Csa1G042300 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G042300
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 4228911 .. 4229190 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGTGTTTGGCGAAACCTTATGAGGATTGATAGAGCCAAGGAGGCAAGTGTTAGGCAATGTAGAGTGAGAAACATATACAAACACATAAAACCTGACCATGAAAGCGCTGGACAACACCGTGACAAACATGCTCGCCTTGAAGTTATCAAACATGTCTTACAAACCTCATATTTCGGTTTCTTTTTTTTTACTTTCTTGACTCGGTTTGGTCACTAAACAAACGACTTCGTAGAGGTTTCTCTAGGCAAAGTCTCAAGGTTCAGGAATAAGGTAA

mRNA sequence

ATGGCAAGTGTTTGGCGAAACCTTATGAGGATTGATAGAGCCAAGGAGGCAAGTGTTAGGCAATGTAGAGTGAGAAACATATACAAACACATAAAACCTGACCATGAAAGCGCTGGACAACACCGTGACAAACATGCTCGCCTTGAAGCAAAGTCTCAAGGTTCAGGAATAAGGTAA

Coding sequence (CDS)

ATGGCAAGTGTTTGGCGAAACCTTATGAGGATTGATAGAGCCAAGGAGGCAAGTGTTAGGCAATGTAGAGTGAGAAACATATACAAACACATAAAACCTGACCATGAAAGCGCTGGACAACACCGTGACAAACATGCTCGCCTTGAAGCAAAGTCTCAAGGTTCAGGAATAAGGTAA

Protein sequence

MASVWRNLMRIDRAKEASVRQCRVRNIYKHIKPDHESAGQHRDKHARLEAKSQGSGIR*
Homology
[Close]
BLAST of Csa1G042300 vs. TrEMBL
Match: A0A0A0LQS1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042300 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 3.0e-25
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1 

Query: 1  MASVWRNLMRIDRAKEASVRQCRVRNIYKHIKPDHESAGQHRDKHARLEAKSQGSGIR 59
          MASVWRNLMRIDRAKEASVRQCRVRNIYKHIKPDHESAGQHRDKHARLEAKSQGSGIR
Sbjct: 1  MASVWRNLMRIDRAKEASVRQCRVRNIYKHIKPDHESAGQHRDKHARLEAKSQGSGIR 58

[Close]
BLAST of Csa1G042300 vs. NCBI nr
Match: gi|700209022|gb|KGN64118.1| (hypothetical protein Csa_1G042300 [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 4.3e-25
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1 

Query: 1  MASVWRNLMRIDRAKEASVRQCRVRNIYKHIKPDHESAGQHRDKHARLEAKSQGSGIR 59
          MASVWRNLMRIDRAKEASVRQCRVRNIYKHIKPDHESAGQHRDKHARLEAKSQGSGIR
Sbjct: 1  MASVWRNLMRIDRAKEASVRQCRVRNIYKHIKPDHESAGQHRDKHARLEAKSQGSGIR 58

The following BLAST results are available for this feature:
BLAST of Csa1G042300 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQS1_CUCSA3.0e-25100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G042300 PE=4 SV=1[more]
BLAST of Csa1G042300 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209022|gb|KGN64118.1|4.3e-25100.00hypothetical protein Csa_1G042300 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU091200cucumber EST collection version 3.0transcribed_cluster
CU150819cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G042300.1Csa1G042300.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU150819CU150819transcribed_cluster
CU091200CU091200transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G042300CSPI01G06740Wild cucumber (PI 183967)cpicuB000
Csa1G042300CsGy1G006470Cucumber (Gy14) v2cgybcuB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G042300Cucumber (Gy14) v1cgycuB159
Csa1G042300Cucumber (Gy14) v1cgycuB406
Csa1G042300Cucurbita maxima (Rimu)cmacuB069
Csa1G042300Cucurbita maxima (Rimu)cmacuB088
Csa1G042300Cucurbita maxima (Rimu)cmacuB217
Csa1G042300Cucurbita maxima (Rimu)cmacuB406
Csa1G042300Cucurbita maxima (Rimu)cmacuB390
Csa1G042300Cucurbita moschata (Rifu)cmocuB059
Csa1G042300Cucurbita moschata (Rifu)cmocuB077
Csa1G042300Cucurbita moschata (Rifu)cmocuB202
Csa1G042300Cucurbita moschata (Rifu)cmocuB380
Csa1G042300Cucurbita moschata (Rifu)cmocuB395
Csa1G042300Melon (DHL92) v3.5.1cumeB011
Csa1G042300Melon (DHL92) v3.5.1cumeB027
Csa1G042300Melon (DHL92) v3.5.1cumeB056
Csa1G042300Watermelon (Charleston Gray)cuwcgB057
Csa1G042300Watermelon (Charleston Gray)cuwcgB064
Csa1G042300Watermelon (Charleston Gray)cuwcgB083
Csa1G042300Watermelon (97103) v1cuwmB040
Csa1G042300Watermelon (97103) v1cuwmB062
Csa1G042300Watermelon (97103) v1cuwmB096
Csa1G042300Cucurbita pepo (Zucchini)cpecuB028
Csa1G042300Cucurbita pepo (Zucchini)cpecuB029
Csa1G042300Cucurbita pepo (Zucchini)cpecuB357
Csa1G042300Cucurbita pepo (Zucchini)cpecuB505
Csa1G042300Cucurbita pepo (Zucchini)cpecuB655
Csa1G042300Bottle gourd (USVL1VR-Ls)culsiB022
Csa1G042300Bottle gourd (USVL1VR-Ls)culsiB072
Csa1G042300Cucumber (Gy14) v2cgybcuB004
Csa1G042300Cucumber (Gy14) v2cgybcuB199
Csa1G042300Melon (DHL92) v3.6.1cumedB022
Csa1G042300Melon (DHL92) v3.6.1cumedB006
Csa1G042300Melon (DHL92) v3.6.1cumedB048
Csa1G042300Silver-seed gourdcarcuB0415
Csa1G042300Silver-seed gourdcarcuB0492
Csa1G042300Silver-seed gourdcarcuB0542
Csa1G042300Silver-seed gourdcarcuB0623
Csa1G042300Watermelon (97103) v2cuwmbB054
Csa1G042300Watermelon (97103) v2cuwmbB080
Csa1G042300Wax gourdcuwgoB014
Csa1G042300Wax gourdcuwgoB028
Csa1G042300Cucumber (Chinese Long) v2cucuB031
Csa1G042300Cucumber (Chinese Long) v2cucuB000