Chinese Long) v3	carcucB0548
Carg22749	CsaV3_1G003910	Cucumber (Chinese Long) v3	carcucB0549
Carg22749	Cla97C04G077970	Watermelon (97103) v2	carwmbB0536
Carg22749	Cla97C06G124260	Watermelon (97103) v2	carwmbB0538
Carg22749	Bhi01G002696	Wax gourd	carwgoB0622
Carg22749	Bhi08G001022	Wax gourd	carwgoB0623

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg22749	Carg04814	Silver-seed gourd	carcarB413
Carg22749	Carg09136	Silver-seed gourd	carcarB496

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22749	Cucurbita maxima (Rimu)	carcmaB0719
Carg22749	Cucurbita moschata (Rifu)	carcmoB0697
Carg22749	Cucurbita pepo (Zucchini)	carcpeB0723